RNA–Protein interactions for RNA: ENST00000437340.5

CPNE1-216, Transcript of copine 1, humanhuman

TSL 1 (best)

Gene CPNE1, Length 1,755 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-216ENST00000437340 DNMT1P26358 1616 aaKnown RBP37.43■■■■□ 3.58
CPNE1-216ENST00000437340 ABCC10Q5T3U5 1492 aa37.42■■■■□ 3.58
CPNE1-216ENST00000437340 DAPK1P53355 1430 aa37.42■■■■□ 3.58
CPNE1-216ENST00000437340 TIMELESSQ9UNS1 1208 aa37.41■■■■□ 3.58
CPNE1-216ENST00000437340 ROCK1Q13464 1354 aa37.41■■■■□ 3.58
CPNE1-216ENST00000437340 CDC42BPAQ5VT25 1732 aa37.4■■■■□ 3.58
CPNE1-216ENST00000437340 ABCC5O15440 1437 aa37.36■■■■□ 3.57
CPNE1-216ENST00000437340 ACIN1Q9UKV3 1341 aaKnown RBP37.36■■■■□ 3.57
CPNE1-216ENST00000437340 CFDP1Q9UEE9 299 aaPredicted RBP37.36■■■■□ 3.57
CPNE1-216ENST00000437340 CHIC2Q9UKJ5 165 aa37.35■■■■□ 3.57
CPNE1-216ENST00000437340 RRP7BPQ9NSQ0 103 aa37.34■■■■□ 3.57
CPNE1-216ENST00000437340 CAMSAP2Q08AD1 1489 aa37.33■■■■□ 3.57
CPNE1-216ENST00000437340 TTC37Q6PGP7 1564 aa37.33■■■■□ 3.57
CPNE1-216ENST00000437340 CYB5RLQ6IPT4 315 aa37.31■■■■□ 3.56
CPNE1-216ENST00000437340 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP37.31■■■■□ 3.561e-38■■□□□ 13.2
CPNE1-216ENST00000437340 ZNF644Q9H582 1327 aaPredicted RBP37.3■■■■□ 3.56
CPNE1-216ENST00000437340 WDR7Q9Y4E6 1490 aa37.3■■■■□ 3.56
CPNE1-216ENST00000437340 SIN3AQ96ST3 1273 aa37.25■■■■□ 3.55
CPNE1-216ENST00000437340 ASXL2Q76L83 1435 aa37.25■■■■□ 3.55
CPNE1-216ENST00000437340 PREX2Q70Z35 1606 aa37.25■■■■□ 3.55
CPNE1-216ENST00000437340 CDC42BPBQ9Y5S2 1711 aa37.23■■■■□ 3.55
CPNE1-216ENST00000437340 NPM1P06748 294 aaKnown RBP eCLIP37.23■■■■□ 3.55
CPNE1-216ENST00000437340 KCNH8Q96L42 1107 aa37.23■■■■□ 3.55
CPNE1-216ENST00000437340 MYO5CQ9NQX4 1742 aa37.22■■■■□ 3.55
CPNE1-216ENST00000437340 NEUROD1Q13562 356 aa37.19■■■■□ 3.54
CPNE1-216ENST00000437340 KDM6BO15054 1643 aa37.17■■■■□ 3.54
CPNE1-216ENST00000437340 ADGRL2O95490 1459 aa37.14■■■■□ 3.54
CPNE1-216ENST00000437340 CROCC2H7BZ55 1655 aa37.13■■■■□ 3.53
CPNE1-216ENST00000437340 ADGBQ8N7X0 1667 aa37.12■■■■□ 3.53
CPNE1-216ENST00000437340 ABCA9Q8IUA7 1624 aa37.1■■■■□ 3.53
CPNE1-216ENST00000437340 ZNF777Q9ULD5 760 aaPredicted RBP37.1■■■■□ 3.53
CPNE1-216ENST00000437340 NCOA1Q15788 1441 aa37.08■■■■□ 3.53
CPNE1-216ENST00000437340 TRIM52Q96A61 297 aa37.07■■■■□ 3.53
CPNE1-216ENST00000437340 SHANK2Q9UPX8 1470 aa37.07■■■■□ 3.52
CPNE1-216ENST00000437340 ARHGAP5Q13017 1502 aa37.05■■■■□ 3.52
CPNE1-216ENST00000437340 SAMD9LQ8IVG5 1584 aa37.05■■■■□ 3.52
CPNE1-216ENST00000437340 DENND4BO75064 1496 aaPredicted RBP37.04■■■■□ 3.52
CPNE1-216ENST00000437340 PPP1R15AO75807 674 aaPredicted RBP37.02■■■■□ 3.52
CPNE1-216ENST00000437340 TONSLQ96HA7 1378 aa37.02■■■■□ 3.52
CPNE1-216ENST00000437340 ANKRD30AQ9BXX3 1397 aa37.01■■■■□ 3.52
CPNE1-216ENST00000437340 PLCH2O75038 1416 aa37.01■■■■□ 3.52
CPNE1-216ENST00000437340 MPHOSPH9Q99550 1183 aa37.01■■■■□ 3.51
CPNE1-216ENST00000437340 ARHGEF5Q12774 1597 aa36.99■■■■□ 3.51
CPNE1-216ENST00000437340 ARAP3Q8WWN8 1544 aa36.95■■■■□ 3.51
CPNE1-216ENST00000437340 C9orf84Q5VXU9 1444 aa36.92■■■■□ 3.5
CPNE1-216ENST00000437340 MBD5Q9P267 1494 aa36.91■■■■□ 3.5
CPNE1-216ENST00000437340 RSPH4AQ5TD94 716 aa36.91■■■■□ 3.5
CPNE1-216ENST00000437340 SYCP2Q9BX26 1530 aa36.88■■■■□ 3.49
CPNE1-216ENST00000437340 TSPY4P0CV99 314 aa36.88■■■■□ 3.49
CPNE1-216ENST00000437340 TSPY10P0CW01 314 aa36.88■■■■□ 3.49
CPNE1-216ENST00000437340 CCDC141Q6ZP82 1450 aa36.84■■■■□ 3.49
CPNE1-216ENST00000437340 ANKRD50Q9ULJ7 1429 aa36.83■■■■□ 3.49
CPNE1-216ENST00000437340 ABCC1P33527 1531 aa36.83■■■■□ 3.49
CPNE1-216ENST00000437340 EFCAB2Q5VUJ9 269 aa36.82■■■■□ 3.48
CPNE1-216ENST00000437340 PLEKHH2Q8IVE3 1493 aa36.81■■■■□ 3.48
CPNE1-216ENST00000437340 HNRNPMP52272 730 aaKnown RBP eCLIP36.81■■■■□ 3.481e-7■■■■□ 25.4
CPNE1-216ENST00000437340 ANKRD30BQ9BXX2 1392 aa36.8■■■■□ 3.48
CPNE1-216ENST00000437340 FANCAO15360 1455 aa36.8■■■■□ 3.48
CPNE1-216ENST00000437340 PZPP20742 1482 aa36.79■■■■□ 3.48
CPNE1-216ENST00000437340 DIP2BQ9P265 1576 aa36.79■■■■□ 3.48
CPNE1-216ENST00000437340 KIAA1107Q9UPP5 1409 aa36.78■■■■□ 3.48
CPNE1-216ENST00000437340 GLI2P10070 1586 aa36.78■■■■□ 3.48
CPNE1-216ENST00000437340 ARHGEF12Q9NZN5 1544 aa36.78■■■■□ 3.48
CPNE1-216ENST00000437340 MIER1Q8N108 512 aa36.78■■■■□ 3.48
CPNE1-216ENST00000437340 SLC4A1APQ9BWU0 796 aaKnown RBP36.78■■■■□ 3.48
CPNE1-216ENST00000437340 CD109Q6YHK3 1445 aa36.78■■■■□ 3.48
CPNE1-216ENST00000437340 MAP3K4Q9Y6R4 1608 aa36.77■■■■□ 3.48
CPNE1-216ENST00000437340 MAST1Q9Y2H9 1570 aa36.72■■■■□ 3.47
CPNE1-216ENST00000437340 KIF15Q9NS87 1388 aa36.71■■■■□ 3.47
CPNE1-216ENST00000437340 CFAP74Q9C0B2 1584 aa36.7■■■■□ 3.47
CPNE1-216ENST00000437340 RPRD2Q5VT52 1461 aaKnown RBP36.7■■■■□ 3.46
CPNE1-216ENST00000437340 FOXD1Q16676 465 aa36.66■■■■□ 3.46
CPNE1-216ENST00000437340 KDM5DQ9BY66 1539 aa36.66■■■■□ 3.46
CPNE1-216ENST00000437340 ADGRL1O94910 1474 aa36.63■■■■□ 3.46
CPNE1-216ENST00000437340 KIF13AQ9H1H9 1805 aa36.63■■■■□ 3.46
CPNE1-216ENST00000437340 TRAPPC8Q9Y2L5 1435 aa36.63■■■■□ 3.45
CPNE1-216ENST00000437340 DNAJC5Q9H3Z4 198 aa36.61■■■■□ 3.45
CPNE1-216ENST00000437340 FAM69CQ0P6D2 419 aa36.6■■■■□ 3.45
CPNE1-216ENST00000437340 NUP155O75694 1391 aa36.56■■■■□ 3.44
CPNE1-216ENST00000437340 TSPOAP1O95153 1857 aa36.56■■■■□ 3.44
CPNE1-216ENST00000437340 SCAPERQ9BY12 1400 aa36.56■■■■□ 3.44
CPNE1-216ENST00000437340 PLXNC1O60486 1568 aa36.55■■■■□ 3.44
CPNE1-216ENST00000437340 PPRC1Q5VV67 1664 aaKnown RBP36.54■■■■□ 3.44
CPNE1-216ENST00000437340 L3MBTL2Q969R5 705 aa36.54■■■■□ 3.44
CPNE1-216ENST00000437340 NEO1Q92859 1461 aa36.53■■■■□ 3.44
CPNE1-216ENST00000437340 TEX14Q8IWB6 1497 aa36.52■■■■□ 3.44
CPNE1-216ENST00000437340 CENPBP07199 599 aaPredicted RBP36.52■■■■□ 3.44
CPNE1-216ENST00000437340 PKD2Q13563 968 aa36.52■■■■□ 3.44
CPNE1-216ENST00000437340 AFAP1Q8N556 730 aa36.47■■■■□ 3.43
CPNE1-216ENST00000437340 ZFYVE16Q7Z3T8 1539 aa36.47■■■■□ 3.43
CPNE1-216ENST00000437340 INO80Q9ULG1 1556 aaPredicted RBP36.45■■■■□ 3.43
CPNE1-216ENST00000437340 DUOX2Q9NRD8 1548 aa36.42■■■■□ 3.42
CPNE1-216ENST00000437340 ZNF518AQ6AHZ1 1483 aa36.41■■■■□ 3.42
CPNE1-216ENST00000437340 POGZQ7Z3K3 1410 aa36.41■■■■□ 3.42
CPNE1-216ENST00000437340 ATP7AQ04656 1500 aa36.4■■■■□ 3.42
CPNE1-216ENST00000437340 SPAG9O60271 1321 aaKnown RBP36.4■■■■□ 3.42
CPNE1-216ENST00000437340 RTEL1-TNFRSF6BF6WH68 1400 aa36.4■■■■□ 3.42
CPNE1-216ENST00000437340 UNC13BO14795 1591 aa36.4■■■■□ 3.42
CPNE1-216ENST00000437340 KDM5CP41229 1560 aa36.38■■■■□ 3.41
CPNE1-216ENST00000437340 ERBINQ96RT1 1412 aa36.37■■■■□ 3.41
Retrieved 100 of 20,778 RNA–protein pairs in 50.8 ms