RNA–Protein interactions for RNA: ENST00000427299.6

LINC00458-202, long intergenic non-protein coding RNA 458, humanhuman

TSL 1 (best) BASIC

Gene LINC00458, Length 1,030 nt, Biotype lincRNA, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00458-202ENST00000427299 MFRPQ9BY79 579 aa14.74□□□□□ -0.05
LINC00458-202ENST00000427299 HS3ST6Q96QI5 342 aa14.73□□□□□ -0.05
LINC00458-202ENST00000427299 FAM205CA6NFA0 338 aa14.71□□□□□ -0.05
LINC00458-202ENST00000427299 HOXB1P14653 301 aaPredicted RBP14.71□□□□□ -0.05
LINC00458-202ENST00000427299 ZNF710Q8N1W2 664 aa14.71□□□□□ -0.05
LINC00458-202ENST00000427299 RIMBP2O15034 1052 aa14.64□□□□□ -0.07
LINC00458-202ENST00000427299 KRTAP3-3Q9BYR6 98 aa14.64□□□□□ -0.07
LINC00458-202ENST00000427299 KRTAP3-2Q9BYR7 98 aa14.64□□□□□ -0.07
LINC00458-202ENST00000427299 ZSWIM6Q9HCJ5 1215 aa14.61□□□□□ -0.07
LINC00458-202ENST00000427299 GPR153Q6NV75 609 aa14.56□□□□□ -0.08
LINC00458-202ENST00000427299 ERBB3P21860 1342 aa14.56□□□□□ -0.08
LINC00458-202ENST00000427299 KIF3CO14782 793 aa14.54□□□□□ -0.08
LINC00458-202ENST00000427299 VARS2Q5ST30 1063 aaKnown RBP14.5□□□□□ -0.09
LINC00458-202ENST00000427299 C2orf72A6NCS6 295 aa14.49□□□□□ -0.09
LINC00458-202ENST00000427299 HS6ST3Q8IZP7 471 aa14.48□□□□□ -0.09
LINC00458-202ENST00000427299 PPP1R37O75864 691 aa14.47□□□□□ -0.09
LINC00458-202ENST00000427299 ARSIQ5FYB1 569 aa14.47□□□□□ -0.09
LINC00458-202ENST00000427299 KHSRPQ92945 711 aaKnown RBP eCLIP14.41□□□□□ -0.1
LINC00458-202ENST00000427299 ZNF687Q8N1G0 1237 aa14.4□□□□□ -0.1
LINC00458-202ENST00000427299 TMC2Q8TDI7 906 aa14.39□□□□□ -0.11
LINC00458-202ENST00000427299 SLC34A2O95436 690 aa14.37□□□□□ -0.11
LINC00458-202ENST00000427299 ZNF316A6NFI3 1004 aaPredicted RBP14.36□□□□□ -0.11
LINC00458-202ENST00000427299 CHGAP10645 457 aaKnown RBP14.35□□□□□ -0.11
LINC00458-202ENST00000427299 DNAJC5Q9H3Z4 198 aa14.33□□□□□ -0.12
LINC00458-202ENST00000427299 PCDHGA4Q9Y5G9 962 aa14.31□□□□□ -0.12
LINC00458-202ENST00000427299 NUDT7P0C024 238 aa14.3□□□□□ -0.12
LINC00458-202ENST00000427299 NKX1-1Q15270 411 aaPredicted RBP14.3□□□□□ -0.12
LINC00458-202ENST00000427299 FOXK1P85037 733 aa14.24□□□□□ -0.13
LINC00458-202ENST00000427299 GPHNQ9NQX3 736 aaPredicted RBP14.24□□□□□ -0.13
LINC00458-202ENST00000427299 LHX6Q9UPM6 363 aa14.24□□□□□ -0.13
LINC00458-202ENST00000427299 RNF166Q96A37 237 aaPredicted RBP14.22□□□□□ -0.13
LINC00458-202ENST00000427299 PTCD2Q8WV60 388 aaKnown RBP14.2□□□□□ -0.14
LINC00458-202ENST00000427299 KDM4FA0A1W2PPD8 638 aa14.19□□□□□ -0.14
LINC00458-202ENST00000427299 PLPP6Q8IY26 295 aa14.19□□□□□ -0.14
LINC00458-202ENST00000427299 DSG2Q14126 1118 aa14.18□□□□□ -0.14
LINC00458-202ENST00000427299 RYDENQ9NUL5 291 aaKnown RBP14.18□□□□□ -0.14
LINC00458-202ENST00000427299 MYT1LQ9UL68 1186 aa14.18□□□□□ -0.14
LINC00458-202ENST00000427299 LSM11P83369 360 aaKnown RBP eCLIP14.17□□□□□ -0.14
LINC00458-202ENST00000427299 PBX2P40425 430 aa14.16□□□□□ -0.14
LINC00458-202ENST00000427299 POTEEQ6S8J3 1075 aa14.15□□□□□ -0.14
LINC00458-202ENST00000427299 ANKRD13DQ6ZTN6 518 aa14.15□□□□□ -0.14
LINC00458-202ENST00000427299 PTGER2P43116 358 aa14.14□□□□□ -0.15
LINC00458-202ENST00000427299 CRISPLD2Q9H0B8 497 aa14.1□□□□□ -0.15
LINC00458-202ENST00000427299 PSDA5PKW4 1024 aaPredicted RBP14.09□□□□□ -0.15
LINC00458-202ENST00000427299 AXIN2Q9Y2T1 843 aa14.09□□□□□ -0.15
LINC00458-202ENST00000427299 GTPBP6O43824 516 aaPredicted RBP14.06□□□□□ -0.16
LINC00458-202ENST00000427299 TBC1D12O60347 775 aa14.04□□□□□ -0.16
LINC00458-202ENST00000427299 OXER1Q8TDS5 423 aa14.03□□□□□ -0.16
LINC00458-202ENST00000427299 NCKAP5LQ9HCH0 1330 aa14.03□□□□□ -0.16
LINC00458-202ENST00000427299 ARHGAP33O14559 1287 aa14.02□□□□□ -0.17
LINC00458-202ENST00000427299 PPP1R15BQ5SWA1 713 aa14.01□□□□□ -0.17
LINC00458-202ENST00000427299 PDE4AP27815 886 aa13.97□□□□□ -0.17
LINC00458-202ENST00000427299 PPP4R3BQ5MIZ7 849 aa13.97□□□□□ -0.17
LINC00458-202ENST00000427299 ADGRD1Q6QNK2 874 aa13.96□□□□□ -0.17
LINC00458-202ENST00000427299 UPF1Q92900 1129 aaKnown RBP eCLIP13.96□□□□□ -0.17
LINC00458-202ENST00000427299 DCAF8L2P0C7V8 631 aa13.95□□□□□ -0.18
LINC00458-202ENST00000427299 PSEN2P49810 448 aa13.94□□□□□ -0.18
LINC00458-202ENST00000427299 DMRTA1Q5VZB9 504 aa13.93□□□□□ -0.18
LINC00458-202ENST00000427299 TK2O00142 265 aa13.91□□□□□ -0.18
LINC00458-202ENST00000427299 LARP6Q9BRS8 491 aaKnown RBP13.89□□□□□ -0.19
LINC00458-202ENST00000427299 HRO43593 1189 aa13.88□□□□□ -0.19
LINC00458-202ENST00000427299 MFSD10Q14728 455 aa13.88□□□□□ -0.19
LINC00458-202ENST00000427299 DDX27Q96GQ7 796 aaKnown RBP13.88□□□□□ -0.19
LINC00458-202ENST00000427299 KCNK17Q96T54 332 aa13.86□□□□□ -0.19
LINC00458-202ENST00000427299 ZNF454Q8N9F8 522 aa13.85□□□□□ -0.19
LINC00458-202ENST00000427299 ANO8Q9HCE9 1232 aaPredicted RBP13.85□□□□□ -0.19
LINC00458-202ENST00000427299 FOSBP53539 338 aa13.83□□□□□ -0.2
LINC00458-202ENST00000427299 CADPS2Q86UW7 1296 aa13.83□□□□□ -0.2
LINC00458-202ENST00000427299 BCL2L12Q9HB09 334 aa13.82□□□□□ -0.2
LINC00458-202ENST00000427299 KCNH8Q96L42 1107 aa13.81□□□□□ -0.2
LINC00458-202ENST00000427299 EVI5O60447 810 aa13.8□□□□□ -0.2
LINC00458-202ENST00000427299 JPH4Q96JJ6 628 aa13.79□□□□□ -0.2
LINC00458-202ENST00000427299 EMILIN3Q9NT22 766 aa13.79□□□□□ -0.2
LINC00458-202ENST00000427299 HCSTQ9UBK5 93 aa13.78□□□□□ -0.2
LINC00458-202ENST00000427299 VPS9D1Q9Y2B5 631 aa13.77□□□□□ -0.21
LINC00458-202ENST00000427299 MAP3K9P80192 1104 aa13.74□□□□□ -0.21
LINC00458-202ENST00000427299 SLC4A5Q9BY07 1137 aa13.74□□□□□ -0.21
LINC00458-202ENST00000427299 PTPREP23469 700 aa13.72□□□□□ -0.21
LINC00458-202ENST00000427299 ZDHHC16Q969W1 377 aa13.72□□□□□ -0.21
LINC00458-202ENST00000427299 ADAM33Q9BZ11 813 aa13.71□□□□□ -0.21
LINC00458-202ENST00000427299 PLA2G2EQ9NZK7 142 aa13.7□□□□□ -0.22
LINC00458-202ENST00000427299 BBXQ8WY36 941 aaPredicted RBP13.69□□□□□ -0.22
LINC00458-202ENST00000427299 KCTD12Q96CX2 325 aaKnown RBP13.69□□□□□ -0.22
LINC00458-202ENST00000427299 ZBED2Q9BTP6 218 aa13.69□□□□□ -0.22
LINC00458-202ENST00000427299 STAC3Q96MF2 364 aa13.68□□□□□ -0.22
LINC00458-202ENST00000427299 CAMK2BQ13554 666 aa13.67□□□□□ -0.22
LINC00458-202ENST00000427299 BHMG1C9JSJ3 638 aaPredicted RBP13.66□□□□□ -0.22
LINC00458-202ENST00000427299 PCDHGA10Q9Y5H3 936 aa13.66□□□□□ -0.22
LINC00458-202ENST00000427299 PHF14O94880 888 aa13.59□□□□□ -0.23
LINC00458-202ENST00000427299 PPP1R3GB7ZBB8 358 aa13.58□□□□□ -0.24
LINC00458-202ENST00000427299 DPYSL4O14531 572 aa13.58□□□□□ -0.24
LINC00458-202ENST00000427299 FBXW7Q969H0 707 aa13.58□□□□□ -0.24
LINC00458-202ENST00000427299 AMER1Q5JTC6 1135 aaPredicted RBP13.57□□□□□ -0.24
LINC00458-202ENST00000427299 TYW1BQ6NUM6 668 aa13.57□□□□□ -0.24
LINC00458-202ENST00000427299 COL9A1P20849 921 aa13.55□□□□□ -0.24
LINC00458-202ENST00000427299 MRPL50Q8N5N7 158 aaKnown RBP13.55□□□□□ -0.24
LINC00458-202ENST00000427299 THSD4Q6ZMP0 1018 aa13.54□□□□□ -0.24
LINC00458-202ENST00000427299 PTPN5P54829 565 aa13.53□□□□□ -0.24
LINC00458-202ENST00000427299 SPRYD3Q8NCJ5 442 aa13.53□□□□□ -0.24
LINC00458-202ENST00000427299 NBPF3Q9H094 633 aa13.53□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms