RNA–Protein interactions for RNA: ENST00000429416.7

SMARCA4-203, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

TSL 2 BASIC

Gene SMARCA4, Length 5,691 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-203ENST00000429416 CCDC9Q9Y3X0 531 aaKnown RBP22.61■■□□□ 1.21
SMARCA4-203ENST00000429416 MPHOSPH9Q99550 1183 aa22.6■■□□□ 1.21
SMARCA4-203ENST00000429416 IGF1RP08069 1367 aa22.6■■□□□ 1.21
SMARCA4-203ENST00000429416 MYH16Q9H6N6 1097 aa22.6■■□□□ 1.21
SMARCA4-203ENST00000429416 SETD5Q9C0A6 1442 aa22.59■■□□□ 1.21
SMARCA4-203ENST00000429416 FKBP8Q14318 412 aa22.58■■□□□ 1.21
SMARCA4-203ENST00000429416 NUTM2FA1L443 756 aa22.57■■□□□ 1.2
SMARCA4-203ENST00000429416 CSB-PGBD3P0DP91 1061 aa22.57■■□□□ 1.2
SMARCA4-203ENST00000429416 MRC2Q9UBG0 1479 aa22.55■■□□□ 1.2
SMARCA4-203ENST00000429416 HDGFL2Q7Z4V5 671 aaPredicted RBP22.54■■□□□ 1.2
SMARCA4-203ENST00000429416 HSP90AA1P07900 732 aaKnown RBP22.51■■□□□ 1.19
SMARCA4-203ENST00000429416 MORC1Q86VD1 984 aa22.5■■□□□ 1.19
SMARCA4-203ENST00000429416 GRIN2BQ13224 1484 aa22.5■■□□□ 1.19
SMARCA4-203ENST00000429416 MIER1Q8N108 512 aa22.48■■□□□ 1.19
SMARCA4-203ENST00000429416 NGDNQ8NEJ9 315 aaKnown RBP22.48■■□□□ 1.19
SMARCA4-203ENST00000429416 CCDC136Q96JN2 1154 aa22.48■■□□□ 1.19
SMARCA4-203ENST00000429416 UPF2Q9HAU5 1272 aaKnown RBP22.47■■□□□ 1.19
SMARCA4-203ENST00000429416 ROCK2O75116 1388 aaKnown RBP22.44■■□□□ 1.18
SMARCA4-203ENST00000429416 CFTRP13569 1480 aa22.44■■□□□ 1.18
SMARCA4-203ENST00000429416 PRG4Q92954 1404 aaPredicted RBP22.43■■□□□ 1.18
SMARCA4-203ENST00000429416 IRX6P78412 446 aaPredicted RBP22.42■■□□□ 1.18
SMARCA4-203ENST00000429416 RAB3GAP2Q9H2M9 1393 aa22.42■■□□□ 1.18
SMARCA4-203ENST00000429416 IFT140Q96RY7 1462 aa22.4■■□□□ 1.18
SMARCA4-203ENST00000429416 TRAK1Q9UPV9 953 aa22.39■■□□□ 1.18
SMARCA4-203ENST00000429416 ANP32AP39687 249 aaKnown RBP22.38■■□□□ 1.17
SMARCA4-203ENST00000429416 PNNQ9H307 717 aaKnown RBP22.38■■□□□ 1.17
SMARCA4-203ENST00000429416 FTSJ3Q8IY81 847 aaKnown RBP22.36■■□□□ 1.17
SMARCA4-203ENST00000429416 HSPA5P11021 654 aaKnown RBP22.35■■□□□ 1.17
SMARCA4-203ENST00000429416 RTF1Q92541 710 aaKnown RBP22.34■■□□□ 1.17
SMARCA4-203ENST00000429416 ZNF330Q9Y3S2 320 aaPredicted RBP22.33■■□□□ 1.17
SMARCA4-203ENST00000429416 TIMELESSQ9UNS1 1208 aa22.31■■□□□ 1.16
SMARCA4-203ENST00000429416 ZNF644Q9H582 1327 aaPredicted RBP22.3■■□□□ 1.16
SMARCA4-203ENST00000429416 VGFO15240 615 aaPredicted RBP22.3■■□□□ 1.16
SMARCA4-203ENST00000429416 PRDM2Q13029 1718 aa22.3■■□□□ 1.16
SMARCA4-203ENST00000429416 AFAP1Q8N556 730 aa22.3■■□□□ 1.16
SMARCA4-203ENST00000429416 FRAT1Q92837 279 aaPredicted RBP22.3■■□□□ 1.16
SMARCA4-203ENST00000429416 TERF2IPQ9NYB0 399 aa22.29■■□□□ 1.16
SMARCA4-203ENST00000429416 TOPBP1Q92547 1522 aa22.29■■□□□ 1.16
SMARCA4-203ENST00000429416 HMGXB3Q12766 1538 aa22.29■■□□□ 1.16
SMARCA4-203ENST00000429416 LTV1Q96GA3 475 aaPredicted RBP22.29■■□□□ 1.16
SMARCA4-203ENST00000429416 SUGP2Q8IX01 1082 aaKnown RBP eCLIP22.28■■□□□ 1.163e-7■■■■□ 26.2
SMARCA4-203ENST00000429416 EIF3AQ14152 1382 aaKnown RBP22.28■■□□□ 1.16
SMARCA4-203ENST00000429416 L3MBTL2Q969R5 705 aa22.28■■□□□ 1.16
SMARCA4-203ENST00000429416 SNAPC4Q5SXM2 1469 aa22.28■■□□□ 1.16
SMARCA4-203ENST00000429416 CCDC144AA2RUR9 1427 aa22.25■■□□□ 1.15
SMARCA4-203ENST00000429416 U2AF1L5P0DN76 240 aaPredicted RBP22.24■■□□□ 1.15
SMARCA4-203ENST00000429416 AMPHP49418 695 aa22.24■■□□□ 1.15
SMARCA4-203ENST00000429416 U2AF1Q01081 240 aaKnown RBP eCLIP22.24■■□□□ 1.15
SMARCA4-203ENST00000429416 POLA1P09884 1462 aaPredicted RBP22.23■■□□□ 1.15
SMARCA4-203ENST00000429416 OS9Q13438 667 aaPredicted RBP22.22■■□□□ 1.15
SMARCA4-203ENST00000429416 GOLGA2Q08379 1002 aa22.19■■□□□ 1.14
SMARCA4-203ENST00000429416 SYNJ2O15056 1496 aa22.19■■□□□ 1.14
SMARCA4-203ENST00000429416 MINK1Q8N4C8 1332 aaPredicted RBP22.18■■□□□ 1.14
SMARCA4-203ENST00000429416 MEX3CQ5U5Q3 659 aaKnown RBP22.18■■□□□ 1.14
SMARCA4-203ENST00000429416 EVA1CP58658 441 aa22.16■■□□□ 1.14
SMARCA4-203ENST00000429416 BICRAQ9NZM4 1560 aa22.15■■□□□ 1.14
SMARCA4-203ENST00000429416 KTN1Q86UP2 1357 aaKnown RBP22.15■■□□□ 1.14
SMARCA4-203ENST00000429416 RAPGEF3O95398 923 aa22.14■■□□□ 1.14
SMARCA4-203ENST00000429416 KIF15Q9NS87 1388 aa22.14■■□□□ 1.13
SMARCA4-203ENST00000429416 ARHGAP5Q13017 1502 aa22.13■■□□□ 1.13
SMARCA4-203ENST00000429416 MYOM3Q5VTT5 1437 aa22.13■■□□□ 1.13
SMARCA4-203ENST00000429416 UACAQ9BZF9 1416 aa22.13■■□□□ 1.13
SMARCA4-203ENST00000429416 ABCF1Q8NE71 845 aaKnown RBP eCLIP22.12■■□□□ 1.13
SMARCA4-203ENST00000429416 ATF3P18847 181 aa22.12■■□□□ 1.13
SMARCA4-203ENST00000429416 PSME1Q06323 249 aa22.1■■□□□ 1.13
SMARCA4-203ENST00000429416 CUX1P39880 1505 aa22.06■■□□□ 1.12
SMARCA4-203ENST00000429416 SYNJ1O43426 1573 aa22.06■■□□□ 1.12
SMARCA4-203ENST00000429416 ST20-MTHFSA0A0A6YYL1 179 aa22.04■■□□□ 1.12
SMARCA4-203ENST00000429416 TXNDC2Q86VQ3 553 aa22.04■■□□□ 1.12
SMARCA4-203ENST00000429416 DNMBPQ6XZF7 1577 aa22.04■■□□□ 1.12
SMARCA4-203ENST00000429416 LAMC3Q9Y6N6 1575 aa22.04■■□□□ 1.12
SMARCA4-203ENST00000429416 EVC2Q86UK5 1308 aa22.03■■□□□ 1.12
SMARCA4-203ENST00000429416 COG3Q96JB2 828 aa22.02■■□□□ 1.12
SMARCA4-203ENST00000429416 SUPT16HQ9Y5B9 1047 aaKnown RBP22.02■■□□□ 1.12
SMARCA4-203ENST00000429416 CHMP4BQ9H444 224 aaKnown RBP22.02■■□□□ 1.11
SMARCA4-203ENST00000429416 TAOK2Q9UL54 1235 aa22.02■■□□□ 1.11
SMARCA4-203ENST00000429416 SCAPERQ9BY12 1400 aa22.01■■□□□ 1.11
SMARCA4-203ENST00000429416 PHF23Q9BUL5 403 aaPredicted RBP22.01■■□□□ 1.11
SMARCA4-203ENST00000429416 MS4A1P11836 297 aa22■■□□□ 1.11
SMARCA4-203ENST00000429416 TMX4Q9H1E5 349 aaPredicted RBP22■■□□□ 1.11
SMARCA4-203ENST00000429416 CASC1Q6TDU7 716 aa21.99■■□□□ 1.11
SMARCA4-203ENST00000429416 PROSER2Q86WR7 435 aaPredicted RBP21.98■■□□□ 1.11
SMARCA4-203ENST00000429416 CALD1Q05682 793 aaKnown RBP21.98■■□□□ 1.11
SMARCA4-203ENST00000429416 MSH5O43196 834 aa21.97■■□□□ 1.11
SMARCA4-203ENST00000429416 FGD6Q6ZV73 1430 aa21.97■■□□□ 1.11
SMARCA4-203ENST00000429416 CASKIN1Q8WXD9 1431 aa21.97■■□□□ 1.11
SMARCA4-203ENST00000429416 ANKRD50Q9ULJ7 1429 aa21.95■■□□□ 1.1
SMARCA4-203ENST00000429416 RALBP1Q15311 655 aa21.95■■□□□ 1.1
SMARCA4-203ENST00000429416 THEMISQ8N1K5 641 aaPredicted RBP21.95■■□□□ 1.1
SMARCA4-203ENST00000429416 GTF2E1P29083 439 aaPredicted RBP21.94■■□□□ 1.1
SMARCA4-203ENST00000429416 TMEM132EQ6IEE7 984 aa21.94■■□□□ 1.1
SMARCA4-203ENST00000429416 SYTL4Q96C24 671 aaPredicted RBP21.93■■□□□ 1.1
SMARCA4-203ENST00000429416 STK31Q9BXU1 1019 aa21.93■■□□□ 1.1
SMARCA4-203ENST00000429416 NCOA2Q15596 1464 aa21.93■■□□□ 1.1
SMARCA4-203ENST00000429416 RGS3P49796 1198 aa21.92■■□□□ 1.1
SMARCA4-203ENST00000429416 APBB1O00213 710 aa21.91■■□□□ 1.1
SMARCA4-203ENST00000429416 PANK3Q9H999 370 aa21.91■■□□□ 1.1
SMARCA4-203ENST00000429416 PHLDB1Q86UU1 1377 aa21.91■■□□□ 1.1
SMARCA4-203ENST00000429416 CCDC146Q8IYE0 955 aa21.91■■□□□ 1.1
SMARCA4-203ENST00000429416 NUTM2GQ5VZR2 741 aa21.91■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms