RNA–Protein interactions for RNA: ENST00000454428.5

UBE2D4-209, Transcript of ubiquitin conjugating enzyme E2 D4 (putative), humanhuman

TSL 3

Gene UBE2D4, Length 288 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE2D4-209ENST00000454428 ARHGEF12Q9NZN5 1544 aa29.12■■■□□ 2.25
UBE2D4-209ENST00000454428 SCAPERQ9BY12 1400 aa29.11■■■□□ 2.25
UBE2D4-209ENST00000454428 PLCH2O75038 1416 aa29.11■■■□□ 2.25
UBE2D4-209ENST00000454428 EEA1Q15075 1411 aa29.08■■■□□ 2.25
UBE2D4-209ENST00000454428 PREX1Q8TCU6 1659 aa29.06■■■□□ 2.24
UBE2D4-209ENST00000454428 ATP10AO60312 1499 aa29.06■■■□□ 2.24
UBE2D4-209ENST00000454428 C9orf84Q5VXU9 1444 aa29.03■■■□□ 2.24
UBE2D4-209ENST00000454428 STRCQ7RTU9 1775 aa29.02■■■□□ 2.24
UBE2D4-209ENST00000454428 CEBPAP49715 358 aaPredicted RBP29■■■□□ 2.23
UBE2D4-209ENST00000454428 MYO5CQ9NQX4 1742 aa29■■■□□ 2.23
UBE2D4-209ENST00000454428 KIF14Q15058 1648 aa28.95■■■□□ 2.23
UBE2D4-209ENST00000454428 KDM5CP41229 1560 aa28.93■■■□□ 2.22
UBE2D4-209ENST00000454428 EFCAB2Q5VUJ9 269 aa28.93■■■□□ 2.22
UBE2D4-209ENST00000454428 ILDR2Q71H61 639 aa28.91■■■□□ 2.22
UBE2D4-209ENST00000454428 ZNF518AQ6AHZ1 1483 aa28.9■■■□□ 2.22
UBE2D4-209ENST00000454428 DIP2CQ9Y2E4 1556 aa28.88■■■□□ 2.21
UBE2D4-209ENST00000454428 SETD1BQ9UPS6 1966 aaKnown RBP28.87■■■□□ 2.21
UBE2D4-209ENST00000454428 AFAP1Q8N556 730 aa28.86■■■□□ 2.21
UBE2D4-209ENST00000454428 UHRF1BP1Q6BDS2 1440 aa28.86■■■□□ 2.21
UBE2D4-209ENST00000454428 REREQ9P2R6 1566 aa28.84■■■□□ 2.21
UBE2D4-209ENST00000454428 DISP3Q9P2K9 1392 aa28.84■■■□□ 2.21
UBE2D4-209ENST00000454428 DMRT2Q9Y5R5 561 aa28.83■■■□□ 2.21
UBE2D4-209ENST00000454428 FMN1Q68DA7 1419 aa28.83■■■□□ 2.21
UBE2D4-209ENST00000454428 ARHGAP35Q9NRY4 1499 aa28.83■■■□□ 2.21
UBE2D4-209ENST00000454428 ARHGAP5Q13017 1502 aa28.83■■■□□ 2.21
UBE2D4-209ENST00000454428 C3P01024 1663 aa28.83■■■□□ 2.21
UBE2D4-209ENST00000454428 ABCA6Q8N139 1617 aa28.82■■■□□ 2.2
UBE2D4-209ENST00000454428 LRRIQ1Q96JM4 1722 aa28.82■■■□□ 2.2
UBE2D4-209ENST00000454428 TROQ12816 1431 aaPredicted RBP28.81■■■□□ 2.2
UBE2D4-209ENST00000454428 ATP1B4Q9UN42 357 aaPredicted RBP28.81■■■□□ 2.2
UBE2D4-209ENST00000454428 CDC42BPBQ9Y5S2 1711 aa28.79■■■□□ 2.2
UBE2D4-209ENST00000454428 PTPRTO14522 1441 aa28.77■■■□□ 2.2
UBE2D4-209ENST00000454428 CDK11AQ9UQ88 783 aaPredicted RBP28.76■■■□□ 2.19
UBE2D4-209ENST00000454428 MLH3Q9UHC1 1453 aa28.76■■■□□ 2.19
UBE2D4-209ENST00000454428 SOCS7O14512 581 aa28.75■■■□□ 2.19
UBE2D4-209ENST00000454428 LTBP4Q8N2S1 1624 aa28.75■■■□□ 2.19
UBE2D4-209ENST00000454428 AGLP35573 1532 aa28.74■■■□□ 2.19
UBE2D4-209ENST00000454428 TRAPPC8Q9Y2L5 1435 aa28.71■■■□□ 2.19
UBE2D4-209ENST00000454428 ABCC1P33527 1531 aa28.7■■■□□ 2.19
UBE2D4-209ENST00000454428 EHMT2Q96KQ7 1210 aa28.7■■■□□ 2.18
UBE2D4-209ENST00000454428 CLIP1P30622 1438 aa28.69■■■□□ 2.18
UBE2D4-209ENST00000454428 PREX2Q70Z35 1606 aa28.69■■■□□ 2.18
UBE2D4-209ENST00000454428 SPATA31D1Q6ZQQ2 1576 aa28.69■■■□□ 2.18
UBE2D4-209ENST00000454428 ITSN2Q9NZM3 1697 aa28.68■■■□□ 2.18
UBE2D4-209ENST00000454428 MYT1LQ9UL68 1186 aa28.68■■■□□ 2.18
UBE2D4-209ENST00000454428 UBTFP17480 764 aaKnown RBP28.67■■■□□ 2.18
UBE2D4-209ENST00000454428 KIDINS220Q9ULH0 1771 aa28.67■■■□□ 2.18
UBE2D4-209ENST00000454428 NCOA1Q15788 1441 aa28.66■■■□□ 2.18
UBE2D4-209ENST00000454428 IQSEC2Q5JU85 1478 aa28.62■■■□□ 2.17
UBE2D4-209ENST00000454428 CDC42BPAQ5VT25 1732 aa28.58■■■□□ 2.17
UBE2D4-209ENST00000454428 CNTLNQ9NXG0 1405 aa28.58■■■□□ 2.17
UBE2D4-209ENST00000454428 CAMSAP1Q5T5Y3 1602 aa28.56■■■□□ 2.16
UBE2D4-209ENST00000454428 ESF1Q9H501 851 aaKnown RBP28.56■■■□□ 2.16
UBE2D4-209ENST00000454428 MROH2AA6NES4 1674 aa28.55■■■□□ 2.16
UBE2D4-209ENST00000454428 SAMD9LQ8IVG5 1584 aa28.54■■■□□ 2.16
UBE2D4-209ENST00000454428 NPATQ14207 1427 aa28.52■■■□□ 2.16
UBE2D4-209ENST00000454428 CASKIN1Q8WXD9 1431 aa28.51■■■□□ 2.15
UBE2D4-209ENST00000454428 CCDC18Q5T9S5 1454 aa28.5■■■□□ 2.15
UBE2D4-209ENST00000454428 ZMYM3Q14202 1370 aa28.48■■■□□ 2.15
UBE2D4-209ENST00000454428 SUPT6HQ7KZ85 1726 aaKnown RBP28.46■■■□□ 2.15
UBE2D4-209ENST00000454428 NCKAP5LQ9HCH0 1330 aa28.45■■■□□ 2.15
UBE2D4-209ENST00000454428 SYCP2Q9BX26 1530 aa28.44■■■□□ 2.14
UBE2D4-209ENST00000454428 ZNF142P52746 1687 aaPredicted RBP28.44■■■□□ 2.14
UBE2D4-209ENST00000454428 ZNF335Q9H4Z2 1342 aaPredicted RBP28.43■■■□□ 2.14
UBE2D4-209ENST00000454428 CLTCQ00610 1675 aaKnown RBP28.43■■■□□ 2.14
UBE2D4-209ENST00000454428 PLXNC1O60486 1568 aa28.42■■■□□ 2.14
UBE2D4-209ENST00000454428 MYO3AQ8NEV4 1616 aa28.42■■■□□ 2.14
UBE2D4-209ENST00000454428 GPATCH8Q9UKJ3 1502 aaKnown RBP28.4■■■□□ 2.14
UBE2D4-209ENST00000454428 INO80Q9ULG1 1556 aaPredicted RBP28.38■■■□□ 2.13
UBE2D4-209ENST00000454428 PLA2R1Q13018 1463 aa28.38■■■□□ 2.13
UBE2D4-209ENST00000454428 TCOF1Q13428 1488 aaKnown RBP28.38■■■□□ 2.13
UBE2D4-209ENST00000454428 SPAG9O60271 1321 aaKnown RBP28.38■■■□□ 2.13
UBE2D4-209ENST00000454428 ATP7AQ04656 1500 aa28.38■■■□□ 2.13
UBE2D4-209ENST00000454428 PTPRKQ15262 1439 aa28.37■■■□□ 2.13
UBE2D4-209ENST00000454428 HNRNPMP52272 730 aaKnown RBP eCLIP28.37■■■□□ 2.13
UBE2D4-209ENST00000454428 ZNF777Q9ULD5 760 aaPredicted RBP28.37■■■□□ 2.13
UBE2D4-209ENST00000454428 CEP170BQ9Y4F5 1589 aaPredicted RBP28.37■■■□□ 2.13
UBE2D4-209ENST00000454428 FYCO1Q9BQS8 1478 aa28.34■■■□□ 2.13
UBE2D4-209ENST00000454428 UBAP1LF5GYI3 381 aa28.34■■■□□ 2.13
UBE2D4-209ENST00000454428 A2MP01023 1474 aa28.33■■■□□ 2.13
UBE2D4-209ENST00000454428 PKD2Q13563 968 aa28.32■■■□□ 2.12
UBE2D4-209ENST00000454428 KIAA1107Q9UPP5 1409 aa28.32■■■□□ 2.12
UBE2D4-209ENST00000454428 CHIC1Q5VXU3 224 aa28.28■■■□□ 2.12
UBE2D4-209ENST00000454428 PLEKHH2Q8IVE3 1493 aa28.24■■■□□ 2.11
UBE2D4-209ENST00000454428 GGT6Q6P531 493 aa28.24■■■□□ 2.11
UBE2D4-209ENST00000454428 DNMT1P26358 1616 aaKnown RBP28.23■■■□□ 2.11
UBE2D4-209ENST00000454428 ADGBQ8N7X0 1667 aa28.23■■■□□ 2.11
UBE2D4-209ENST00000454428 CFDP1Q9UEE9 299 aaPredicted RBP28.21■■■□□ 2.11
UBE2D4-209ENST00000454428 PPP6R1Q9UPN7 881 aa28.21■■■□□ 2.11
UBE2D4-209ENST00000454428 A2ML1A8K2U0 1454 aa28.21■■■□□ 2.11
UBE2D4-209ENST00000454428 NEURL4Q96JN8 1562 aa28.18■■■□□ 2.1
UBE2D4-209ENST00000454428 CCNB3Q8WWL7 1395 aa28.17■■■□□ 2.1
UBE2D4-209ENST00000454428 MBD5Q9P267 1494 aa28.15■■■□□ 2.1
UBE2D4-209ENST00000454428 POLR1AO95602 1720 aaPredicted RBP28.15■■■□□ 2.1
UBE2D4-209ENST00000454428 ZNF644Q9H582 1327 aaPredicted RBP28.15■■■□□ 2.1
UBE2D4-209ENST00000454428 MED1Q15648 1581 aaPredicted RBP28.14■■■□□ 2.1
UBE2D4-209ENST00000454428 HSPA1LP34931 641 aa28.13■■■□□ 2.09
UBE2D4-209ENST00000454428 TIAM1Q13009 1591 aa28.12■■■□□ 2.09
UBE2D4-209ENST00000454428 CPS1P31327 1500 aa28.09■■■□□ 2.09
UBE2D4-209ENST00000454428 SHANK2Q9UPX8 1470 aa28.08■■■□□ 2.09
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms