RNA–Protein interactions for RNA: ENST00000409225.2

CHMP3-203, Transcript of charged multivesicular body protein 3, humanhuman

TSL 2 BASIC

Gene CHMP3, Length 1,099 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-203ENST00000409225 CDK13Q14004 1512 aaKnown RBP28.09■■■□□ 2.09
CHMP3-203ENST00000409225 EEA1Q15075 1411 aa28.06■■■□□ 2.08
CHMP3-203ENST00000409225 PLCH2O75038 1416 aa28.05■■■□□ 2.08
CHMP3-203ENST00000409225 ARHGEF12Q9NZN5 1544 aa28.02■■■□□ 2.08
CHMP3-203ENST00000409225 ATP10AO60312 1499 aa28.02■■■□□ 2.08
CHMP3-203ENST00000409225 C9orf84Q5VXU9 1444 aa28.01■■■□□ 2.07
CHMP3-203ENST00000409225 CEBPAP49715 358 aaPredicted RBP28■■■□□ 2.07
CHMP3-203ENST00000409225 PREX1Q8TCU6 1659 aa27.99■■■□□ 2.07
CHMP3-203ENST00000409225 ATP1B4Q9UN42 357 aaPredicted RBP27.97■■■□□ 2.07
CHMP3-203ENST00000409225 EFCAB2Q5VUJ9 269 aa27.95■■■□□ 2.06
CHMP3-203ENST00000409225 MYO5CQ9NQX4 1742 aa27.92■■■□□ 2.06
CHMP3-203ENST00000409225 DISP3Q9P2K9 1392 aa27.91■■■□□ 2.06
CHMP3-203ENST00000409225 DMRT2Q9Y5R5 561 aa27.89■■■□□ 2.06
CHMP3-203ENST00000409225 STRCQ7RTU9 1775 aa27.88■■■□□ 2.05
CHMP3-203ENST00000409225 UHRF1BP1Q6BDS2 1440 aa27.87■■■□□ 2.05
CHMP3-203ENST00000409225 MYT1LQ9UL68 1186 aa27.87■■■□□ 2.05
CHMP3-203ENST00000409225 ZNF518AQ6AHZ1 1483 aa27.87■■■□□ 2.05
CHMP3-203ENST00000409225 KIF14Q15058 1648 aa27.86■■■□□ 2.05
CHMP3-203ENST00000409225 ILDR2Q71H61 639 aa27.86■■■□□ 2.05
CHMP3-203ENST00000409225 AFAP1Q8N556 730 aa27.86■■■□□ 2.05
CHMP3-203ENST00000409225 EHMT2Q96KQ7 1210 aa27.85■■■□□ 2.05
CHMP3-203ENST00000409225 CDK11AQ9UQ88 783 aaPredicted RBP27.85■■■□□ 2.05
CHMP3-203ENST00000409225 FMN1Q68DA7 1419 aa27.84■■■□□ 2.05
CHMP3-203ENST00000409225 ARHGAP5Q13017 1502 aa27.83■■■□□ 2.05
CHMP3-203ENST00000409225 KDM5CP41229 1560 aa27.82■■■□□ 2.04
CHMP3-203ENST00000409225 DIP2CQ9Y2E4 1556 aa27.8■■■□□ 2.04
CHMP3-203ENST00000409225 TROQ12816 1431 aaPredicted RBP27.78■■■□□ 2.04
CHMP3-203ENST00000409225 UBTFP17480 764 aaKnown RBP27.78■■■□□ 2.04
CHMP3-203ENST00000409225 SETD1BQ9UPS6 1966 aaKnown RBP27.77■■■□□ 2.04
CHMP3-203ENST00000409225 SOCS7O14512 581 aa27.76■■■□□ 2.03
CHMP3-203ENST00000409225 ARHGAP35Q9NRY4 1499 aa27.76■■■□□ 2.03
CHMP3-203ENST00000409225 CLIP1P30622 1438 aa27.75■■■□□ 2.03
CHMP3-203ENST00000409225 PTPRTO14522 1441 aa27.74■■■□□ 2.03
CHMP3-203ENST00000409225 ABCA6Q8N139 1617 aa27.74■■■□□ 2.03
CHMP3-203ENST00000409225 C3P01024 1663 aa27.73■■■□□ 2.03
CHMP3-203ENST00000409225 REREQ9P2R6 1566 aa27.73■■■□□ 2.03
CHMP3-203ENST00000409225 ESF1Q9H501 851 aaKnown RBP27.72■■■□□ 2.03
CHMP3-203ENST00000409225 MLH3Q9UHC1 1453 aa27.7■■■□□ 2.02
CHMP3-203ENST00000409225 CDC42BPBQ9Y5S2 1711 aa27.68■■■□□ 2.02
CHMP3-203ENST00000409225 SPATA31D1Q6ZQQ2 1576 aa27.68■■■□□ 2.02
CHMP3-203ENST00000409225 TRAPPC8Q9Y2L5 1435 aa27.67■■■□□ 2.02
CHMP3-203ENST00000409225 LRRIQ1Q96JM4 1722 aa27.66■■■□□ 2.02
CHMP3-203ENST00000409225 AGLP35573 1532 aa27.66■■■□□ 2.02
CHMP3-203ENST00000409225 LTBP4Q8N2S1 1624 aa27.64■■■□□ 2.02
CHMP3-203ENST00000409225 ABCC1P33527 1531 aa27.63■■■□□ 2.01
CHMP3-203ENST00000409225 PREX2Q70Z35 1606 aa27.62■■■□□ 2.01
CHMP3-203ENST00000409225 ITSN2Q9NZM3 1697 aa27.61■■■□□ 2.01
CHMP3-203ENST00000409225 NCOA1Q15788 1441 aa27.6■■■□□ 2.01
CHMP3-203ENST00000409225 CNTLNQ9NXG0 1405 aa27.58■■■□□ 2.01
CHMP3-203ENST00000409225 KIDINS220Q9ULH0 1771 aa27.57■■■□□ 2
CHMP3-203ENST00000409225 IQSEC2Q5JU85 1478 aa27.56■■■□□ 2
CHMP3-203ENST00000409225 CAMSAP1Q5T5Y3 1602 aa27.53■■■□□ 2
CHMP3-203ENST00000409225 CCDC18Q5T9S5 1454 aa27.51■■□□□ 1.99
CHMP3-203ENST00000409225 ZNF777Q9ULD5 760 aaPredicted RBP27.49■■□□□ 1.99
CHMP3-203ENST00000409225 CDC42BPAQ5VT25 1732 aa27.49■■□□□ 1.99
CHMP3-203ENST00000409225 NPATQ14207 1427 aa27.49■■□□□ 1.99
CHMP3-203ENST00000409225 SAMD9LQ8IVG5 1584 aa27.48■■□□□ 1.99
CHMP3-203ENST00000409225 NCKAP5LQ9HCH0 1330 aa27.48■■□□□ 1.99
CHMP3-203ENST00000409225 CASKIN1Q8WXD9 1431 aa27.48■■□□□ 1.99
CHMP3-203ENST00000409225 MROH2AA6NES4 1674 aa27.47■■□□□ 1.99
CHMP3-203ENST00000409225 ZMYM3Q14202 1370 aa27.47■■□□□ 1.99
CHMP3-203ENST00000409225 ZNF335Q9H4Z2 1342 aaPredicted RBP27.44■■□□□ 1.98
CHMP3-203ENST00000409225 SPAG9O60271 1321 aaKnown RBP27.43■■□□□ 1.98
CHMP3-203ENST00000409225 SUPT6HQ7KZ85 1726 aaKnown RBP27.43■■□□□ 1.98
CHMP3-203ENST00000409225 SYCP2Q9BX26 1530 aa27.42■■□□□ 1.98
CHMP3-203ENST00000409225 UBAP1LF5GYI3 381 aa27.42■■□□□ 1.98
CHMP3-203ENST00000409225 HNRNPMP52272 730 aaKnown RBP eCLIP27.4■■□□□ 1.98
CHMP3-203ENST00000409225 CLTCQ00610 1675 aaKnown RBP27.39■■□□□ 1.97
CHMP3-203ENST00000409225 MYO3AQ8NEV4 1616 aa27.37■■□□□ 1.97
CHMP3-203ENST00000409225 ATP7AQ04656 1500 aa27.36■■□□□ 1.97
CHMP3-203ENST00000409225 GPATCH8Q9UKJ3 1502 aaKnown RBP27.36■■□□□ 1.97
CHMP3-203ENST00000409225 PKD2Q13563 968 aa27.35■■□□□ 1.97
CHMP3-203ENST00000409225 ZNF142P52746 1687 aaPredicted RBP27.35■■□□□ 1.97
CHMP3-203ENST00000409225 PLA2R1Q13018 1463 aa27.34■■□□□ 1.97
CHMP3-203ENST00000409225 CEP170BQ9Y4F5 1589 aaPredicted RBP27.34■■□□□ 1.97
CHMP3-203ENST00000409225 FYCO1Q9BQS8 1478 aa27.33■■□□□ 1.97
CHMP3-203ENST00000409225 PTPRKQ15262 1439 aa27.33■■□□□ 1.96
CHMP3-203ENST00000409225 A2MP01023 1474 aa27.32■■□□□ 1.96
CHMP3-203ENST00000409225 PLXNC1O60486 1568 aa27.32■■□□□ 1.96
CHMP3-203ENST00000409225 GGT6Q6P531 493 aa27.32■■□□□ 1.96
CHMP3-203ENST00000409225 TCOF1Q13428 1488 aaKnown RBP27.31■■□□□ 1.96
CHMP3-203ENST00000409225 INO80Q9ULG1 1556 aaPredicted RBP27.31■■□□□ 1.96
CHMP3-203ENST00000409225 CHIC1Q5VXU3 224 aa27.29■■□□□ 1.96
CHMP3-203ENST00000409225 CFDP1Q9UEE9 299 aaPredicted RBP27.28■■□□□ 1.96
CHMP3-203ENST00000409225 PPP6R1Q9UPN7 881 aa27.28■■□□□ 1.96
CHMP3-203ENST00000409225 PLEKHH2Q8IVE3 1493 aa27.27■■□□□ 1.96
CHMP3-203ENST00000409225 KIAA1107Q9UPP5 1409 aa27.27■■□□□ 1.96
CHMP3-203ENST00000409225 CCNB3Q8WWL7 1395 aa27.24■■□□□ 1.95
CHMP3-203ENST00000409225 SCAF1Q9H7N4 1312 aaKnown RBP27.21■■□□□ 1.95
CHMP3-203ENST00000409225 A2ML1A8K2U0 1454 aa27.19■■□□□ 1.94
CHMP3-203ENST00000409225 ADGBQ8N7X0 1667 aa27.18■■□□□ 1.94
CHMP3-203ENST00000409225 PIP4K2BP78356 416 aa27.18■■□□□ 1.94
CHMP3-203ENST00000409225 DNMT1P26358 1616 aaKnown RBP27.17■■□□□ 1.94
CHMP3-203ENST00000409225 HSPA1LP34931 641 aa27.16■■□□□ 1.94
CHMP3-203ENST00000409225 ZNF644Q9H582 1327 aaPredicted RBP27.15■■□□□ 1.94
CHMP3-203ENST00000409225 MTUS2Q5JR59 1369 aa27.14■■□□□ 1.94
CHMP3-203ENST00000409225 MED1Q15648 1581 aaPredicted RBP27.11■■□□□ 1.93
CHMP3-203ENST00000409225 TOM1O60784 492 aa27.1■■□□□ 1.93
CHMP3-203ENST00000409225 FBXO31Q5XUX0 539 aaPredicted RBP27.1■■□□□ 1.93
CHMP3-203ENST00000409225 POLR1AO95602 1720 aaPredicted RBP27.1■■□□□ 1.93
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms