RNA–Protein interactions for RNA: ENST00000423635.5

CHCHD3-202, Transcript of coiled-coil-helix-coiled-coil-helix domain containing 3, humanhuman

TSL 1 (best)

Gene CHCHD3, Length 1,310 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHCHD3-202ENST00000423635 SCAPERQ9BY12 1400 aa28.14■■■□□ 2.09
CHCHD3-202ENST00000423635 ATP10AO60312 1499 aa28.08■■■□□ 2.09
CHCHD3-202ENST00000423635 CDK13Q14004 1512 aaKnown RBP28.07■■■□□ 2.08
CHCHD3-202ENST00000423635 FER1L4A9Z1Z3 1794 aa28.06■■■□□ 2.08
CHCHD3-202ENST00000423635 ARHGEF12Q9NZN5 1544 aa28.05■■■□□ 2.08
CHCHD3-202ENST00000423635 EFCAB2Q5VUJ9 269 aa28.05■■■□□ 2.08
CHCHD3-202ENST00000423635 C9orf84Q5VXU9 1444 aa28.03■■■□□ 2.08
CHCHD3-202ENST00000423635 CEBPAP49715 358 aaPredicted RBP27.98■■■□□ 2.07
CHCHD3-202ENST00000423635 CDK11AQ9UQ88 783 aaPredicted RBP27.97■■■□□ 2.07
CHCHD3-202ENST00000423635 DMRT2Q9Y5R5 561 aa27.97■■■□□ 2.07
CHCHD3-202ENST00000423635 PREX1Q8TCU6 1659 aa27.95■■■□□ 2.07
CHCHD3-202ENST00000423635 FMN1Q68DA7 1419 aa27.95■■■□□ 2.06
CHCHD3-202ENST00000423635 AFAP1Q8N556 730 aa27.92■■■□□ 2.06
CHCHD3-202ENST00000423635 ATP1B4Q9UN42 357 aaPredicted RBP27.92■■■□□ 2.06
CHCHD3-202ENST00000423635 MYO5CQ9NQX4 1742 aa27.92■■■□□ 2.06
CHCHD3-202ENST00000423635 ZNF518AQ6AHZ1 1483 aa27.92■■■□□ 2.06
CHCHD3-202ENST00000423635 SETD1BQ9UPS6 1966 aaKnown RBP27.89■■■□□ 2.06
CHCHD3-202ENST00000423635 KDM5CP41229 1560 aa27.87■■■□□ 2.05
CHCHD3-202ENST00000423635 STRCQ7RTU9 1775 aa27.87■■■□□ 2.05
CHCHD3-202ENST00000423635 TROQ12816 1431 aaPredicted RBP27.86■■■□□ 2.05
CHCHD3-202ENST00000423635 UHRF1BP1Q6BDS2 1440 aa27.86■■■□□ 2.05
CHCHD3-202ENST00000423635 UBTFP17480 764 aaKnown RBP27.85■■■□□ 2.05
CHCHD3-202ENST00000423635 KIF14Q15058 1648 aa27.84■■■□□ 2.05
CHCHD3-202ENST00000423635 ARHGAP35Q9NRY4 1499 aa27.84■■■□□ 2.05
CHCHD3-202ENST00000423635 ARHGAP5Q13017 1502 aa27.83■■■□□ 2.05
CHCHD3-202ENST00000423635 REREQ9P2R6 1566 aa27.82■■■□□ 2.04
CHCHD3-202ENST00000423635 MLH3Q9UHC1 1453 aa27.81■■■□□ 2.04
CHCHD3-202ENST00000423635 CLIP1P30622 1438 aa27.8■■■□□ 2.04
CHCHD3-202ENST00000423635 MYT1LQ9UL68 1186 aa27.8■■■□□ 2.04
CHCHD3-202ENST00000423635 DIP2CQ9Y2E4 1556 aa27.79■■■□□ 2.04
CHCHD3-202ENST00000423635 PTPRTO14522 1441 aa27.79■■■□□ 2.04
CHCHD3-202ENST00000423635 ILDR2Q71H61 639 aa27.77■■■□□ 2.04
CHCHD3-202ENST00000423635 DISP3Q9P2K9 1392 aa27.77■■■□□ 2.04
CHCHD3-202ENST00000423635 AGLP35573 1532 aa27.76■■■□□ 2.03
CHCHD3-202ENST00000423635 EHMT2Q96KQ7 1210 aa27.74■■■□□ 2.03
CHCHD3-202ENST00000423635 TRAPPC8Q9Y2L5 1435 aa27.73■■■□□ 2.03
CHCHD3-202ENST00000423635 CDC42BPBQ9Y5S2 1711 aa27.72■■■□□ 2.03
CHCHD3-202ENST00000423635 SOCS7O14512 581 aa27.71■■■□□ 2.03
CHCHD3-202ENST00000423635 ESF1Q9H501 851 aaKnown RBP27.71■■■□□ 2.03
CHCHD3-202ENST00000423635 C3P01024 1663 aa27.71■■■□□ 2.03
CHCHD3-202ENST00000423635 ABCA6Q8N139 1617 aa27.71■■■□□ 2.03
CHCHD3-202ENST00000423635 LRRIQ1Q96JM4 1722 aa27.67■■■□□ 2.02
CHCHD3-202ENST00000423635 CNTLNQ9NXG0 1405 aa27.65■■■□□ 2.02
CHCHD3-202ENST00000423635 ABCC1P33527 1531 aa27.65■■■□□ 2.02
CHCHD3-202ENST00000423635 LTBP4Q8N2S1 1624 aa27.65■■■□□ 2.02
CHCHD3-202ENST00000423635 PREX2Q70Z35 1606 aa27.63■■■□□ 2.01
CHCHD3-202ENST00000423635 IQSEC2Q5JU85 1478 aa27.62■■■□□ 2.01
CHCHD3-202ENST00000423635 NCOA1Q15788 1441 aa27.62■■■□□ 2.01
CHCHD3-202ENST00000423635 KIDINS220Q9ULH0 1771 aa27.61■■■□□ 2.01
CHCHD3-202ENST00000423635 ITSN2Q9NZM3 1697 aa27.6■■■□□ 2.01
CHCHD3-202ENST00000423635 CASKIN1Q8WXD9 1431 aa27.59■■■□□ 2.01
CHCHD3-202ENST00000423635 CCDC18Q5T9S5 1454 aa27.58■■■□□ 2.01
CHCHD3-202ENST00000423635 NPATQ14207 1427 aa27.57■■■□□ 2
CHCHD3-202ENST00000423635 ZMYM3Q14202 1370 aa27.54■■■□□ 2
CHCHD3-202ENST00000423635 SPATA31D1Q6ZQQ2 1576 aa27.51■■□□□ 1.99
CHCHD3-202ENST00000423635 CDC42BPAQ5VT25 1732 aa27.51■■□□□ 1.99
CHCHD3-202ENST00000423635 SAMD9LQ8IVG5 1584 aa27.51■■□□□ 1.99
CHCHD3-202ENST00000423635 MROH2AA6NES4 1674 aa27.5■■□□□ 1.99
CHCHD3-202ENST00000423635 CAMSAP1Q5T5Y3 1602 aa27.5■■□□□ 1.99
CHCHD3-202ENST00000423635 SPAG9O60271 1321 aaKnown RBP27.48■■□□□ 1.99
CHCHD3-202ENST00000423635 ZNF777Q9ULD5 760 aaPredicted RBP27.48■■□□□ 1.99
CHCHD3-202ENST00000423635 NCKAP5LQ9HCH0 1330 aa27.46■■□□□ 1.99
CHCHD3-202ENST00000423635 CHIC1Q5VXU3 224 aa27.46■■□□□ 1.99
CHCHD3-202ENST00000423635 HNRNPMP52272 730 aaKnown RBP eCLIP27.45■■□□□ 1.992e-6■■■■□ 23.8
CHCHD3-202ENST00000423635 GPATCH8Q9UKJ3 1502 aaKnown RBP27.45■■□□□ 1.98
CHCHD3-202ENST00000423635 PKD2Q13563 968 aa27.43■■□□□ 1.98
CHCHD3-202ENST00000423635 KIAA1107Q9UPP5 1409 aa27.43■■□□□ 1.98
CHCHD3-202ENST00000423635 ZNF335Q9H4Z2 1342 aaPredicted RBP27.42■■□□□ 1.98
CHCHD3-202ENST00000423635 SYCP2Q9BX26 1530 aa27.41■■□□□ 1.98
CHCHD3-202ENST00000423635 FYCO1Q9BQS8 1478 aa27.41■■□□□ 1.98
CHCHD3-202ENST00000423635 PLA2R1Q13018 1463 aa27.4■■□□□ 1.98
CHCHD3-202ENST00000423635 PPP6R1Q9UPN7 881 aa27.39■■□□□ 1.97
CHCHD3-202ENST00000423635 SUPT6HQ7KZ85 1726 aaKnown RBP27.38■■□□□ 1.97
CHCHD3-202ENST00000423635 PTPRKQ15262 1439 aa27.38■■□□□ 1.97
CHCHD3-202ENST00000423635 UBAP1LF5GYI3 381 aa27.38■■□□□ 1.97
CHCHD3-202ENST00000423635 A2MP01023 1474 aa27.37■■□□□ 1.97
CHCHD3-202ENST00000423635 PLXNC1O60486 1568 aa27.37■■□□□ 1.97
CHCHD3-202ENST00000423635 ATP7AQ04656 1500 aa27.37■■□□□ 1.97
CHCHD3-202ENST00000423635 CFDP1Q9UEE9 299 aaPredicted RBP27.37■■□□□ 1.97
CHCHD3-202ENST00000423635 TCOF1Q13428 1488 aaKnown RBP27.37■■□□□ 1.97
CHCHD3-202ENST00000423635 PLEKHH2Q8IVE3 1493 aa27.37■■□□□ 1.97
CHCHD3-202ENST00000423635 GGT6Q6P531 493 aa27.35■■□□□ 1.97
CHCHD3-202ENST00000423635 ZNF142P52746 1687 aaPredicted RBP27.34■■□□□ 1.97
CHCHD3-202ENST00000423635 CLTCQ00610 1675 aaKnown RBP27.34■■□□□ 1.97
CHCHD3-202ENST00000423635 INO80Q9ULG1 1556 aaPredicted RBP27.33■■□□□ 1.97
CHCHD3-202ENST00000423635 MYO3AQ8NEV4 1616 aa27.32■■□□□ 1.96
CHCHD3-202ENST00000423635 CEP170BQ9Y4F5 1589 aaPredicted RBP27.32■■□□□ 1.96
CHCHD3-202ENST00000423635 CCNB3Q8WWL7 1395 aa27.29■■□□□ 1.96
CHCHD3-202ENST00000423635 A2ML1A8K2U0 1454 aa27.22■■□□□ 1.95
CHCHD3-202ENST00000423635 ADGBQ8N7X0 1667 aa27.21■■□□□ 1.95
CHCHD3-202ENST00000423635 ZNF644Q9H582 1327 aaPredicted RBP27.2■■□□□ 1.95
CHCHD3-202ENST00000423635 MBD5Q9P267 1494 aa27.2■■□□□ 1.94
CHCHD3-202ENST00000423635 RTEL1-TNFRSF6BF6WH68 1400 aa27.2■■□□□ 1.94
CHCHD3-202ENST00000423635 MTUS2Q5JR59 1369 aa27.2■■□□□ 1.94
CHCHD3-202ENST00000423635 DNMT1P26358 1616 aaKnown RBP27.19■■□□□ 1.94
CHCHD3-202ENST00000423635 DHX29Q7Z478 1369 aaKnown RBP27.18■■□□□ 1.94
CHCHD3-202ENST00000423635 TOM1O60784 492 aa27.14■■□□□ 1.93
CHCHD3-202ENST00000423635 HSPA1LP34931 641 aa27.13■■□□□ 1.93
CHCHD3-202ENST00000423635 FBXO31Q5XUX0 539 aaPredicted RBP27.13■■□□□ 1.93
CHCHD3-202ENST00000423635 CPS1P31327 1500 aa27.12■■□□□ 1.93
Retrieved 100 of 20,778 RNA–protein pairs in 69.9 ms