RNA–Protein interactions for RNA: ENST00000397053.6

UPF2-203, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 5 BASIC

Gene UPF2, Length 5,369 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-203ENST00000397053 DRC7Q8IY82 874 aa9.14□□□□□ -0.95
UPF2-203ENST00000397053 CLIP1P30622 1438 aa9.14□□□□□ -0.95
UPF2-203ENST00000397053 MSH5O43196 834 aa9.13□□□□□ -0.95
UPF2-203ENST00000397053 AMER1Q5JTC6 1135 aaPredicted RBP9.13□□□□□ -0.95
UPF2-203ENST00000397053 CCDC34Q96HJ3 373 aa9.13□□□□□ -0.95
UPF2-203ENST00000397053 DCAF11Q8TEB1 546 aa9.13□□□□□ -0.95
UPF2-203ENST00000397053 RASSF8Q8NHQ8 419 aa9.13□□□□□ -0.95
UPF2-203ENST00000397053 HSCBQ8IWL3 235 aa9.12□□□□□ -0.95
UPF2-203ENST00000397053 CFAP44Q96MT7 982 aa9.12□□□□□ -0.95
UPF2-203ENST00000397053 HDAC5Q9UQL6 1122 aa9.12□□□□□ -0.95
UPF2-203ENST00000397053 VPS53Q5VIR6 699 aa9.12□□□□□ -0.95
UPF2-203ENST00000397053 CEP89Q96ST8 783 aa9.12□□□□□ -0.95
UPF2-203ENST00000397053 EID1Q9Y6B2 187 aa9.11□□□□□ -0.95
UPF2-203ENST00000397053 MARCH6O60337 910 aa9.11□□□□□ -0.95
UPF2-203ENST00000397053 ZBTB4Q9P1Z0 1013 aaPredicted RBP9.11□□□□□ -0.95
UPF2-203ENST00000397053 DCAF8L1A6NGE4 600 aa9.11□□□□□ -0.95
UPF2-203ENST00000397053 STK31Q9BXU1 1019 aa9.11□□□□□ -0.95
UPF2-203ENST00000397053 IPO8O15397 1037 aaKnown RBP9.1□□□□□ -0.95
UPF2-203ENST00000397053 MIER1Q8N108 512 aa9.1□□□□□ -0.95
UPF2-203ENST00000397053 TOMM22Q9NS69 142 aa9.1□□□□□ -0.95
UPF2-203ENST00000397053 ZCCHC6Q5VYS8 1495 aaKnown RBP9.1□□□□□ -0.95
UPF2-203ENST00000397053 NAP1L5Q96NT1 182 aaPredicted RBP9.1□□□□□ -0.95
UPF2-203ENST00000397053 NGDNQ8NEJ9 315 aaKnown RBP9.1□□□□□ -0.95
UPF2-203ENST00000397053 SUPT16HQ9Y5B9 1047 aaKnown RBP9.1□□□□□ -0.95
UPF2-203ENST00000397053 HTATSF1O43719 755 aaKnown RBP9.09□□□□□ -0.95
UPF2-203ENST00000397053 CALD1Q05682 793 aaKnown RBP9.09□□□□□ -0.95
UPF2-203ENST00000397053 CCNB3Q8WWL7 1395 aa9.09□□□□□ -0.95
UPF2-203ENST00000397053 SPAG9O60271 1321 aaKnown RBP9.09□□□□□ -0.95
UPF2-203ENST00000397053 U2AF1L5P0DN76 240 aaPredicted RBP9.08□□□□□ -0.96
UPF2-203ENST00000397053 U2AF1Q01081 240 aaKnown RBP eCLIP9.08□□□□□ -0.96
UPF2-203ENST00000397053 CNKSR2Q8WXI2 1034 aa9.08□□□□□ -0.96
UPF2-203ENST00000397053 WWC1Q8IX03 1113 aa9.08□□□□□ -0.96
UPF2-203ENST00000397053 PHF23Q9BUL5 403 aaPredicted RBP9.07□□□□□ -0.96
UPF2-203ENST00000397053 A0A0U1RQG5 324 aaPredicted RBP9.07□□□□□ -0.96
UPF2-203ENST00000397053 KLHL34Q8N239 644 aa9.06□□□□□ -0.96
UPF2-203ENST00000397053 GPATCH3Q96I76 525 aa9.06□□□□□ -0.96
UPF2-203ENST00000397053 LTV1Q96GA3 475 aaPredicted RBP9.05□□□□□ -0.96
UPF2-203ENST00000397053 AMPHP49418 695 aa9.05□□□□□ -0.96
UPF2-203ENST00000397053 CTDP1Q9Y5B0 961 aaPredicted RBP9.05□□□□□ -0.96
UPF2-203ENST00000397053 CREBRFQ8IUR6 639 aa9.04□□□□□ -0.96
UPF2-203ENST00000397053 HSP90B1P14625 803 aaKnown RBP9.04□□□□□ -0.96
UPF2-203ENST00000397053 MSNP26038 577 aaKnown RBP9.04□□□□□ -0.96
UPF2-203ENST00000397053 EVA1CP58658 441 aa9.04□□□□□ -0.96
UPF2-203ENST00000397053 NUTM2FA1L443 756 aa9.03□□□□□ -0.96
UPF2-203ENST00000397053 TPM4P67936 248 aa9.03□□□□□ -0.96
UPF2-203ENST00000397053 SPRYD3Q8NCJ5 442 aa9.03□□□□□ -0.96
UPF2-203ENST00000397053 TCEAL9Q9UHQ7 104 aa9.03□□□□□ -0.96
UPF2-203ENST00000397053 CWC22Q9HCG8 908 aaKnown RBP9.03□□□□□ -0.96
UPF2-203ENST00000397053 ANO8Q9HCE9 1232 aaPredicted RBP9.03□□□□□ -0.96
UPF2-203ENST00000397053 MEX3CQ5U5Q3 659 aaKnown RBP9.03□□□□□ -0.96
UPF2-203ENST00000397053 EFCAB2Q5VUJ9 269 aa9.03□□□□□ -0.96
UPF2-203ENST00000397053 PPP4R2Q9NY27 417 aa9.03□□□□□ -0.96
UPF2-203ENST00000397053 HMMRO75330 724 aa9.02□□□□□ -0.96
UPF2-203ENST00000397053 SLC4A10Q6U841 1118 aa9.02□□□□□ -0.97
UPF2-203ENST00000397053 TRIM34Q9BYJ4 488 aa9.02□□□□□ -0.97
UPF2-203ENST00000397053 TRIM6-TRIM34B2RNG4 842 aa9.02□□□□□ -0.97
UPF2-203ENST00000397053 RAD21O60216 631 aa9.02□□□□□ -0.97
UPF2-203ENST00000397053 B4GALNT3Q6L9W6 998 aa9.02□□□□□ -0.97
UPF2-203ENST00000397053 ITPRIPQ8IWB1 547 aa9.01□□□□□ -0.97
UPF2-203ENST00000397053 TERF2IPQ9NYB0 399 aa9.01□□□□□ -0.97
UPF2-203ENST00000397053 SIN3AQ96ST3 1273 aa9.01□□□□□ -0.97
UPF2-203ENST00000397053 KIF27Q86VH2 1401 aa9□□□□□ -0.97
UPF2-203ENST00000397053 NOL10Q9BSC4 688 aaKnown RBP9□□□□□ -0.97
UPF2-203ENST00000397053 KIF3AQ9Y496 699 aa8.99□□□□□ -0.97
UPF2-203ENST00000397053 KIF3BO15066 747 aa8.99□□□□□ -0.97
UPF2-203ENST00000397053 TPM3P06753 285 aa8.99□□□□□ -0.97
UPF2-203ENST00000397053 PES1O00541 588 aaKnown RBP8.99□□□□□ -0.97
UPF2-203ENST00000397053 SF3A1Q15459 793 aaKnown RBP8.99□□□□□ -0.97
UPF2-203ENST00000397053 RWDD1Q9H446 243 aaPredicted RBP8.99□□□□□ -0.97
UPF2-203ENST00000397053 AKAP17AQ02040 695 aaKnown RBP8.98□□□□□ -0.97
UPF2-203ENST00000397053 FBXO3Q9UK99 471 aa8.98□□□□□ -0.97
UPF2-203ENST00000397053 AMOTL1Q8IY63 956 aa8.98□□□□□ -0.97
UPF2-203ENST00000397053 SYAP1Q96A49 352 aaPredicted RBP8.98□□□□□ -0.97
UPF2-203ENST00000397053 PKD2Q13563 968 aa8.98□□□□□ -0.97
UPF2-203ENST00000397053 GBP4Q96PP9 640 aa8.98□□□□□ -0.97
UPF2-203ENST00000397053 SYTL4Q96C24 671 aaPredicted RBP8.97□□□□□ -0.97
UPF2-203ENST00000397053 WASHC2CQ9Y4E1 1318 aa8.97□□□□□ -0.97
UPF2-203ENST00000397053 LMOD3Q0VAK6 560 aa8.97□□□□□ -0.97
UPF2-203ENST00000397053 RTN4Q9NQC3 1192 aaKnown RBP8.96□□□□□ -0.98
UPF2-203ENST00000397053 GOLGA6L1Q8N7Z2 621 aa8.96□□□□□ -0.98
UPF2-203ENST00000397053 SMC4Q9NTJ3 1288 aa8.96□□□□□ -0.98
UPF2-203ENST00000397053 DHX16O60231 1041 aaKnown RBP8.95□□□□□ -0.98
UPF2-203ENST00000397053 C1orf141Q5JVX7 400 aa8.95□□□□□ -0.98
UPF2-203ENST00000397053 NUTM2DQ5VT03 806 aaPredicted RBP8.95□□□□□ -0.98
UPF2-203ENST00000397053 TEFQ10587 303 aa8.95□□□□□ -0.98
UPF2-203ENST00000397053 FBXW7Q969H0 707 aa8.95□□□□□ -0.98
UPF2-203ENST00000397053 TPD52L1Q16890 204 aaPredicted RBP8.95□□□□□ -0.98
UPF2-203ENST00000397053 KTN1Q86UP2 1357 aaKnown RBP8.94□□□□□ -0.98
UPF2-203ENST00000397053 TSR1Q2NL82 804 aaKnown RBP8.94□□□□□ -0.98
UPF2-203ENST00000397053 SYNE3Q6ZMZ3 975 aa8.94□□□□□ -0.98
UPF2-203ENST00000397053 SUGP2Q8IX01 1082 aaKnown RBP eCLIP8.94□□□□□ -0.981e-6■■■□□ 14.8
UPF2-203ENST00000397053 TTC5Q8N0Z6 440 aa8.94□□□□□ -0.98
UPF2-203ENST00000397053 NOP58Q9Y2X3 529 aaKnown RBP8.94□□□□□ -0.98
UPF2-203ENST00000397053 CPLX2Q6PUV4 134 aaKnown RBP8.94□□□□□ -0.98
UPF2-203ENST00000397053 NOL8Q76FK4 1167 aaKnown RBP8.94□□□□□ -0.98
UPF2-203ENST00000397053 VPS37DQ86XT2 251 aa8.94□□□□□ -0.98
UPF2-203ENST00000397053 CCDC43Q96MW1 224 aaKnown RBP8.94□□□□□ -0.98
UPF2-203ENST00000397053 SAMD1Q6SPF0 538 aaPredicted RBP8.94□□□□□ -0.98
UPF2-203ENST00000397053 EEA1Q15075 1411 aa8.94□□□□□ -0.98
UPF2-203ENST00000397053 KIF16BQ96L93 1317 aa8.93□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms