RNA–Protein interactions for RNA: ENST00000399002.6

SPTLC3-201, Transcript of serine palmitoyltransferase long chain base subunit 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SPTLC3, Length 6,169 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC3-201ENST00000399002 SIN3AQ96ST3 1273 aa10.63□□□□□ -0.71
SPTLC3-201ENST00000399002 CCDC18Q5T9S5 1454 aa10.63□□□□□ -0.71
SPTLC3-201ENST00000399002 HTATSF1O43719 755 aaKnown RBP10.63□□□□□ -0.71
SPTLC3-201ENST00000399002 MSNP26038 577 aaKnown RBP10.63□□□□□ -0.71
SPTLC3-201ENST00000399002 PMFBP1Q8TBY8 1022 aa10.63□□□□□ -0.71
SPTLC3-201ENST00000399002 GBP4Q96PP9 640 aa10.63□□□□□ -0.71
SPTLC3-201ENST00000399002 GOLGA6L4A6NEF3 574 aa10.62□□□□□ -0.71
SPTLC3-201ENST00000399002 HSPA5P11021 654 aaKnown RBP10.62□□□□□ -0.71
SPTLC3-201ENST00000399002 DCAF11Q8TEB1 546 aa10.62□□□□□ -0.71
SPTLC3-201ENST00000399002 RGS3P49796 1198 aa10.61□□□□□ -0.71
SPTLC3-201ENST00000399002 KCNJ4P48050 445 aa10.61□□□□□ -0.71
SPTLC3-201ENST00000399002 FGD1P98174 961 aa10.61□□□□□ -0.71
SPTLC3-201ENST00000399002 RWDD1Q9H446 243 aaPredicted RBP10.61□□□□□ -0.71
SPTLC3-201ENST00000399002 CECR2Q9BXF3 1484 aa10.61□□□□□ -0.71
SPTLC3-201ENST00000399002 RAPGEF2Q9Y4G8 1499 aa10.61□□□□□ -0.71
SPTLC3-201ENST00000399002 RSPH4AQ5TD94 716 aa10.61□□□□□ -0.71
SPTLC3-201ENST00000399002 U2SURPO15042 1029 aaKnown RBP10.6□□□□□ -0.71
SPTLC3-201ENST00000399002 HDAC5Q9UQL6 1122 aa10.6□□□□□ -0.71
SPTLC3-201ENST00000399002 MROH2BQ7Z745 1585 aa10.6□□□□□ -0.71
SPTLC3-201ENST00000399002 PDE3BQ13370 1112 aa10.6□□□□□ -0.71
SPTLC3-201ENST00000399002 SYAP1Q96A49 352 aaPredicted RBP10.6□□□□□ -0.71
SPTLC3-201ENST00000399002 A0A0G2JS52 829 aa10.59□□□□□ -0.71
SPTLC3-201ENST00000399002 RTF1Q92541 710 aaKnown RBP10.59□□□□□ -0.71
SPTLC3-201ENST00000399002 CSPP1Q1MSJ5 1256 aa10.59□□□□□ -0.71
SPTLC3-201ENST00000399002 UACAQ9BZF9 1416 aa10.59□□□□□ -0.71
SPTLC3-201ENST00000399002 ABCC8Q09428 1581 aa10.58□□□□□ -0.72
SPTLC3-201ENST00000399002 RAB3GAP2Q9H2M9 1393 aa10.58□□□□□ -0.72
SPTLC3-201ENST00000399002 NEUROD2Q15784 382 aa10.58□□□□□ -0.72
SPTLC3-201ENST00000399002 GOLGA2Q08379 1002 aa10.57□□□□□ -0.72
SPTLC3-201ENST00000399002 SRPK2P78362 688 aaKnown RBP10.56□□□□□ -0.72
SPTLC3-201ENST00000399002 TPM4P67936 248 aa10.56□□□□□ -0.72
SPTLC3-201ENST00000399002 RCAN3Q9UKA8 241 aa10.56□□□□□ -0.72
SPTLC3-201ENST00000399002 GPATCH3Q96I76 525 aa10.55□□□□□ -0.72
SPTLC3-201ENST00000399002 KIF15Q9NS87 1388 aa10.55□□□□□ -0.72
SPTLC3-201ENST00000399002 LMOD3Q0VAK6 560 aa10.55□□□□□ -0.72
SPTLC3-201ENST00000399002 KIAA1211Q6ZU35 1233 aa10.55□□□□□ -0.72
SPTLC3-201ENST00000399002 PKD2Q13563 968 aa10.54□□□□□ -0.72
SPTLC3-201ENST00000399002 B4GALNT3Q6L9W6 998 aa10.54□□□□□ -0.72
SPTLC3-201ENST00000399002 MPHOSPH9Q99550 1183 aa10.54□□□□□ -0.72
SPTLC3-201ENST00000399002 USP35Q9P2H5 1018 aa10.54□□□□□ -0.72
SPTLC3-201ENST00000399002 KIAA2012Q0VF49 1180 aa10.52□□□□□ -0.73
SPTLC3-201ENST00000399002 DRC7Q8IY82 874 aa10.52□□□□□ -0.73
SPTLC3-201ENST00000399002 CUX1P39880 1505 aa10.52□□□□□ -0.73
SPTLC3-201ENST00000399002 SPAG9O60271 1321 aaKnown RBP10.52□□□□□ -0.73
SPTLC3-201ENST00000399002 HMMRO75330 724 aa10.52□□□□□ -0.73
SPTLC3-201ENST00000399002 PLCB2Q00722 1185 aa10.52□□□□□ -0.73
SPTLC3-201ENST00000399002 EFCAB2Q5VUJ9 269 aa10.52□□□□□ -0.73
SPTLC3-201ENST00000399002 WIZO95785 1651 aa10.52□□□□□ -0.73
SPTLC3-201ENST00000399002 CHMP4CQ96CF2 233 aa10.52□□□□□ -0.73
SPTLC3-201ENST00000399002 CCDC34Q96HJ3 373 aa10.52□□□□□ -0.73
SPTLC3-201ENST00000399002 NPHP1O15259 732 aa10.52□□□□□ -0.73
SPTLC3-201ENST00000399002 SMARCA4P51532 1647 aa10.51□□□□□ -0.73
SPTLC3-201ENST00000399002 RBM19Q9Y4C8 960 aaKnown RBP10.51□□□□□ -0.73
SPTLC3-201ENST00000399002 NUP155O75694 1391 aa10.51□□□□□ -0.73
SPTLC3-201ENST00000399002 DEKP35659 375 aaKnown RBP10.51□□□□□ -0.73
SPTLC3-201ENST00000399002 PHF14O94880 888 aa10.51□□□□□ -0.73
SPTLC3-201ENST00000399002 GNL2Q13823 731 aaKnown RBP10.5□□□□□ -0.73
SPTLC3-201ENST00000399002 TERF2IPQ9NYB0 399 aa10.5□□□□□ -0.73
SPTLC3-201ENST00000399002 NAP1L2Q9ULW6 460 aaPredicted RBP10.5□□□□□ -0.73
SPTLC3-201ENST00000399002 ITPRIPQ8IWB1 547 aa10.48□□□□□ -0.73
SPTLC3-201ENST00000399002 MYBBP1AQ9BQG0 1328 aaKnown RBP10.48□□□□□ -0.73
SPTLC3-201ENST00000399002 NLRP13Q86W25 1043 aa10.48□□□□□ -0.73
SPTLC3-201ENST00000399002 NGEFQ8N5V2 710 aa10.48□□□□□ -0.73
SPTLC3-201ENST00000399002 IPO9Q96P70 1041 aaKnown RBP10.47□□□□□ -0.73
SPTLC3-201ENST00000399002 DDX11L8A8MPP1 907 aa10.47□□□□□ -0.73
SPTLC3-201ENST00000399002 STK31Q9BXU1 1019 aa10.47□□□□□ -0.73
SPTLC3-201ENST00000399002 GOLGA6L3A6NEY3 463 aa10.47□□□□□ -0.73
SPTLC3-201ENST00000399002 CENPJQ9HC77 1338 aaPredicted RBP10.45□□□□□ -0.74
SPTLC3-201ENST00000399002 LMOD2Q6P5Q4 547 aa10.45□□□□□ -0.74
SPTLC3-201ENST00000399002 CADPSQ9ULU8 1353 aa10.45□□□□□ -0.74
SPTLC3-201ENST00000399002 KIF3AQ9Y496 699 aa10.45□□□□□ -0.74
SPTLC3-201ENST00000399002 U2AF1L5P0DN76 240 aaPredicted RBP10.44□□□□□ -0.74
SPTLC3-201ENST00000399002 U2AF1Q01081 240 aaKnown RBP eCLIP10.44□□□□□ -0.74
SPTLC3-201ENST00000399002 KANK4Q5T7N3 995 aaPredicted RBP10.44□□□□□ -0.74
SPTLC3-201ENST00000399002 TPRNQ4KMQ1 711 aa10.44□□□□□ -0.74
SPTLC3-201ENST00000399002 CENPQQ7L2Z9 268 aaPredicted RBP10.44□□□□□ -0.74
SPTLC3-201ENST00000399002 SKOR2Q2VWA4 1001 aaPredicted RBP10.44□□□□□ -0.74
SPTLC3-201ENST00000399002 CCDC144AA2RUR9 1427 aa10.43□□□□□ -0.74
SPTLC3-201ENST00000399002 ST18O60284 1047 aa10.43□□□□□ -0.74
SPTLC3-201ENST00000399002 SMC4Q9NTJ3 1288 aa10.42□□□□□ -0.74
SPTLC3-201ENST00000399002 PLEKHG5O94827 1062 aa10.42□□□□□ -0.74
SPTLC3-201ENST00000399002 FHOD3Q2V2M9 1422 aa10.42□□□□□ -0.74
SPTLC3-201ENST00000399002 AAMPQ13685 434 aa10.41□□□□□ -0.74
SPTLC3-201ENST00000399002 STAC3Q96MF2 364 aa10.41□□□□□ -0.74
SPTLC3-201ENST00000399002 SENP3Q9H4L4 574 aaPredicted RBP10.41□□□□□ -0.74
SPTLC3-201ENST00000399002 ROCK1Q13464 1354 aa10.41□□□□□ -0.74
SPTLC3-201ENST00000399002 ATAD2BQ9ULI0 1458 aa10.4□□□□□ -0.75
SPTLC3-201ENST00000399002 DHX57Q6P158 1386 aaKnown RBP10.4□□□□□ -0.75
SPTLC3-201ENST00000399002 E9PSI1 815 aa10.4□□□□□ -0.75
SPTLC3-201ENST00000399002 TMX4Q9H1E5 349 aaPredicted RBP10.4□□□□□ -0.75
SPTLC3-201ENST00000399002 GOLGA6L1Q8N7Z2 621 aa10.39□□□□□ -0.75
SPTLC3-201ENST00000399002 EID1Q9Y6B2 187 aa10.39□□□□□ -0.75
SPTLC3-201ENST00000399002 ZBED9Q6R2W3 1325 aa10.39□□□□□ -0.75
SPTLC3-201ENST00000399002 ATP6V1DQ9Y5K8 247 aa10.39□□□□□ -0.75
SPTLC3-201ENST00000399002 HSP90B1P14625 803 aaKnown RBP10.38□□□□□ -0.75
SPTLC3-201ENST00000399002 GGT6Q6P531 493 aa10.38□□□□□ -0.75
SPTLC3-201ENST00000399002 CGNL1Q0VF96 1302 aa10.38□□□□□ -0.75
SPTLC3-201ENST00000399002 KIF16BQ96L93 1317 aa10.38□□□□□ -0.75
SPTLC3-201ENST00000399002 MIA2Q96PC5 1412 aa10.38□□□□□ -0.75
SPTLC3-201ENST00000399002 MFAP1P55081 439 aaKnown RBP10.38□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms