RNA–Protein interactions for RNA: ENST00000441089.1

PTPN4-206, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 671 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-206ENST00000441089 IFNLR1Q8IU57 520 aaPredicted RBP9.71□□□□□ -0.86
PTPN4-206ENST00000441089 BOLA1Q9Y3E2 137 aa9.68□□□□□ -0.86
PTPN4-206ENST00000441089 SMARCA2P51531 1590 aa9.67□□□□□ -0.86
PTPN4-206ENST00000441089 BAZ1AQ9NRL2 1556 aaPredicted RBP9.67□□□□□ -0.86
PTPN4-206ENST00000441089 LAMC3Q9Y6N6 1575 aa9.66□□□□□ -0.86
PTPN4-206ENST00000441089 HMGXB3Q12766 1538 aa9.66□□□□□ -0.86
PTPN4-206ENST00000441089 KIF21AQ7Z4S6 1674 aa9.65□□□□□ -0.86
PTPN4-206ENST00000441089 TMEM92Q6UXU6 159 aa9.64□□□□□ -0.87
PTPN4-206ENST00000441089 HOXB1P14653 301 aaPredicted RBP9.63□□□□□ -0.87
PTPN4-206ENST00000441089 CIZ1Q9ULV3 898 aaPredicted RBP9.63□□□□□ -0.87
PTPN4-206ENST00000441089 ATAD2BQ9ULI0 1458 aa9.62□□□□□ -0.87
PTPN4-206ENST00000441089 EFCAB3Q8N7B9 438 aa9.61□□□□□ -0.87
PTPN4-206ENST00000441089 SPOCK2Q92563 424 aa9.61□□□□□ -0.87
PTPN4-206ENST00000441089 PDS5BQ9NTI5 1447 aa9.61□□□□□ -0.87
PTPN4-206ENST00000441089 RIMBP3CA6NJZ7 1639 aa9.58□□□□□ -0.88
PTPN4-206ENST00000441089 RIMBP3BA6NNM3 1639 aa9.58□□□□□ -0.88
PTPN4-206ENST00000441089 RIMBP3Q9UFD9 1639 aa9.58□□□□□ -0.88
PTPN4-206ENST00000441089 ERBB3P21860 1342 aa9.56□□□□□ -0.88
PTPN4-206ENST00000441089 VARS2Q5ST30 1063 aaKnown RBP9.55□□□□□ -0.88
PTPN4-206ENST00000441089 ZNF710Q8N1W2 664 aa9.55□□□□□ -0.88
PTPN4-206ENST00000441089 MRC2Q9UBG0 1479 aa9.54□□□□□ -0.88
PTPN4-206ENST00000441089 MICALL2Q8IY33 904 aa9.54□□□□□ -0.88
PTPN4-206ENST00000441089 MS4A4AQ96JQ5 239 aa9.54□□□□□ -0.88
PTPN4-206ENST00000441089 WDR62O43379 1518 aa9.53□□□□□ -0.88
PTPN4-206ENST00000441089 G3V3G9 751 aa9.53□□□□□ -0.88
PTPN4-206ENST00000441089 DOK7Q18PE1 504 aa9.53□□□□□ -0.88
PTPN4-206ENST00000441089 BAZ1BQ9UIG0 1483 aaKnown RBP9.53□□□□□ -0.88
PTPN4-206ENST00000441089 RNF25Q96BH1 459 aaPredicted RBP9.52□□□□□ -0.89
PTPN4-206ENST00000441089 GPR153Q6NV75 609 aa9.5□□□□□ -0.89
PTPN4-206ENST00000441089 SMARCA4P51532 1647 aa9.49□□□□□ -0.89
PTPN4-206ENST00000441089 RNF166Q96A37 237 aaPredicted RBP9.49□□□□□ -0.89
PTPN4-206ENST00000441089 ARHGEF11O15085 1522 aa9.48□□□□□ -0.89
PTPN4-206ENST00000441089 KHSRPQ92945 711 aaKnown RBP eCLIP9.46□□□□□ -0.9
PTPN4-206ENST00000441089 PHF8Q9UPP1 1060 aa9.46□□□□□ -0.9
PTPN4-206ENST00000441089 ZNF687Q8N1G0 1237 aa9.45□□□□□ -0.9
PTPN4-206ENST00000441089 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP9.44□□□□□ -0.9
PTPN4-206ENST00000441089 ZFP91Q96JP5 570 aaPredicted RBP9.44□□□□□ -0.9
PTPN4-206ENST00000441089 MYT1LQ9UL68 1186 aa9.44□□□□□ -0.9
PTPN4-206ENST00000441089 CYB5RLQ6IPT4 315 aa9.43□□□□□ -0.9
PTPN4-206ENST00000441089 PEG3Q9GZU2 1588 aa9.42□□□□□ -0.9
PTPN4-206ENST00000441089 CADPSQ9ULU8 1353 aa9.42□□□□□ -0.9
PTPN4-206ENST00000441089 ARSIQ5FYB1 569 aa9.42□□□□□ -0.9
PTPN4-206ENST00000441089 RIMBP2O15034 1052 aa9.4□□□□□ -0.9
PTPN4-206ENST00000441089 ZSWIM6Q9HCJ5 1215 aa9.4□□□□□ -0.9
PTPN4-206ENST00000441089 CEP164Q9UPV0 1460 aa9.4□□□□□ -0.91
PTPN4-206ENST00000441089 RIOK3O14730 519 aaKnown RBP9.37□□□□□ -0.91
PTPN4-206ENST00000441089 SOX12O15370 315 aa9.37□□□□□ -0.91
PTPN4-206ENST00000441089 POTEEQ6S8J3 1075 aa9.35□□□□□ -0.91
PTPN4-206ENST00000441089 FBXO22Q8NEZ5 403 aa9.35□□□□□ -0.91
PTPN4-206ENST00000441089 ANKRD13DQ6ZTN6 518 aa9.34□□□□□ -0.91
PTPN4-206ENST00000441089 ZNF316A6NFI3 1004 aaPredicted RBP9.33□□□□□ -0.92
PTPN4-206ENST00000441089 ARAP1Q96P48 1450 aa9.33□□□□□ -0.92
PTPN4-206ENST00000441089 VGFO15240 615 aaPredicted RBP9.31□□□□□ -0.92
PTPN4-206ENST00000441089 FANCD2Q9BXW9 1451 aa9.31□□□□□ -0.92
PTPN4-206ENST00000441089 KIF3CO14782 793 aa9.3□□□□□ -0.92
PTPN4-206ENST00000441089 LSM11P83369 360 aaKnown RBP eCLIP9.29□□□□□ -0.92
PTPN4-206ENST00000441089 MFRPQ9BY79 579 aa9.29□□□□□ -0.92
PTPN4-206ENST00000441089 NUDT7P0C024 238 aa9.28□□□□□ -0.92
PTPN4-206ENST00000441089 AXIN2Q9Y2T1 843 aa9.28□□□□□ -0.92
PTPN4-206ENST00000441089 RSF1Q96T23 1441 aaPredicted RBP9.28□□□□□ -0.92
PTPN4-206ENST00000441089 C2orf72A6NCS6 295 aa9.27□□□□□ -0.93
PTPN4-206ENST00000441089 BCL11BQ9C0K0 894 aaPredicted RBP9.27□□□□□ -0.93
PTPN4-206ENST00000441089 URB2Q14146 1524 aaKnown RBP9.25□□□□□ -0.93
PTPN4-206ENST00000441089 CHD1O14646 1710 aa9.25□□□□□ -0.93
PTPN4-206ENST00000441089 PTGER2P43116 358 aa9.24□□□□□ -0.93
PTPN4-206ENST00000441089 NLRP6P59044 892 aa9.24□□□□□ -0.93
PTPN4-206ENST00000441089 LHX6Q9UPM6 363 aa9.24□□□□□ -0.93
PTPN4-206ENST00000441089 IFT140Q96RY7 1462 aa9.23□□□□□ -0.93
PTPN4-206ENST00000441089 STK24Q9Y6E0 443 aa9.21□□□□□ -0.94
PTPN4-206ENST00000441089 ZNF608Q9ULD9 1512 aaPredicted RBP9.21□□□□□ -0.94
PTPN4-206ENST00000441089 MROH2BQ7Z745 1585 aa9.2□□□□□ -0.94
PTPN4-206ENST00000441089 PCDHGA4Q9Y5G9 962 aa9.2□□□□□ -0.94
PTPN4-206ENST00000441089 CFTRP13569 1480 aa9.2□□□□□ -0.94
PTPN4-206ENST00000441089 EIF4G3O43432 1585 aaKnown RBP9.18□□□□□ -0.94
PTPN4-206ENST00000441089 PPP1R37O75864 691 aa9.16□□□□□ -0.94
PTPN4-206ENST00000441089 PRDM2Q13029 1718 aa9.15□□□□□ -0.94
PTPN4-206ENST00000441089 KDM4FA0A1W2PPD8 638 aa9.15□□□□□ -0.94
PTPN4-206ENST00000441089 SLC34A2O95436 690 aa9.14□□□□□ -0.95
PTPN4-206ENST00000441089 PBX2P40425 430 aa9.14□□□□□ -0.95
PTPN4-206ENST00000441089 STK25O00506 426 aa9.13□□□□□ -0.95
PTPN4-206ENST00000441089 PLA2G2EQ9NZK7 142 aa9.13□□□□□ -0.95
PTPN4-206ENST00000441089 DMRTA1Q5VZB9 504 aa9.12□□□□□ -0.95
PTPN4-206ENST00000441089 ADGRD1Q6QNK2 874 aa9.12□□□□□ -0.95
PTPN4-206ENST00000441089 PSEN2P49810 448 aa9.1□□□□□ -0.95
PTPN4-206ENST00000441089 WIZO95785 1651 aa9.09□□□□□ -0.95
PTPN4-206ENST00000441089 CLASP1Q7Z460 1538 aa9.09□□□□□ -0.95
PTPN4-206ENST00000441089 ABCC8Q09428 1581 aa9.08□□□□□ -0.96
PTPN4-206ENST00000441089 RGL2O15211 777 aa9.08□□□□□ -0.96
PTPN4-206ENST00000441089 HRO43593 1189 aa9.08□□□□□ -0.96
PTPN4-206ENST00000441089 SYNJ1O43426 1573 aa9.07□□□□□ -0.96
PTPN4-206ENST00000441089 TOPBP1Q92547 1522 aa9.07□□□□□ -0.96
PTPN4-206ENST00000441089 AQRO60306 1485 aaKnown RBP eCLIP9.07□□□□□ -0.96
PTPN4-206ENST00000441089 ARHGAP33O14559 1287 aa9.06□□□□□ -0.96
PTPN4-206ENST00000441089 TMC2Q8TDI7 906 aa9.06□□□□□ -0.96
PTPN4-206ENST00000441089 HCSTQ9UBK5 93 aa9.06□□□□□ -0.96
PTPN4-206ENST00000441089 PKD2Q13563 968 aa9.05□□□□□ -0.96
PTPN4-206ENST00000441089 TARBP1Q13395 1621 aaKnown RBP9.05□□□□□ -0.96
PTPN4-206ENST00000441089 GAPVD1Q14C86 1478 aa9.04□□□□□ -0.96
PTPN4-206ENST00000441089 KIF13AQ9H1H9 1805 aa9.04□□□□□ -0.96
PTPN4-206ENST00000441089 ECM2O94769 699 aaPredicted RBP9.04□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 98.1 ms