RNA–Protein interactions for RNA: ENST00000372733.3

SDC4-201, Transcript of syndecan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC4, Length 2,613 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4-201ENST00000372733 MRS2Q9HD23 443 aa22.57■■□□□ 1.2
SDC4-201ENST00000372733 MIA2Q96PC5 1412 aa22.56■■□□□ 1.2
SDC4-201ENST00000372733 PPP4R2Q9NY27 417 aa22.56■■□□□ 1.2
SDC4-201ENST00000372733 NBPF8Q3BBV2 869 aa22.55■■□□□ 1.2
SDC4-201ENST00000372733 TEX14Q8IWB6 1497 aa22.53■■□□□ 1.2
SDC4-201ENST00000372733 ERICH6BQ5W0A0 696 aa22.53■■□□□ 1.2
SDC4-201ENST00000372733 IQGAP2Q13576 1575 aa22.53■■□□□ 1.2
SDC4-201ENST00000372733 WDR62O43379 1518 aa22.53■■□□□ 1.2
SDC4-201ENST00000372733 RPRD2Q5VT52 1461 aaKnown RBP22.53■■□□□ 1.2
SDC4-201ENST00000372733 ANKRD30BQ9BXX2 1392 aa22.52■■□□□ 1.2
SDC4-201ENST00000372733 TARBP1Q13395 1621 aaKnown RBP22.52■■□□□ 1.2
SDC4-201ENST00000372733 ZBED9Q6R2W3 1325 aa22.51■■□□□ 1.19
SDC4-201ENST00000372733 KIF7Q2M1P5 1343 aa22.5■■□□□ 1.19
SDC4-201ENST00000372733 PDS5BQ9NTI5 1447 aa22.49■■□□□ 1.19
SDC4-201ENST00000372733 DAPK1P53355 1430 aa22.49■■□□□ 1.19
SDC4-201ENST00000372733 B4GALNT3Q6L9W6 998 aa22.49■■□□□ 1.19
SDC4-201ENST00000372733 ERICH6Q7L0X2 663 aa22.47■■□□□ 1.19
SDC4-201ENST00000372733 PBRM1Q86U86 1689 aa22.47■■□□□ 1.19
SDC4-201ENST00000372733 SPATA31E1Q6ZUB1 1445 aa22.46■■□□□ 1.19
SDC4-201ENST00000372733 ROCK1Q13464 1354 aa22.44■■□□□ 1.18
SDC4-201ENST00000372733 ABCC5O15440 1437 aa22.44■■□□□ 1.18
SDC4-201ENST00000372733 ZNF644Q9H582 1327 aaPredicted RBP22.43■■□□□ 1.18
SDC4-201ENST00000372733 ADAMTS12P58397 1594 aa22.43■■□□□ 1.18
SDC4-201ENST00000372733 DNMT1P26358 1616 aaKnown RBP22.43■■□□□ 1.18
SDC4-201ENST00000372733 SLC4A1APQ9BWU0 796 aaKnown RBP22.43■■□□□ 1.18
SDC4-201ENST00000372733 POLR1AO95602 1720 aaPredicted RBP22.41■■□□□ 1.18
SDC4-201ENST00000372733 CNGB1Q14028 1251 aaPredicted RBP22.39■■□□□ 1.17
SDC4-201ENST00000372733 PZPP20742 1482 aa22.34■■□□□ 1.17
SDC4-201ENST00000372733 DHX29Q7Z478 1369 aaKnown RBP22.33■■□□□ 1.17
SDC4-201ENST00000372733 NUP153P49790 1475 aaKnown RBP22.32■■□□□ 1.16
SDC4-201ENST00000372733 POLR3GLQ9BT43 218 aa22.32■■□□□ 1.16
SDC4-201ENST00000372733 SMG6Q86US8 1419 aaKnown RBP22.3■■□□□ 1.16
SDC4-201ENST00000372733 MBD5Q9P267 1494 aa22.3■■□□□ 1.16
SDC4-201ENST00000372733 ZNF326Q5BKZ1 582 aaKnown RBP22.3■■□□□ 1.16
SDC4-201ENST00000372733 BCORL1Q5H9F3 1711 aa22.29■■□□□ 1.16
SDC4-201ENST00000372733 KIAA0556O60303 1618 aa22.29■■□□□ 1.16
SDC4-201ENST00000372733 USP47Q96K76 1375 aa22.29■■□□□ 1.16
SDC4-201ENST00000372733 DISP1Q96F81 1524 aa22.28■■□□□ 1.16
SDC4-201ENST00000372733 SENP3-EIF4A1A0A087X0R7 540 aa22.27■■□□□ 1.16
SDC4-201ENST00000372733 CAMSAP2Q08AD1 1489 aa22.25■■□□□ 1.15
SDC4-201ENST00000372733 NUDCQ9Y266 331 aa22.25■■□□□ 1.15
SDC4-201ENST00000372733 RAPGEF6Q8TEU7 1601 aa22.25■■□□□ 1.15
SDC4-201ENST00000372733 PRG4Q92954 1404 aaPredicted RBP22.23■■□□□ 1.15
SDC4-201ENST00000372733 KIAA1107Q9UPP5 1409 aa22.23■■□□□ 1.15
SDC4-201ENST00000372733 KIF14Q15058 1648 aa22.22■■□□□ 1.15
SDC4-201ENST00000372733 KDM5CP41229 1560 aa22.2■■□□□ 1.15
SDC4-201ENST00000372733 KIAA0586Q9BVV6 1533 aa22.2■■□□□ 1.14
SDC4-201ENST00000372733 ZNF608Q9ULD9 1512 aaPredicted RBP22.2■■□□□ 1.14
SDC4-201ENST00000372733 ADGBQ8N7X0 1667 aa22.2■■□□□ 1.14
SDC4-201ENST00000372733 CFDP1Q9UEE9 299 aaPredicted RBP22.2■■□□□ 1.14
SDC4-201ENST00000372733 PKD2Q13563 968 aa22.19■■□□□ 1.14
SDC4-201ENST00000372733 RNF123Q5XPI4 1314 aa22.19■■□□□ 1.14
SDC4-201ENST00000372733 TROQ12816 1431 aaPredicted RBP22.18■■□□□ 1.14
SDC4-201ENST00000372733 ZNF777Q9ULD5 760 aaPredicted RBP22.18■■□□□ 1.14
SDC4-201ENST00000372733 CCDC136Q96JN2 1154 aa22.17■■□□□ 1.14
SDC4-201ENST00000372733 NOP58Q9Y2X3 529 aaKnown RBP22.17■■□□□ 1.14
SDC4-201ENST00000372733 MRC2Q9UBG0 1479 aa22.16■■□□□ 1.14
SDC4-201ENST00000372733 ITSN2Q9NZM3 1697 aa22.15■■□□□ 1.14
SDC4-201ENST00000372733 PAK3O75914 559 aaPredicted RBP22.15■■□□□ 1.14
SDC4-201ENST00000372733 GPATCH8Q9UKJ3 1502 aaKnown RBP22.15■■□□□ 1.14
SDC4-201ENST00000372733 ADGRL2O95490 1459 aa22.15■■□□□ 1.14
SDC4-201ENST00000372733 CROCC2H7BZ55 1655 aa22.14■■□□□ 1.13
SDC4-201ENST00000372733 PNISRQ8TF01 805 aaKnown RBP22.14■■□□□ 1.13
SDC4-201ENST00000372733 TMC1Q8TDI8 760 aa22.12■■□□□ 1.13
SDC4-201ENST00000372733 RALGAPBQ86X10 1494 aa22.11■■□□□ 1.13
SDC4-201ENST00000372733 PLB1Q6P1J6 1458 aa22.11■■□□□ 1.13
SDC4-201ENST00000372733 ARID4BQ4LE39 1312 aaPredicted RBP22.11■■□□□ 1.13
SDC4-201ENST00000372733 DEKP35659 375 aaKnown RBP22.1■■□□□ 1.13
SDC4-201ENST00000372733 MYT1LQ9UL68 1186 aa22.1■■□□□ 1.13
SDC4-201ENST00000372733 ANKRD30AQ9BXX3 1397 aa22.1■■□□□ 1.13
SDC4-201ENST00000372733 GRIN2AQ12879 1464 aa22.09■■□□□ 1.13
SDC4-201ENST00000372733 ANKRD50Q9ULJ7 1429 aa22.09■■□□□ 1.13
SDC4-201ENST00000372733 NBR1Q14596 966 aa22.09■■□□□ 1.13
SDC4-201ENST00000372733 ROCK2O75116 1388 aaKnown RBP22.08■■□□□ 1.13
SDC4-201ENST00000372733 UHRF1BP1Q6BDS2 1440 aa22.08■■□□□ 1.13
SDC4-201ENST00000372733 CARD11Q9BXL7 1154 aa22.08■■□□□ 1.13
SDC4-201ENST00000372733 IFT140Q96RY7 1462 aa22.07■■□□□ 1.12
SDC4-201ENST00000372733 KIF15Q9NS87 1388 aa22.06■■□□□ 1.12
SDC4-201ENST00000372733 ADCY10Q96PN6 1610 aa22.05■■□□□ 1.12
SDC4-201ENST00000372733 NUP155O75694 1391 aa22.04■■□□□ 1.12
SDC4-201ENST00000372733 LRPPRCP42704 1394 aaKnown RBP22.03■■□□□ 1.12
SDC4-201ENST00000372733 ANP32AP39687 249 aaKnown RBP22.03■■□□□ 1.12
SDC4-201ENST00000372733 KDM2AQ9Y2K7 1162 aa22.03■■□□□ 1.12
SDC4-201ENST00000372733 ST20-MTHFSA0A0A6YYL1 179 aa22.02■■□□□ 1.12
SDC4-201ENST00000372733 ARHGEF12Q9NZN5 1544 aa22.02■■□□□ 1.12
SDC4-201ENST00000372733 MYBBP1AQ9BQG0 1328 aaKnown RBP22■■□□□ 1.11
SDC4-201ENST00000372733 EIF4G3O43432 1585 aaKnown RBP22■■□□□ 1.11
SDC4-201ENST00000372733 IPO9Q96P70 1041 aaKnown RBP22■■□□□ 1.11
SDC4-201ENST00000372733 C9orf84Q5VXU9 1444 aa21.99■■□□□ 1.11
SDC4-201ENST00000372733 BRD4O60885 1362 aaPredicted RBP21.99■■□□□ 1.11
SDC4-201ENST00000372733 CDC42BPAQ5VT25 1732 aa21.99■■□□□ 1.11
SDC4-201ENST00000372733 RRP1P56182 461 aaKnown RBP21.96■■□□□ 1.11
SDC4-201ENST00000372733 E9PCH4 1651 aa21.96■■□□□ 1.11
SDC4-201ENST00000372733 CEP170Q5SW79 1584 aa21.96■■□□□ 1.11
SDC4-201ENST00000372733 DCAF11Q8TEB1 546 aa21.95■■□□□ 1.11
SDC4-201ENST00000372733 SHANK2Q9UPX8 1470 aa21.95■■□□□ 1.1
SDC4-201ENST00000372733 SALL2Q9Y467 1007 aaPredicted RBP21.95■■□□□ 1.1
SDC4-201ENST00000372733 RALBP1Q15311 655 aa21.94■■□□□ 1.1
SDC4-201ENST00000372733 EXOC6Q8TAG9 804 aa21.94■■□□□ 1.1
SDC4-201ENST00000372733 KDM5DQ9BY66 1539 aa21.94■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms