RNA–Protein interactions for RNA: ENST00000375290.6

PTCH1-204, Transcript of patched 1, humanhuman

TSL 2

Gene PTCH1, Length 10,631 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-204ENST00000375290 LAS1LQ9Y4W2 734 aaKnown RBP12.87□□□□□ -0.35
PTCH1-204ENST00000375290 ARXQ96QS3 562 aa12.87□□□□□ -0.35
PTCH1-204ENST00000375290 HSP90AA2PQ14568 343 aaPredicted RBP12.87□□□□□ -0.35
PTCH1-204ENST00000375290 SALL2Q9Y467 1007 aaPredicted RBP12.86□□□□□ -0.35
PTCH1-204ENST00000375290 CENPQQ7L2Z9 268 aaPredicted RBP12.86□□□□□ -0.35
PTCH1-204ENST00000375290 B4GALNT3Q6L9W6 998 aa12.85□□□□□ -0.35
PTCH1-204ENST00000375290 RAB3GAP2Q9H2M9 1393 aa12.85□□□□□ -0.35
PTCH1-204ENST00000375290 KIF15Q9NS87 1388 aa12.85□□□□□ -0.35
PTCH1-204ENST00000375290 NLRP13Q86W25 1043 aa12.84□□□□□ -0.35
PTCH1-204ENST00000375290 RSPH4AQ5TD94 716 aa12.84□□□□□ -0.35
PTCH1-204ENST00000375290 CUX1P39880 1505 aa12.83□□□□□ -0.35
PTCH1-204ENST00000375290 ATP6V1DQ9Y5K8 247 aa12.83□□□□□ -0.36
PTCH1-204ENST00000375290 TPM4P67936 248 aa12.83□□□□□ -0.36
PTCH1-204ENST00000375290 CCDC18Q5T9S5 1454 aa12.83□□□□□ -0.36
PTCH1-204ENST00000375290 RRP7BPQ9NSQ0 103 aa12.82□□□□□ -0.36
PTCH1-204ENST00000375290 PPP1R15AO75807 674 aaPredicted RBP12.81□□□□□ -0.36
PTCH1-204ENST00000375290 KDM2AQ9Y2K7 1162 aa12.81□□□□□ -0.36
PTCH1-204ENST00000375290 RGS3P49796 1198 aa12.81□□□□□ -0.36
PTCH1-204ENST00000375290 CARMIL1Q5VZK9 1371 aa12.8□□□□□ -0.36
PTCH1-204ENST00000375290 KIF3AQ9Y496 699 aa12.8□□□□□ -0.36
PTCH1-204ENST00000375290 STAC3Q96MF2 364 aa12.8□□□□□ -0.36
PTCH1-204ENST00000375290 CGNL1Q0VF96 1302 aa12.8□□□□□ -0.36
PTCH1-204ENST00000375290 FAM161AQ3B820 660 aa12.79□□□□□ -0.36
PTCH1-204ENST00000375290 GOLGA6L1Q8N7Z2 621 aa12.78□□□□□ -0.36
PTCH1-204ENST00000375290 CHMP7Q8WUX9 453 aaPredicted RBP12.78□□□□□ -0.36
PTCH1-204ENST00000375290 ANKRD30AQ9BXX3 1397 aa12.78□□□□□ -0.36
PTCH1-204ENST00000375290 MYBBP1AQ9BQG0 1328 aaKnown RBP12.77□□□□□ -0.37
PTCH1-204ENST00000375290 ST18O60284 1047 aa12.77□□□□□ -0.37
PTCH1-204ENST00000375290 PDZRN4Q6ZMN7 1036 aaPredicted RBP12.77□□□□□ -0.37
PTCH1-204ENST00000375290 TNNT3P45378 269 aaPredicted RBP12.76□□□□□ -0.37
PTCH1-204ENST00000375290 UACAQ9BZF9 1416 aa12.76□□□□□ -0.37
PTCH1-204ENST00000375290 KIF21BO75037 1637 aa12.76□□□□□ -0.37
PTCH1-204ENST00000375290 CHGAP10645 457 aaKnown RBP12.76□□□□□ -0.37
PTCH1-204ENST00000375290 GPS2Q13227 327 aa12.75□□□□□ -0.37
PTCH1-204ENST00000375290 DHX8Q14562 1220 aaKnown RBP12.75□□□□□ -0.37
PTCH1-204ENST00000375290 GOLGA2Q08379 1002 aa12.75□□□□□ -0.37
PTCH1-204ENST00000375290 CCDC88BA6NC98 1476 aa12.75□□□□□ -0.37
PTCH1-204ENST00000375290 DHX57Q6P158 1386 aaKnown RBP12.74□□□□□ -0.37
PTCH1-204ENST00000375290 HMMRO75330 724 aa12.74□□□□□ -0.37
PTCH1-204ENST00000375290 ABCC8Q09428 1581 aa12.74□□□□□ -0.37
PTCH1-204ENST00000375290 KIF16BQ96L93 1317 aa12.74□□□□□ -0.37
PTCH1-204ENST00000375290 HDGFP51858 240 aaKnown RBP12.74□□□□□ -0.37
PTCH1-204ENST00000375290 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.74□□□□□ -0.37
PTCH1-204ENST00000375290 SOGA1O94964 1423 aa12.74□□□□□ -0.37
PTCH1-204ENST00000375290 NINLQ9Y2I6 1382 aa12.74□□□□□ -0.37
PTCH1-204ENST00000375290 HSPA5P11021 654 aaKnown RBP12.73□□□□□ -0.37
PTCH1-204ENST00000375290 CUX2O14529 1486 aa12.73□□□□□ -0.37
PTCH1-204ENST00000375290 ERICH3Q5RHP9 1530 aa12.73□□□□□ -0.37
PTCH1-204ENST00000375290 DRC7Q8IY82 874 aa12.73□□□□□ -0.37
PTCH1-204ENST00000375290 CARMIL2Q6F5E8 1435 aa12.73□□□□□ -0.37
PTCH1-204ENST00000375290 KIAA1211Q6ZU35 1233 aa12.73□□□□□ -0.37
PTCH1-204ENST00000375290 FRAT1Q92837 279 aaPredicted RBP12.72□□□□□ -0.37
PTCH1-204ENST00000375290 RAPGEF2Q9Y4G8 1499 aa12.72□□□□□ -0.37
PTCH1-204ENST00000375290 A0A0U1RQG5 324 aaPredicted RBP12.72□□□□□ -0.37
PTCH1-204ENST00000375290 SETQ01105 290 aaPredicted RBP12.72□□□□□ -0.37
PTCH1-204ENST00000375290 LMOD3Q0VAK6 560 aa12.72□□□□□ -0.37
PTCH1-204ENST00000375290 TPM3P06753 285 aa12.72□□□□□ -0.37
PTCH1-204ENST00000375290 RTN4Q9NQC3 1192 aaKnown RBP12.72□□□□□ -0.37
PTCH1-204ENST00000375290 WASHC2AQ641Q2 1341 aa12.7□□□□□ -0.38
PTCH1-204ENST00000375290 WASHC2CQ9Y4E1 1318 aa12.7□□□□□ -0.38
PTCH1-204ENST00000375290 FGD1P98174 961 aa12.7□□□□□ -0.38
PTCH1-204ENST00000375290 CNTLNQ9NXG0 1405 aa12.7□□□□□ -0.38
PTCH1-204ENST00000375290 SIN3AQ96ST3 1273 aa12.7□□□□□ -0.38
PTCH1-204ENST00000375290 MROH2BQ7Z745 1585 aa12.7□□□□□ -0.38
PTCH1-204ENST00000375290 MIA2Q96PC5 1412 aa12.7□□□□□ -0.38
PTCH1-204ENST00000375290 HIRIP3Q9BW71 556 aaPredicted RBP12.69□□□□□ -0.38
PTCH1-204ENST00000375290 KCNJ4P48050 445 aa12.69□□□□□ -0.38
PTCH1-204ENST00000375290 TPM2P07951 284 aa12.68□□□□□ -0.38
PTCH1-204ENST00000375290 SCAPERQ9BY12 1400 aa12.68□□□□□ -0.38
PTCH1-204ENST00000375290 ROCK1Q13464 1354 aa12.68□□□□□ -0.38
PTCH1-204ENST00000375290 GPATCH3Q96I76 525 aa12.68□□□□□ -0.38
PTCH1-204ENST00000375290 PLCB2Q00722 1185 aa12.68□□□□□ -0.38
PTCH1-204ENST00000375290 E9PSI1 815 aa12.67□□□□□ -0.38
PTCH1-204ENST00000375290 CENPJQ9HC77 1338 aaPredicted RBP12.67□□□□□ -0.38
PTCH1-204ENST00000375290 IL27Q8NEV9 243 aa12.67□□□□□ -0.38
PTCH1-204ENST00000375290 PDE4AP27815 886 aa12.66□□□□□ -0.38
PTCH1-204ENST00000375290 SMARCA4P51532 1647 aa12.66□□□□□ -0.38
PTCH1-204ENST00000375290 CALRP27797 417 aaKnown RBP12.66□□□□□ -0.38
PTCH1-204ENST00000375290 TAF3Q5VWG9 929 aa12.66□□□□□ -0.38
PTCH1-204ENST00000375290 DCAF11Q8TEB1 546 aa12.66□□□□□ -0.38
PTCH1-204ENST00000375290 PDIA4P13667 645 aaKnown RBP12.66□□□□□ -0.38
PTCH1-204ENST00000375290 HMGN5P82970 282 aaKnown RBP12.66□□□□□ -0.38
PTCH1-204ENST00000375290 TEX35Q5T0J7 233 aa12.66□□□□□ -0.38
PTCH1-204ENST00000375290 ARID3CA6NKF2 412 aa12.66□□□□□ -0.38
PTCH1-204ENST00000375290 MRE11P49959 708 aa12.65□□□□□ -0.38
PTCH1-204ENST00000375290 MPHOSPH9Q99550 1183 aa12.65□□□□□ -0.38
PTCH1-204ENST00000375290 NOM1Q5C9Z4 860 aaKnown RBP12.64□□□□□ -0.39
PTCH1-204ENST00000375290 MORC1Q86VD1 984 aa12.64□□□□□ -0.39
PTCH1-204ENST00000375290 RRP1P56182 461 aaKnown RBP12.64□□□□□ -0.39
PTCH1-204ENST00000375290 PRKRIP1Q9H875 184 aaPredicted RBP12.64□□□□□ -0.39
PTCH1-204ENST00000375290 FAM43AQ8N2R8 423 aa12.63□□□□□ -0.39
PTCH1-204ENST00000375290 REC8O95072 547 aa12.63□□□□□ -0.39
PTCH1-204ENST00000375290 CHMP5Q9NZZ3 219 aa12.63□□□□□ -0.39
PTCH1-204ENST00000375290 NUCB2P80303 420 aa12.63□□□□□ -0.39
PTCH1-204ENST00000375290 WIZO95785 1651 aa12.62□□□□□ -0.39
PTCH1-204ENST00000375290 OS9Q13438 667 aaPredicted RBP12.62□□□□□ -0.39
PTCH1-204ENST00000375290 CECR2Q9BXF3 1484 aa12.62□□□□□ -0.39
PTCH1-204ENST00000375290 CCDC66A2RUB6 948 aa12.62□□□□□ -0.39
PTCH1-204ENST00000375290 CCDC70Q6NSX1 233 aa12.62□□□□□ -0.39
PTCH1-204ENST00000375290 DIAPH3Q9NSV4 1193 aa12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms