RNA–Protein interactions for RNA: ENST00000444458.5

CCDC88A-208, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 4,236 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-208ENST00000444458 KDM4CQ9H3R0 1056 aa3.68□□□□□ -1.82
CCDC88A-208ENST00000444458 EIF5BO60841 1220 aaKnown RBP3.68□□□□□ -1.82
CCDC88A-208ENST00000444458 ZMYND10O75800 440 aa3.68□□□□□ -1.82
CCDC88A-208ENST00000444458 MKRN3Q13064 507 aaKnown RBP3.68□□□□□ -1.82
CCDC88A-208ENST00000444458 E2F4Q16254 413 aa3.68□□□□□ -1.82
CCDC88A-208ENST00000444458 CCDC97Q96F63 343 aaPredicted RBP3.67□□□□□ -1.82
CCDC88A-208ENST00000444458 LOC105371045A0A1W2PR82 267 aa3.67□□□□□ -1.82
CCDC88A-208ENST00000444458 ZNF316A6NFI3 1004 aaPredicted RBP3.67□□□□□ -1.82
CCDC88A-208ENST00000444458 BARGINQ6ZT62 677 aa3.67□□□□□ -1.82
CCDC88A-208ENST00000444458 TESPA1A2RU30 521 aaPredicted RBP3.67□□□□□ -1.82
CCDC88A-208ENST00000444458 CADPS2Q86UW7 1296 aa3.67□□□□□ -1.82
CCDC88A-208ENST00000444458 ATP1B4Q9UN42 357 aaPredicted RBP3.67□□□□□ -1.82
CCDC88A-208ENST00000444458 POTEGQ6S5H5 508 aa3.66□□□□□ -1.82
CCDC88A-208ENST00000444458 HSP90B1P14625 803 aaKnown RBP3.65□□□□□ -1.82
CCDC88A-208ENST00000444458 GPIHBP1Q8IV16 184 aa3.65□□□□□ -1.82
CCDC88A-208ENST00000444458 SPDYE1Q8NFV5 336 aaPredicted RBP3.65□□□□□ -1.82
CCDC88A-208ENST00000444458 FBXW7Q969H0 707 aa3.65□□□□□ -1.83
CCDC88A-208ENST00000444458 MTMR7Q9Y216 660 aa3.65□□□□□ -1.83
CCDC88A-208ENST00000444458 GZF1Q9H116 711 aaPredicted RBP3.64□□□□□ -1.83
CCDC88A-208ENST00000444458 PDE4DQ08499 809 aa3.64□□□□□ -1.83
CCDC88A-208ENST00000444458 PRKAR2AP13861 404 aaKnown RBP3.63□□□□□ -1.83
CCDC88A-208ENST00000444458 MFAP1P55081 439 aaKnown RBP3.63□□□□□ -1.83
CCDC88A-208ENST00000444458 FOXD4L5Q5VV16 416 aaPredicted RBP3.63□□□□□ -1.83
CCDC88A-208ENST00000444458 FOXD4L4Q8WXT5 416 aaPredicted RBP3.63□□□□□ -1.83
CCDC88A-208ENST00000444458 E9PSI1 815 aa3.63□□□□□ -1.83
CCDC88A-208ENST00000444458 IGSF3O75054 1194 aa3.63□□□□□ -1.83
CCDC88A-208ENST00000444458 USP35Q9P2H5 1018 aa3.63□□□□□ -1.83
CCDC88A-208ENST00000444458 CLUAP1Q96AJ1 413 aa3.63□□□□□ -1.83
CCDC88A-208ENST00000444458 DDRGK1Q96HY6 314 aa3.62□□□□□ -1.83
CCDC88A-208ENST00000444458 TRAIPQ9BWF2 469 aa3.62□□□□□ -1.83
CCDC88A-208ENST00000444458 SGIP1Q9BQI5 828 aa3.62□□□□□ -1.83
CCDC88A-208ENST00000444458 ZNF777Q9ULD5 760 aaPredicted RBP3.62□□□□□ -1.83
CCDC88A-208ENST00000444458 FARP1Q9Y4F1 1045 aaPredicted RBP3.62□□□□□ -1.83
CCDC88A-208ENST00000444458 TRAK2O60296 914 aa3.62□□□□□ -1.83
CCDC88A-208ENST00000444458 NUBP1P53384 320 aa3.62□□□□□ -1.83
CCDC88A-208ENST00000444458 LMTK3Q96Q04 1460 aa3.62□□□□□ -1.83
CCDC88A-208ENST00000444458 TRIM66O15016 1216 aa3.62□□□□□ -1.83
CCDC88A-208ENST00000444458 PYGBP11216 843 aa3.61□□□□□ -1.83
CCDC88A-208ENST00000444458 FAM117AQ9C073 453 aa3.61□□□□□ -1.83
CCDC88A-208ENST00000444458 SERPINA10Q9UK55 444 aa3.61□□□□□ -1.83
CCDC88A-208ENST00000444458 A6NJR5 290 aa3.6□□□□□ -1.83
CCDC88A-208ENST00000444458 RBM26Q5T8P6 1007 aaKnown RBP3.6□□□□□ -1.83
CCDC88A-208ENST00000444458 PCMTD1Q96MG8 357 aaPredicted RBP3.59□□□□□ -1.83
CCDC88A-208ENST00000444458 ATMINO43313 823 aaPredicted RBP3.59□□□□□ -1.83
CCDC88A-208ENST00000444458 RGS22Q8NE09 1264 aa3.59□□□□□ -1.83
CCDC88A-208ENST00000444458 ZNF428Q96B54 188 aa3.59□□□□□ -1.84
CCDC88A-208ENST00000444458 LARP6Q9BRS8 491 aaKnown RBP3.59□□□□□ -1.84
CCDC88A-208ENST00000444458 CHRM1P11229 460 aaPredicted RBP3.58□□□□□ -1.84
CCDC88A-208ENST00000444458 ACIN1Q9UKV3 1341 aaKnown RBP3.58□□□□□ -1.84
CCDC88A-208ENST00000444458 RETREG2Q8NC44 543 aa3.58□□□□□ -1.84
CCDC88A-208ENST00000444458 PROSER2Q86WR7 435 aaPredicted RBP3.57□□□□□ -1.84
CCDC88A-208ENST00000444458 PDE4CQ08493 712 aa3.57□□□□□ -1.84
CCDC88A-208ENST00000444458 TTLL12Q14166 644 aaPredicted RBP3.57□□□□□ -1.84
CCDC88A-208ENST00000444458 RBAK-RBAKDNI3L0D1 243 aa3.57□□□□□ -1.84
CCDC88A-208ENST00000444458 POLR3GLQ9BT43 218 aa3.57□□□□□ -1.84
CCDC88A-208ENST00000444458 PATL2C9JE40 543 aaKnown RBP3.56□□□□□ -1.84
CCDC88A-208ENST00000444458 PDE4AP27815 886 aa3.56□□□□□ -1.84
CCDC88A-208ENST00000444458 ZNF467Q7Z7K2 595 aaPredicted RBP3.56□□□□□ -1.84
CCDC88A-208ENST00000444458 PUS7Q96PZ0 661 aaKnown RBP3.56□□□□□ -1.84
CCDC88A-208ENST00000444458 PDAP1Q13442 181 aaKnown RBP3.55□□□□□ -1.84
CCDC88A-208ENST00000444458 DDX27Q96GQ7 796 aaKnown RBP3.54□□□□□ -1.84
CCDC88A-208ENST00000444458 MLLT3P42568 568 aaPredicted RBP3.54□□□□□ -1.84
CCDC88A-208ENST00000444458 IFFO2Q5TF58 517 aa3.54□□□□□ -1.84
CCDC88A-208ENST00000444458 RASEFQ8IZ41 740 aa3.54□□□□□ -1.84
CCDC88A-208ENST00000444458 PLEKHG3A1L390 1219 aa3.54□□□□□ -1.84
CCDC88A-208ENST00000444458 NUTM2FA1L443 756 aa3.54□□□□□ -1.84
CCDC88A-208ENST00000444458 NLRP6P59044 892 aa3.54□□□□□ -1.84
CCDC88A-208ENST00000444458 CCDC61Q9Y6R9 512 aa3.54□□□□□ -1.84
CCDC88A-208ENST00000444458 WWC1Q8IX03 1113 aa3.53□□□□□ -1.84
CCDC88A-208ENST00000444458 MFRPQ9BY79 579 aa3.53□□□□□ -1.84
CCDC88A-208ENST00000444458 MCM6Q14566 821 aa3.53□□□□□ -1.84
CCDC88A-208ENST00000444458 ZNF330Q9Y3S2 320 aaPredicted RBP3.53□□□□□ -1.84
CCDC88A-208ENST00000444458 MINK1Q8N4C8 1332 aaPredicted RBP3.53□□□□□ -1.85
CCDC88A-208ENST00000444458 RSPH4AQ5TD94 716 aa3.52□□□□□ -1.85
CCDC88A-208ENST00000444458 CLEC11AQ9Y240 323 aa3.52□□□□□ -1.85
CCDC88A-208ENST00000444458 PPP1R37O75864 691 aa3.52□□□□□ -1.85
CCDC88A-208ENST00000444458 CCDC102AQ96A19 550 aa3.52□□□□□ -1.85
CCDC88A-208ENST00000444458 CCDC27Q2M243 656 aa3.52□□□□□ -1.85
CCDC88A-208ENST00000444458 PARP9Q8IXQ6 854 aa3.52□□□□□ -1.85
CCDC88A-208ENST00000444458 PPP1R15AO75807 674 aaPredicted RBP3.51□□□□□ -1.85
CCDC88A-208ENST00000444458 IRF5Q13568 498 aa3.51□□□□□ -1.85
CCDC88A-208ENST00000444458 GALR2O43603 387 aaPredicted RBP3.51□□□□□ -1.85
CCDC88A-208ENST00000444458 PRR29P0C7W0 189 aa3.51□□□□□ -1.85
CCDC88A-208ENST00000444458 CHMP4AQ9BY43 222 aa3.51□□□□□ -1.85
CCDC88A-208ENST00000444458 ONECUT3O60422 494 aaPredicted RBP3.51□□□□□ -1.85
CCDC88A-208ENST00000444458 PSEN1P49768 467 aa3.51□□□□□ -1.85
CCDC88A-208ENST00000444458 CALR3Q96L12 384 aaKnown RBP3.51□□□□□ -1.85
CCDC88A-208ENST00000444458 GOPCQ9HD26 462 aa3.51□□□□□ -1.85
CCDC88A-208ENST00000444458 IGSF5Q9NSI5 407 aa3.51□□□□□ -1.85
CCDC88A-208ENST00000444458 PPM1GO15355 546 aaPredicted RBP3.5□□□□□ -1.85
CCDC88A-208ENST00000444458 IER5LQ5T953 404 aa3.5□□□□□ -1.85
CCDC88A-208ENST00000444458 POM121Q96HA1 1249 aa3.5□□□□□ -1.85
CCDC88A-208ENST00000444458 CSB-PGBD3P0DP91 1061 aa3.5□□□□□ -1.85
CCDC88A-208ENST00000444458 C7P10643 843 aa3.5□□□□□ -1.85
CCDC88A-208ENST00000444458 CHADLQ6NUI6 762 aa3.5□□□□□ -1.85
CCDC88A-208ENST00000444458 TSPYL2Q9H2G4 693 aaPredicted RBP3.5□□□□□ -1.85
CCDC88A-208ENST00000444458 PCDHB8Q9UN66 801 aa3.5□□□□□ -1.85
CCDC88A-208ENST00000444458 PCDHB13Q9Y5F0 798 aa3.5□□□□□ -1.85
CCDC88A-208ENST00000444458 CD44P16070 742 aaKnown RBP3.5□□□□□ -1.85
CCDC88A-208ENST00000444458 MAP2K5Q13163 448 aa3.5□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms