RNA–Protein interactions for RNA: ENST00000457942.1

CHCHD3-204, Transcript of coiled-coil-helix-coiled-coil-helix domain containing 3, humanhuman

TSL 4

Gene CHCHD3, Length 559 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHCHD3-204ENST00000457942 CDK13Q14004 1512 aaKnown RBP25.99■■□□□ 1.75
CHCHD3-204ENST00000457942 HECW1Q76N89 1606 aa25.98■■□□□ 1.75
CHCHD3-204ENST00000457942 SCAPERQ9BY12 1400 aa25.88■■□□□ 1.73
CHCHD3-204ENST00000457942 CERKQ8TCT0 537 aa25.88■■□□□ 1.73
CHCHD3-204ENST00000457942 ATP1B4Q9UN42 357 aaPredicted RBP25.87■■□□□ 1.73
CHCHD3-204ENST00000457942 MAGI2Q86UL8 1455 aa25.86■■□□□ 1.73
CHCHD3-204ENST00000457942 FMN1Q68DA7 1419 aa25.85■■□□□ 1.73
CHCHD3-204ENST00000457942 ARHGAP35Q9NRY4 1499 aa25.85■■□□□ 1.73
CHCHD3-204ENST00000457942 PREX1Q8TCU6 1659 aa25.84■■□□□ 1.73
CHCHD3-204ENST00000457942 ARHGEF12Q9NZN5 1544 aa25.83■■□□□ 1.73
CHCHD3-204ENST00000457942 MYO5CQ9NQX4 1742 aa25.82■■□□□ 1.72
CHCHD3-204ENST00000457942 PLCH2O75038 1416 aa25.81■■□□□ 1.72
CHCHD3-204ENST00000457942 C9orf84Q5VXU9 1444 aa25.8■■□□□ 1.72
CHCHD3-204ENST00000457942 CEBPAP49715 358 aaPredicted RBP25.8■■□□□ 1.72
CHCHD3-204ENST00000457942 KIF14Q15058 1648 aa25.79■■□□□ 1.72
CHCHD3-204ENST00000457942 ATP10AO60312 1499 aa25.79■■□□□ 1.72
CHCHD3-204ENST00000457942 ARHGAP5Q13017 1502 aa25.72■■□□□ 1.71
CHCHD3-204ENST00000457942 STRCQ7RTU9 1775 aa25.72■■□□□ 1.71
CHCHD3-204ENST00000457942 DISP3Q9P2K9 1392 aa25.71■■□□□ 1.71
CHCHD3-204ENST00000457942 MYT1LQ9UL68 1186 aa25.7■■□□□ 1.7
CHCHD3-204ENST00000457942 ZNF518AQ6AHZ1 1483 aa25.69■■□□□ 1.7
CHCHD3-204ENST00000457942 CDK11AQ9UQ88 783 aaPredicted RBP25.69■■□□□ 1.7
CHCHD3-204ENST00000457942 UHRF1BP1Q6BDS2 1440 aa25.69■■□□□ 1.7
CHCHD3-204ENST00000457942 EFCAB2Q5VUJ9 269 aa25.68■■□□□ 1.7
CHCHD3-204ENST00000457942 DIP2CQ9Y2E4 1556 aa25.68■■□□□ 1.7
CHCHD3-204ENST00000457942 KDM5CP41229 1560 aa25.66■■□□□ 1.7
CHCHD3-204ENST00000457942 ABCA6Q8N139 1617 aa25.66■■□□□ 1.7
CHCHD3-204ENST00000457942 ILDR2Q71H61 639 aa25.65■■□□□ 1.7
CHCHD3-204ENST00000457942 LRRIQ1Q96JM4 1722 aa25.65■■□□□ 1.7
CHCHD3-204ENST00000457942 AFAP1Q8N556 730 aa25.64■■□□□ 1.7
CHCHD3-204ENST00000457942 C3P01024 1663 aa25.62■■□□□ 1.69
CHCHD3-204ENST00000457942 CLIP1P30622 1438 aa25.62■■□□□ 1.69
CHCHD3-204ENST00000457942 TROQ12816 1431 aaPredicted RBP25.6■■□□□ 1.69
CHCHD3-204ENST00000457942 SPATA31D1Q6ZQQ2 1576 aa25.59■■□□□ 1.69
CHCHD3-204ENST00000457942 CCDC18Q5T9S5 1454 aa25.57■■□□□ 1.68
CHCHD3-204ENST00000457942 CDC42BPBQ9Y5S2 1711 aa25.57■■□□□ 1.68
CHCHD3-204ENST00000457942 CASKIN1Q8WXD9 1431 aa25.56■■□□□ 1.68
CHCHD3-204ENST00000457942 DMRT2Q9Y5R5 561 aa25.56■■□□□ 1.68
CHCHD3-204ENST00000457942 REREQ9P2R6 1566 aa25.55■■□□□ 1.68
CHCHD3-204ENST00000457942 PREX2Q70Z35 1606 aa25.54■■□□□ 1.68
CHCHD3-204ENST00000457942 ABCC1P33527 1531 aa25.53■■□□□ 1.68
CHCHD3-204ENST00000457942 ITSN2Q9NZM3 1697 aa25.53■■□□□ 1.68
CHCHD3-204ENST00000457942 TRAPPC8Q9Y2L5 1435 aa25.52■■□□□ 1.68
CHCHD3-204ENST00000457942 FYCO1Q9BQS8 1478 aa25.5■■□□□ 1.67
CHCHD3-204ENST00000457942 ESF1Q9H501 851 aaKnown RBP25.5■■□□□ 1.67
CHCHD3-204ENST00000457942 MLH3Q9UHC1 1453 aa25.48■■□□□ 1.67
CHCHD3-204ENST00000457942 PTPRTO14522 1441 aa25.48■■□□□ 1.67
CHCHD3-204ENST00000457942 SOCS7O14512 581 aa25.47■■□□□ 1.67
CHCHD3-204ENST00000457942 LTBP4Q8N2S1 1624 aa25.47■■□□□ 1.67
CHCHD3-204ENST00000457942 AGLP35573 1532 aa25.46■■□□□ 1.67
CHCHD3-204ENST00000457942 KIDINS220Q9ULH0 1771 aa25.45■■□□□ 1.66
CHCHD3-204ENST00000457942 SETD1BQ9UPS6 1966 aaKnown RBP25.43■■□□□ 1.66
CHCHD3-204ENST00000457942 NCOA1Q15788 1441 aa25.43■■□□□ 1.66
CHCHD3-204ENST00000457942 CAMSAP1Q5T5Y3 1602 aa25.41■■□□□ 1.66
CHCHD3-204ENST00000457942 CDC42BPAQ5VT25 1732 aa25.4■■□□□ 1.66
CHCHD3-204ENST00000457942 SAMD9LQ8IVG5 1584 aa25.37■■□□□ 1.65
CHCHD3-204ENST00000457942 SYCP2Q9BX26 1530 aa25.37■■□□□ 1.65
CHCHD3-204ENST00000457942 CNTLNQ9NXG0 1405 aa25.37■■□□□ 1.65
CHCHD3-204ENST00000457942 ZNF777Q9ULD5 760 aaPredicted RBP25.36■■□□□ 1.65
CHCHD3-204ENST00000457942 SUPT6HQ7KZ85 1726 aaKnown RBP25.36■■□□□ 1.65
CHCHD3-204ENST00000457942 MROH2AA6NES4 1674 aa25.35■■□□□ 1.65
CHCHD3-204ENST00000457942 CLTCQ00610 1675 aaKnown RBP25.33■■□□□ 1.65
CHCHD3-204ENST00000457942 MYO3AQ8NEV4 1616 aa25.33■■□□□ 1.65
CHCHD3-204ENST00000457942 IQSEC2Q5JU85 1478 aa25.32■■□□□ 1.64
CHCHD3-204ENST00000457942 ZNF335Q9H4Z2 1342 aaPredicted RBP25.31■■□□□ 1.64
CHCHD3-204ENST00000457942 NCKAP5LQ9HCH0 1330 aa25.31■■□□□ 1.64
CHCHD3-204ENST00000457942 CEP162Q5TB80 1403 aa25.29■■□□□ 1.64
CHCHD3-204ENST00000457942 NPATQ14207 1427 aa25.29■■□□□ 1.64
CHCHD3-204ENST00000457942 MTUS2Q5JR59 1369 aa25.27■■□□□ 1.64
CHCHD3-204ENST00000457942 ATP7AQ04656 1500 aa25.27■■□□□ 1.64
CHCHD3-204ENST00000457942 ZNF142P52746 1687 aaPredicted RBP25.26■■□□□ 1.63
CHCHD3-204ENST00000457942 ZMYM3Q14202 1370 aa25.26■■□□□ 1.63
CHCHD3-204ENST00000457942 SPAG9O60271 1321 aaKnown RBP25.25■■□□□ 1.63
CHCHD3-204ENST00000457942 INO80Q9ULG1 1556 aaPredicted RBP25.24■■□□□ 1.63
CHCHD3-204ENST00000457942 CEP170BQ9Y4F5 1589 aaPredicted RBP25.24■■□□□ 1.63
CHCHD3-204ENST00000457942 UBAP1LF5GYI3 381 aa25.24■■□□□ 1.63
CHCHD3-204ENST00000457942 HNRNPMP52272 730 aaKnown RBP eCLIP25.24■■□□□ 1.633e-6■□□□□ 10.4
CHCHD3-204ENST00000457942 PLXNC1O60486 1568 aa25.22■■□□□ 1.63
CHCHD3-204ENST00000457942 GPATCH8Q9UKJ3 1502 aaKnown RBP25.22■■□□□ 1.63
CHCHD3-204ENST00000457942 CCNB3Q8WWL7 1395 aa25.21■■□□□ 1.63
CHCHD3-204ENST00000457942 EHBP1L1Q8N3D4 1523 aa25.19■■□□□ 1.62
CHCHD3-204ENST00000457942 A2MP01023 1474 aa25.19■■□□□ 1.62
CHCHD3-204ENST00000457942 GGT6Q6P531 493 aa25.17■■□□□ 1.62
CHCHD3-204ENST00000457942 CFDP1Q9UEE9 299 aaPredicted RBP25.17■■□□□ 1.62
CHCHD3-204ENST00000457942 PTPRKQ15262 1439 aa25.17■■□□□ 1.62
CHCHD3-204ENST00000457942 PLA2R1Q13018 1463 aa25.16■■□□□ 1.62
CHCHD3-204ENST00000457942 TCOF1Q13428 1488 aaKnown RBP25.15■■□□□ 1.62
CHCHD3-204ENST00000457942 PLEKHH2Q8IVE3 1493 aa25.14■■□□□ 1.61
CHCHD3-204ENST00000457942 SCAF1Q9H7N4 1312 aaKnown RBP25.13■■□□□ 1.61
CHCHD3-204ENST00000457942 TIAM1Q13009 1591 aa25.12■■□□□ 1.61
CHCHD3-204ENST00000457942 PKD2Q13563 968 aa25.1■■□□□ 1.61
CHCHD3-204ENST00000457942 PPP6R1Q9UPN7 881 aa25.1■■□□□ 1.61
CHCHD3-204ENST00000457942 ADGBQ8N7X0 1667 aa25.1■■□□□ 1.61
CHCHD3-204ENST00000457942 KIAA1107Q9UPP5 1409 aa25.08■■□□□ 1.61
CHCHD3-204ENST00000457942 LOC105371045A0A1W2PR82 267 aa25.07■■□□□ 1.6
CHCHD3-204ENST00000457942 DNMT1P26358 1616 aaKnown RBP25.07■■□□□ 1.6
CHCHD3-204ENST00000457942 PIP4K2BP78356 416 aa25.06■■□□□ 1.6
CHCHD3-204ENST00000457942 POLR1AO95602 1720 aaPredicted RBP25.06■■□□□ 1.6
CHCHD3-204ENST00000457942 A2ML1A8K2U0 1454 aa25.05■■□□□ 1.6
CHCHD3-204ENST00000457942 MED1Q15648 1581 aaPredicted RBP25.05■■□□□ 1.6
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms