RNA–Protein interactions for RNA: ENST00000417448.1

VCP-202, Transcript of valosin containing protein, humanhuman

TSL 3

Gene VCP, Length 722 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCP-202ENST00000417448 RANGAP1P46060 587 aaPredicted RBP30.19■■■□□ 2.42
VCP-202ENST00000417448 STRCQ7RTU9 1775 aa30.18■■■□□ 2.42
VCP-202ENST00000417448 CSRNP3Q8WYN3 585 aa30.18■■■□□ 2.42
VCP-202ENST00000417448 DISP3Q9P2K9 1392 aa30.16■■■□□ 2.42
VCP-202ENST00000417448 SCAPERQ9BY12 1400 aa30.13■■■□□ 2.41
VCP-202ENST00000417448 CDK13Q14004 1512 aaKnown RBP30.13■■■□□ 2.41
VCP-202ENST00000417448 ATP10AO60312 1499 aa30.11■■■□□ 2.41
VCP-202ENST00000417448 PLCH2O75038 1416 aa30.1■■■□□ 2.41
VCP-202ENST00000417448 SOCS7O14512 581 aa30.09■■■□□ 2.41
VCP-202ENST00000417448 CEBPAP49715 358 aaPredicted RBP30.09■■■□□ 2.41
VCP-202ENST00000417448 C9orf84Q5VXU9 1444 aa30.09■■■□□ 2.41
VCP-202ENST00000417448 MYO5CQ9NQX4 1742 aa30.04■■■□□ 2.4
VCP-202ENST00000417448 CHIC1Q5VXU3 224 aa30.01■■■□□ 2.39
VCP-202ENST00000417448 SPATA31D1Q6ZQQ2 1576 aa30.01■■■□□ 2.39
VCP-202ENST00000417448 SETD1BQ9UPS6 1966 aaKnown RBP29.99■■■□□ 2.39
VCP-202ENST00000417448 UHRF1BP1Q6BDS2 1440 aa29.97■■■□□ 2.39
VCP-202ENST00000417448 DMRT2Q9Y5R5 561 aa29.96■■■□□ 2.39
VCP-202ENST00000417448 KDM5CP41229 1560 aa29.95■■■□□ 2.39
VCP-202ENST00000417448 KIF14Q15058 1648 aa29.95■■■□□ 2.38
VCP-202ENST00000417448 C3P01024 1663 aa29.94■■■□□ 2.38
VCP-202ENST00000417448 DIP2CQ9Y2E4 1556 aa29.92■■■□□ 2.38
VCP-202ENST00000417448 ZNF518AQ6AHZ1 1483 aa29.92■■■□□ 2.38
VCP-202ENST00000417448 EEA1Q15075 1411 aa29.9■■■□□ 2.38
VCP-202ENST00000417448 LTBP4Q8N2S1 1624 aa29.9■■■□□ 2.38
VCP-202ENST00000417448 EFCAB2Q5VUJ9 269 aa29.9■■■□□ 2.38
VCP-202ENST00000417448 PTPRTO14522 1441 aa29.89■■■□□ 2.38
VCP-202ENST00000417448 REREQ9P2R6 1566 aa29.87■■■□□ 2.37
VCP-202ENST00000417448 ABCA6Q8N139 1617 aa29.87■■■□□ 2.37
VCP-202ENST00000417448 AFAP1Q8N556 730 aa29.87■■■□□ 2.37
VCP-202ENST00000417448 ARHGAP5Q13017 1502 aa29.84■■■□□ 2.37
VCP-202ENST00000417448 CDC42BPBQ9Y5S2 1711 aa29.79■■■□□ 2.36
VCP-202ENST00000417448 LRRIQ1Q96JM4 1722 aa29.79■■■□□ 2.36
VCP-202ENST00000417448 IQSEC2Q5JU85 1478 aa29.76■■■□□ 2.35
VCP-202ENST00000417448 ATP1B4Q9UN42 357 aaPredicted RBP29.76■■■□□ 2.35
VCP-202ENST00000417448 AGLP35573 1532 aa29.76■■■□□ 2.35
VCP-202ENST00000417448 MLH3Q9UHC1 1453 aa29.75■■■□□ 2.35
VCP-202ENST00000417448 TROQ12816 1431 aaPredicted RBP29.75■■■□□ 2.35
VCP-202ENST00000417448 NCOA1Q15788 1441 aa29.75■■■□□ 2.35
VCP-202ENST00000417448 FMN1Q68DA7 1419 aa29.74■■■□□ 2.35
VCP-202ENST00000417448 TRAPPC8Q9Y2L5 1435 aa29.73■■■□□ 2.35
VCP-202ENST00000417448 MYT1LQ9UL68 1186 aa29.73■■■□□ 2.35
VCP-202ENST00000417448 ARHGAP35Q9NRY4 1499 aa29.72■■■□□ 2.35
VCP-202ENST00000417448 ITSN2Q9NZM3 1697 aa29.7■■■□□ 2.35
VCP-202ENST00000417448 CDK11AQ9UQ88 783 aaPredicted RBP29.7■■■□□ 2.35
VCP-202ENST00000417448 ABCC1P33527 1531 aa29.7■■■□□ 2.34
VCP-202ENST00000417448 KIDINS220Q9ULH0 1771 aa29.69■■■□□ 2.34
VCP-202ENST00000417448 PREX2Q70Z35 1606 aa29.68■■■□□ 2.34
VCP-202ENST00000417448 CAMSAP1Q5T5Y3 1602 aa29.67■■■□□ 2.34
VCP-202ENST00000417448 CLIP1P30622 1438 aa29.65■■■□□ 2.34
VCP-202ENST00000417448 ESF1Q9H501 851 aaKnown RBP29.63■■■□□ 2.33
VCP-202ENST00000417448 MROH2AA6NES4 1674 aa29.62■■■□□ 2.33
VCP-202ENST00000417448 CNTLNQ9NXG0 1405 aa29.62■■■□□ 2.33
VCP-202ENST00000417448 EHMT2Q96KQ7 1210 aa29.58■■■□□ 2.33
VCP-202ENST00000417448 CDC42BPAQ5VT25 1732 aa29.57■■■□□ 2.32
VCP-202ENST00000417448 NPATQ14207 1427 aa29.56■■■□□ 2.32
VCP-202ENST00000417448 ZNF335Q9H4Z2 1342 aaPredicted RBP29.55■■■□□ 2.32
VCP-202ENST00000417448 NCKAP5LQ9HCH0 1330 aa29.53■■■□□ 2.32
VCP-202ENST00000417448 ZNF142P52746 1687 aaPredicted RBP29.53■■■□□ 2.32
VCP-202ENST00000417448 UBTFP17480 764 aaKnown RBP29.52■■■□□ 2.32
VCP-202ENST00000417448 MYO3AQ8NEV4 1616 aa29.52■■■□□ 2.32
VCP-202ENST00000417448 SAMD9LQ8IVG5 1584 aa29.52■■■□□ 2.32
VCP-202ENST00000417448 SUPT6HQ7KZ85 1726 aaKnown RBP29.51■■■□□ 2.31
VCP-202ENST00000417448 ZMYM3Q14202 1370 aa29.5■■■□□ 2.31
VCP-202ENST00000417448 CLTCQ00610 1675 aaKnown RBP29.5■■■□□ 2.31
VCP-202ENST00000417448 UBAP1LF5GYI3 381 aa29.49■■■□□ 2.31
VCP-202ENST00000417448 CEP170BQ9Y4F5 1589 aaPredicted RBP29.45■■■□□ 2.31
VCP-202ENST00000417448 PLA2R1Q13018 1463 aa29.45■■■□□ 2.31
VCP-202ENST00000417448 TCOF1Q13428 1488 aaKnown RBP29.44■■■□□ 2.3
VCP-202ENST00000417448 SYCP2Q9BX26 1530 aa29.43■■■□□ 2.3
VCP-202ENST00000417448 PLXNC1O60486 1568 aa29.42■■■□□ 2.3
VCP-202ENST00000417448 CCDC18Q5T9S5 1454 aa29.41■■■□□ 2.3
VCP-202ENST00000417448 PTPRKQ15262 1439 aa29.39■■■□□ 2.3
VCP-202ENST00000417448 CASKIN1Q8WXD9 1431 aa29.38■■■□□ 2.29
VCP-202ENST00000417448 ATP7AQ04656 1500 aa29.37■■■□□ 2.29
VCP-202ENST00000417448 PKD2Q13563 968 aa29.37■■■□□ 2.29
VCP-202ENST00000417448 INO80Q9ULG1 1556 aaPredicted RBP29.37■■■□□ 2.29
VCP-202ENST00000417448 MED1Q15648 1581 aaPredicted RBP29.35■■■□□ 2.29
VCP-202ENST00000417448 SPAG9O60271 1321 aaKnown RBP29.34■■■□□ 2.29
VCP-202ENST00000417448 ZNF777Q9ULD5 760 aaPredicted RBP29.33■■■□□ 2.29
VCP-202ENST00000417448 GPATCH8Q9UKJ3 1502 aaKnown RBP29.32■■■□□ 2.28
VCP-202ENST00000417448 A2MP01023 1474 aa29.31■■■□□ 2.28
VCP-202ENST00000417448 HNRNPMP52272 730 aaKnown RBP eCLIP29.3■■■□□ 2.282e-6■■□□□ 13.4
VCP-202ENST00000417448 PPP6R1Q9UPN7 881 aa29.29■■■□□ 2.28
VCP-202ENST00000417448 DNMT1P26358 1616 aaKnown RBP29.28■■■□□ 2.28
VCP-202ENST00000417448 HSPA1LP34931 641 aa29.28■■■□□ 2.28
VCP-202ENST00000417448 POLR1AO95602 1720 aaPredicted RBP29.26■■■□□ 2.27
VCP-202ENST00000417448 A2ML1A8K2U0 1454 aa29.24■■■□□ 2.27
VCP-202ENST00000417448 NEURL4Q96JN8 1562 aa29.24■■■□□ 2.27
VCP-202ENST00000417448 GGT6Q6P531 493 aa29.23■■■□□ 2.27
VCP-202ENST00000417448 FYCO1Q9BQS8 1478 aa29.23■■■□□ 2.27
VCP-202ENST00000417448 ADGBQ8N7X0 1667 aa29.22■■■□□ 2.27
VCP-202ENST00000417448 KIAA1107Q9UPP5 1409 aa29.22■■■□□ 2.27
VCP-202ENST00000417448 SCAF1Q9H7N4 1312 aaKnown RBP29.2■■■□□ 2.27
VCP-202ENST00000417448 PIP4K2BP78356 416 aa29.2■■■□□ 2.26
VCP-202ENST00000417448 CPS1P31327 1500 aa29.19■■■□□ 2.26
VCP-202ENST00000417448 PLEKHH2Q8IVE3 1493 aa29.17■■■□□ 2.26
VCP-202ENST00000417448 ALKQ9UM73 1620 aa29.16■■■□□ 2.26
VCP-202ENST00000417448 SHANK2Q9UPX8 1470 aa29.15■■■□□ 2.26
VCP-202ENST00000417448 CFDP1Q9UEE9 299 aaPredicted RBP29.13■■■□□ 2.25
VCP-202ENST00000417448 TOM1O60784 492 aa29.12■■■□□ 2.25
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms