RNA–Protein interactions for RNA: ENST00000370818.7

GPC3-201, Transcript of glypican 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene GPC3, Length 2,568 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC3-201ENST00000370818 SHROOM2Q13796 1616 aa18.49■□□□□ 0.55
GPC3-201ENST00000370818 DNMT1P26358 1616 aaKnown RBP18.48■□□□□ 0.55
GPC3-201ENST00000370818 TIMELESSQ9UNS1 1208 aa18.48■□□□□ 0.55
GPC3-201ENST00000370818 KDM6BO15054 1643 aa18.47■□□□□ 0.55
GPC3-201ENST00000370818 ROCK1Q13464 1354 aa18.47■□□□□ 0.55
GPC3-201ENST00000370818 PLEKHD1A6NEE1 506 aa18.46■□□□□ 0.55
GPC3-201ENST00000370818 CFDP1Q9UEE9 299 aaPredicted RBP18.46■□□□□ 0.55
GPC3-201ENST00000370818 CAMSAP2Q08AD1 1489 aa18.45■□□□□ 0.54
GPC3-201ENST00000370818 ITSN2Q9NZM3 1697 aa18.45■□□□□ 0.54
GPC3-201ENST00000370818 DENND4BO75064 1496 aaPredicted RBP18.43■□□□□ 0.54
GPC3-201ENST00000370818 ABCC10Q5T3U5 1492 aa18.43■□□□□ 0.54
GPC3-201ENST00000370818 YTHDC1Q96MU7 727 aaKnown RBP18.42■□□□□ 0.54
GPC3-201ENST00000370818 MIER1Q8N108 512 aa18.41■□□□□ 0.54
GPC3-201ENST00000370818 ERCC6L2Q5T890 1561 aa18.41■□□□□ 0.54
GPC3-201ENST00000370818 BCL11AQ9H165 835 aa18.41■□□□□ 0.54
GPC3-201ENST00000370818 PPP1R15AO75807 674 aaPredicted RBP18.39■□□□□ 0.54
GPC3-201ENST00000370818 TRIM52Q96A61 297 aa18.38■□□□□ 0.53
GPC3-201ENST00000370818 ZNF777Q9ULD5 760 aaPredicted RBP18.38■□□□□ 0.53
GPC3-201ENST00000370818 CLASP1Q7Z460 1538 aa18.38■□□□□ 0.53
GPC3-201ENST00000370818 CDC42BPAQ5VT25 1732 aa18.37■□□□□ 0.53
GPC3-201ENST00000370818 TONSLQ96HA7 1378 aa18.35■□□□□ 0.53
GPC3-201ENST00000370818 NCOA1Q15788 1441 aa18.35■□□□□ 0.53
GPC3-201ENST00000370818 MPHOSPH9Q99550 1183 aa18.35■□□□□ 0.53
GPC3-201ENST00000370818 ADGRL2O95490 1459 aa18.33■□□□□ 0.52
GPC3-201ENST00000370818 ABCC2Q92887 1545 aa18.32■□□□□ 0.52
GPC3-201ENST00000370818 CROCC2H7BZ55 1655 aa18.31■□□□□ 0.52
GPC3-201ENST00000370818 KDM5BQ9UGL1 1544 aa18.3■□□□□ 0.52
GPC3-201ENST00000370818 ANP32EQ9BTT0 268 aa18.3■□□□□ 0.52
GPC3-201ENST00000370818 ADGBQ8N7X0 1667 aa18.29■□□□□ 0.52
GPC3-201ENST00000370818 FOXD1Q16676 465 aa18.27■□□□□ 0.52
GPC3-201ENST00000370818 ANKRD30AQ9BXX3 1397 aa18.26■□□□□ 0.51
GPC3-201ENST00000370818 SHANK2Q9UPX8 1470 aa18.26■□□□□ 0.51
GPC3-201ENST00000370818 ANKRD30BQ9BXX2 1392 aa18.25■□□□□ 0.51
GPC3-201ENST00000370818 MBD5Q9P267 1494 aa18.25■□□□□ 0.51
GPC3-201ENST00000370818 C9orf84Q5VXU9 1444 aa18.24■□□□□ 0.51
GPC3-201ENST00000370818 PREX2Q70Z35 1606 aa18.24■□□□□ 0.51
GPC3-201ENST00000370818 PZPP20742 1482 aa18.23■□□□□ 0.51
GPC3-201ENST00000370818 CDC42BPBQ9Y5S2 1711 aa18.23■□□□□ 0.51
GPC3-201ENST00000370818 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP18.23■□□□□ 0.51
GPC3-201ENST00000370818 HNRNPMP52272 730 aaKnown RBP eCLIP18.23■□□□□ 0.516e-7■■■□□ 17.1
GPC3-201ENST00000370818 SLC4A1APQ9BWU0 796 aaKnown RBP18.23■□□□□ 0.51
GPC3-201ENST00000370818 TTC37Q6PGP7 1564 aa18.23■□□□□ 0.51
GPC3-201ENST00000370818 UHRF1BP1LA0JNW5 1464 aa18.22■□□□□ 0.51
GPC3-201ENST00000370818 SAMD9LQ8IVG5 1584 aa18.22■□□□□ 0.51
GPC3-201ENST00000370818 ARHGEF5Q12774 1597 aa18.22■□□□□ 0.51
GPC3-201ENST00000370818 ANKRD50Q9ULJ7 1429 aa18.22■□□□□ 0.51
GPC3-201ENST00000370818 TSPY4P0CV99 314 aa18.19■□□□□ 0.5
GPC3-201ENST00000370818 TSPY10P0CW01 314 aa18.19■□□□□ 0.5
GPC3-201ENST00000370818 HIRIP3Q9BW71 556 aaPredicted RBP18.19■□□□□ 0.5
GPC3-201ENST00000370818 ZCCHC11Q5TAX3 1644 aaKnown RBP18.18■□□□□ 0.5
GPC3-201ENST00000370818 RPRD2Q5VT52 1461 aaKnown RBP18.18■□□□□ 0.5
GPC3-201ENST00000370818 CCDC141Q6ZP82 1450 aa18.17■□□□□ 0.5
GPC3-201ENST00000370818 L3MBTL2Q969R5 705 aa18.16■□□□□ 0.5
GPC3-201ENST00000370818 ARHGAP5Q13017 1502 aa18.15■□□□□ 0.5
GPC3-201ENST00000370818 KCNH8Q96L42 1107 aa18.15■□□□□ 0.5
GPC3-201ENST00000370818 KIF15Q9NS87 1388 aa18.15■□□□□ 0.5
GPC3-201ENST00000370818 RSPH4AQ5TD94 716 aa18.15■□□□□ 0.5
GPC3-201ENST00000370818 TSHZ2Q9NRE2 1034 aa18.14■□□□□ 0.49
GPC3-201ENST00000370818 SYCP2Q9BX26 1530 aa18.14■□□□□ 0.49
GPC3-201ENST00000370818 SUPT16HQ9Y5B9 1047 aaKnown RBP18.13■□□□□ 0.49
GPC3-201ENST00000370818 KIAA1107Q9UPP5 1409 aa18.12■□□□□ 0.49
GPC3-201ENST00000370818 DDX10Q13206 875 aaKnown RBP18.12■□□□□ 0.49
GPC3-201ENST00000370818 TEX14Q8IWB6 1497 aa18.12■□□□□ 0.49
GPC3-201ENST00000370818 MYO5CQ9NQX4 1742 aa18.11■□□□□ 0.49
GPC3-201ENST00000370818 PKD2Q13563 968 aa18.1■□□□□ 0.49
GPC3-201ENST00000370818 NUP155O75694 1391 aa18.1■□□□□ 0.49
GPC3-201ENST00000370818 PLCH2O75038 1416 aa18.1■□□□□ 0.49
GPC3-201ENST00000370818 KDM5DQ9BY66 1539 aa18.09■□□□□ 0.49
GPC3-201ENST00000370818 PLEKHH2Q8IVE3 1493 aa18.07■□□□□ 0.48
GPC3-201ENST00000370818 ARHGEF12Q9NZN5 1544 aa18.07■□□□□ 0.48
GPC3-201ENST00000370818 MAST1Q9Y2H9 1570 aa18.07■□□□□ 0.48
GPC3-201ENST00000370818 NBPF8Q3BBV2 869 aa18.05■□□□□ 0.48
GPC3-201ENST00000370818 EFCAB2Q5VUJ9 269 aa18.03■□□□□ 0.48
GPC3-201ENST00000370818 HSPA5P11021 654 aaKnown RBP18.02■□□□□ 0.48
GPC3-201ENST00000370818 WDR7Q9Y4E6 1490 aa18.02■□□□□ 0.48
GPC3-201ENST00000370818 OSCARQ8IYS5 282 aa18.02■□□□□ 0.47
GPC3-201ENST00000370818 ABCC1P33527 1531 aa18■□□□□ 0.47
GPC3-201ENST00000370818 PLXNC1O60486 1568 aa18■□□□□ 0.47
GPC3-201ENST00000370818 EIF4G2P78344 907 aaKnown RBP eCLIP18■□□□□ 0.47
GPC3-201ENST00000370818 ARAP3Q8WWN8 1544 aa17.98■□□□□ 0.47
GPC3-201ENST00000370818 FAM135AQ9P2D6 1515 aa17.98■□□□□ 0.47
GPC3-201ENST00000370818 TRAPPC8Q9Y2L5 1435 aa17.98■□□□□ 0.47
GPC3-201ENST00000370818 WASHC2AQ641Q2 1341 aa17.96■□□□□ 0.47
GPC3-201ENST00000370818 UNC13BO14795 1591 aa17.95■□□□□ 0.46
GPC3-201ENST00000370818 DUOX2Q9NRD8 1548 aa17.95■□□□□ 0.46
GPC3-201ENST00000370818 SPATA31E1Q6ZUB1 1445 aa17.93■□□□□ 0.46
GPC3-201ENST00000370818 ASXL2Q76L83 1435 aa17.93■□□□□ 0.46
GPC3-201ENST00000370818 ABCA9Q8IUA7 1624 aa17.92■□□□□ 0.46
GPC3-201ENST00000370818 ERBINQ96RT1 1412 aa17.92■□□□□ 0.46
GPC3-201ENST00000370818 AFAP1Q8N556 730 aa17.91■□□□□ 0.46
GPC3-201ENST00000370818 C11orf95C9JLR9 678 aaPredicted RBP17.9■□□□□ 0.46
GPC3-201ENST00000370818 MAGI2Q86UL8 1455 aa17.9■□□□□ 0.46
GPC3-201ENST00000370818 FANCAO15360 1455 aa17.9■□□□□ 0.46
GPC3-201ENST00000370818 ANP32CO43423 234 aa17.89■□□□□ 0.46
GPC3-201ENST00000370818 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.89■□□□□ 0.466e-7■□□□□ 8.4
GPC3-201ENST00000370818 RTEL1-TNFRSF6BF6WH68 1400 aa17.89■□□□□ 0.45
GPC3-201ENST00000370818 IQGAP3Q86VI3 1631 aa17.89■□□□□ 0.45
GPC3-201ENST00000370818 UHRF1BP1Q6BDS2 1440 aa17.88■□□□□ 0.45
GPC3-201ENST00000370818 SPAG9O60271 1321 aaKnown RBP17.88■□□□□ 0.45
GPC3-201ENST00000370818 PLA2R1Q13018 1463 aa17.88■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms