RNA–Protein interactions for RNA: ENST00000399804.5

SCAF4-202, Transcript of SR-related CTD associated factor 4, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SCAF4, Length 4,127 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF4-202ENST00000399804 GGT6Q6P531 493 aa19.05■□□□□ 0.64
SCAF4-202ENST00000399804 IQGAP2Q13576 1575 aa19.04■□□□□ 0.64
SCAF4-202ENST00000399804 KIF3BO15066 747 aa19.02■□□□□ 0.64
SCAF4-202ENST00000399804 GRIN2AQ12879 1464 aa19.02■□□□□ 0.64
SCAF4-202ENST00000399804 UACAQ9BZF9 1416 aa19■□□□□ 0.63
SCAF4-202ENST00000399804 KANK1Q14678 1352 aa19■□□□□ 0.63
SCAF4-202ENST00000399804 EPRSP07814 1512 aaKnown RBP19■□□□□ 0.63
SCAF4-202ENST00000399804 SYNJ2O15056 1496 aa19■□□□□ 0.63
SCAF4-202ENST00000399804 CDK13Q14004 1512 aaKnown RBP19■□□□□ 0.63
SCAF4-202ENST00000399804 SENP3-EIF4A1A0A087X0R7 540 aa18.98■□□□□ 0.63
SCAF4-202ENST00000399804 EHBP1L1Q8N3D4 1523 aa18.98■□□□□ 0.63
SCAF4-202ENST00000399804 TROQ12816 1431 aaPredicted RBP18.97■□□□□ 0.63
SCAF4-202ENST00000399804 MAP3K1Q13233 1512 aa18.97■□□□□ 0.63
SCAF4-202ENST00000399804 MAGI1Q96QZ7 1491 aaPredicted RBP18.96■□□□□ 0.63
SCAF4-202ENST00000399804 CYB5RLQ6IPT4 315 aa18.96■□□□□ 0.63
SCAF4-202ENST00000399804 ARID4BQ4LE39 1312 aaPredicted RBP18.94■□□□□ 0.62
SCAF4-202ENST00000399804 MIA2Q96PC5 1412 aa18.94■□□□□ 0.62
SCAF4-202ENST00000399804 HECW1Q76N89 1606 aa18.94■□□□□ 0.62
SCAF4-202ENST00000399804 PLB1Q6P1J6 1458 aa18.93■□□□□ 0.62
SCAF4-202ENST00000399804 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP18.92■□□□□ 0.625e-6■■■■■ 46.2
SCAF4-202ENST00000399804 KIF15Q9NS87 1388 aa18.92■□□□□ 0.62
SCAF4-202ENST00000399804 HFM1A2PYH4 1435 aa18.91■□□□□ 0.62
SCAF4-202ENST00000399804 MLECQ14165 292 aa18.9■□□□□ 0.62
SCAF4-202ENST00000399804 CDCA8Q53HL2 280 aa18.9■□□□□ 0.62
SCAF4-202ENST00000399804 ANKRD50Q9ULJ7 1429 aa18.9■□□□□ 0.62
SCAF4-202ENST00000399804 KIF21AQ7Z4S6 1674 aa18.89■□□□□ 0.61
SCAF4-202ENST00000399804 CCER2I3L3R5 266 aa18.89■□□□□ 0.61
SCAF4-202ENST00000399804 KNSTRNQ9Y448 316 aa18.89■□□□□ 0.61
SCAF4-202ENST00000399804 IRX6P78412 446 aaPredicted RBP18.88■□□□□ 0.61
SCAF4-202ENST00000399804 WDR43Q15061 677 aaKnown RBP eCLIP18.88■□□□□ 0.61
SCAF4-202ENST00000399804 ROCK2O75116 1388 aaKnown RBP18.87■□□□□ 0.61
SCAF4-202ENST00000399804 AFAP1Q8N556 730 aa18.86■□□□□ 0.61
SCAF4-202ENST00000399804 TMF1P82094 1093 aa18.86■□□□□ 0.61
SCAF4-202ENST00000399804 SUPT6HQ7KZ85 1726 aaKnown RBP18.85■□□□□ 0.61
SCAF4-202ENST00000399804 NAIPQ13075 1403 aa18.85■□□□□ 0.61
SCAF4-202ENST00000399804 NEFMP07197 916 aa18.84■□□□□ 0.61
SCAF4-202ENST00000399804 CC2D1BQ5T0F9 858 aaKnown RBP18.84■□□□□ 0.61
SCAF4-202ENST00000399804 CCDC144AA2RUR9 1427 aa18.82■□□□□ 0.6
SCAF4-202ENST00000399804 CANXP27824 592 aaKnown RBP18.81■□□□□ 0.6
SCAF4-202ENST00000399804 DAPK1P53355 1430 aa18.8■□□□□ 0.6
SCAF4-202ENST00000399804 ST20-MTHFSA0A0A6YYL1 179 aa18.8■□□□□ 0.6
SCAF4-202ENST00000399804 WASHC2CQ9Y4E1 1318 aa18.8■□□□□ 0.6
SCAF4-202ENST00000399804 SUPT16HQ9Y5B9 1047 aaKnown RBP18.78■□□□□ 0.6
SCAF4-202ENST00000399804 ARHGAP5Q13017 1502 aa18.78■□□□□ 0.6
SCAF4-202ENST00000399804 C9orf84Q5VXU9 1444 aa18.76■□□□□ 0.59
SCAF4-202ENST00000399804 TRHP20396 242 aaPredicted RBP18.76■□□□□ 0.59
SCAF4-202ENST00000399804 POGKQ9P215 609 aa18.75■□□□□ 0.59
SCAF4-202ENST00000399804 ARHGEF11O15085 1522 aa18.74■□□□□ 0.59
SCAF4-202ENST00000399804 SAFB2Q14151 953 aaKnown RBP eCLIP18.74■□□□□ 0.59
SCAF4-202ENST00000399804 ADAMTS12P58397 1594 aa18.73■□□□□ 0.59
SCAF4-202ENST00000399804 DAXXQ9UER7 740 aaPredicted RBP18.73■□□□□ 0.59
SCAF4-202ENST00000399804 ABCC5O15440 1437 aa18.72■□□□□ 0.59
SCAF4-202ENST00000399804 PTPN23Q9H3S7 1636 aa18.72■□□□□ 0.59
SCAF4-202ENST00000399804 THOC2Q8NI27 1593 aaKnown RBP18.71■□□□□ 0.59
SCAF4-202ENST00000399804 USP47Q96K76 1375 aa18.71■□□□□ 0.59
SCAF4-202ENST00000399804 WDR62O43379 1518 aa18.71■□□□□ 0.59
SCAF4-202ENST00000399804 CTTNBP2Q8WZ74 1663 aa18.71■□□□□ 0.59
SCAF4-202ENST00000399804 SLC24A1O60721 1099 aa18.71■□□□□ 0.59
SCAF4-202ENST00000399804 NUTM2DQ5VT03 806 aaPredicted RBP18.71■□□□□ 0.59
SCAF4-202ENST00000399804 PTPRKQ15262 1439 aa18.7■□□□□ 0.58
SCAF4-202ENST00000399804 ABCA5Q8WWZ7 1642 aa18.7■□□□□ 0.58
SCAF4-202ENST00000399804 TNNT2P45379 298 aaPredicted RBP18.7■□□□□ 0.58
SCAF4-202ENST00000399804 STK26Q9P289 416 aa18.7■□□□□ 0.58
SCAF4-202ENST00000399804 ROCK1Q13464 1354 aa18.69■□□□□ 0.58
SCAF4-202ENST00000399804 NBPF8Q3BBV2 869 aa18.68■□□□□ 0.58
SCAF4-202ENST00000399804 NUP153P49790 1475 aaKnown RBP18.68■□□□□ 0.58
SCAF4-202ENST00000399804 CCDC136Q96JN2 1154 aa18.68■□□□□ 0.58
SCAF4-202ENST00000399804 FAM69CQ0P6D2 419 aa18.68■□□□□ 0.58
SCAF4-202ENST00000399804 UGGT2Q9NYU1 1516 aa18.67■□□□□ 0.58
SCAF4-202ENST00000399804 EIF4G3O43432 1585 aaKnown RBP18.65■□□□□ 0.58
SCAF4-202ENST00000399804 CAMSAP2Q08AD1 1489 aa18.65■□□□□ 0.58
SCAF4-202ENST00000399804 PRKRIP1Q9H875 184 aaPredicted RBP18.64■□□□□ 0.57
SCAF4-202ENST00000399804 KIAA1107Q9UPP5 1409 aa18.64■□□□□ 0.57
SCAF4-202ENST00000399804 WASHC2AQ641Q2 1341 aa18.63■□□□□ 0.57
SCAF4-202ENST00000399804 ATP10BO94823 1461 aa18.63■□□□□ 0.57
SCAF4-202ENST00000399804 KTN1Q86UP2 1357 aaKnown RBP18.62■□□□□ 0.57
SCAF4-202ENST00000399804 NCOA1Q15788 1441 aa18.62■□□□□ 0.57
SCAF4-202ENST00000399804 WDR97A6NE52 1622 aa18.62■□□□□ 0.57
SCAF4-202ENST00000399804 TARBP1Q13395 1621 aaKnown RBP18.62■□□□□ 0.57
SCAF4-202ENST00000399804 SRPK2P78362 688 aaKnown RBP18.62■□□□□ 0.57
SCAF4-202ENST00000399804 SCAPERQ9BY12 1400 aa18.61■□□□□ 0.57
SCAF4-202ENST00000399804 CFAP53Q96M91 514 aa18.61■□□□□ 0.57
SCAF4-202ENST00000399804 KIF7Q2M1P5 1343 aa18.61■□□□□ 0.57
SCAF4-202ENST00000399804 GPATCH8Q9UKJ3 1502 aaKnown RBP18.61■□□□□ 0.57
SCAF4-202ENST00000399804 RALBP1Q15311 655 aa18.6■□□□□ 0.57
SCAF4-202ENST00000399804 AKNAQ7Z591 1439 aa18.6■□□□□ 0.57
SCAF4-202ENST00000399804 PPM1GO15355 546 aaPredicted RBP18.6■□□□□ 0.57
SCAF4-202ENST00000399804 TRAK1Q9UPV9 953 aa18.6■□□□□ 0.57
SCAF4-202ENST00000399804 PLEKHH2Q8IVE3 1493 aa18.6■□□□□ 0.57
SCAF4-202ENST00000399804 NEUROD2Q15784 382 aa18.59■□□□□ 0.57
SCAF4-202ENST00000399804 CCDC7Q96M83 1385 aa18.59■□□□□ 0.57
SCAF4-202ENST00000399804 RAPGEF6Q8TEU7 1601 aa18.59■□□□□ 0.57
SCAF4-202ENST00000399804 DISP1Q96F81 1524 aa18.58■□□□□ 0.57
SCAF4-202ENST00000399804 KIAA0556O60303 1618 aa18.58■□□□□ 0.56
SCAF4-202ENST00000399804 BCL11AQ9H165 835 aa18.57■□□□□ 0.56
SCAF4-202ENST00000399804 ANKRD30BQ9BXX2 1392 aa18.57■□□□□ 0.56
SCAF4-202ENST00000399804 NUP160Q12769 1436 aa18.57■□□□□ 0.56
SCAF4-202ENST00000399804 GOLGA6L2Q8N9W4 650 aaPredicted RBP18.56■□□□□ 0.56
SCAF4-202ENST00000399804 PANK3Q9H999 370 aa18.56■□□□□ 0.56
SCAF4-202ENST00000399804 CCDC141Q6ZP82 1450 aa18.55■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms