RNA–Protein interactions for RNA: ENST00000362455.1

RNU4-39P-201, Transcript of RNA, U4 small nuclear 39, pseudogene, humanhuman

BASIC

Gene RNU4-39P, Length 127 nt, Biotype snRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-39P-201ENST00000362455 OCEL1Q9H607 264 aa11.95□□□□□ -0.5
RNU4-39P-201ENST00000362455 IRX5P78411 483 aaPredicted RBP11.94□□□□□ -0.5
RNU4-39P-201ENST00000362455 ARIH1Q9Y4X5 557 aaPredicted RBP11.94□□□□□ -0.5
RNU4-39P-201ENST00000362455 PELP1Q8IZL8 1130 aaKnown RBP11.93□□□□□ -0.5
RNU4-39P-201ENST00000362455 PDCD7Q8N8D1 485 aaKnown RBP11.93□□□□□ -0.5
RNU4-39P-201ENST00000362455 SLC39A7Q92504 469 aa11.93□□□□□ -0.5
RNU4-39P-201ENST00000362455 GPHNQ9NQX3 736 aaPredicted RBP11.93□□□□□ -0.5
RNU4-39P-201ENST00000362455 PLCG2P16885 1265 aa11.92□□□□□ -0.5
RNU4-39P-201ENST00000362455 PPP1R15BQ5SWA1 713 aa11.92□□□□□ -0.5
RNU4-39P-201ENST00000362455 MICALL2Q8IY33 904 aa11.92□□□□□ -0.5
RNU4-39P-201ENST00000362455 SEC24BO95487 1268 aa11.9□□□□□ -0.5
RNU4-39P-201ENST00000362455 POTEIP0CG38 1075 aa11.9□□□□□ -0.5
RNU4-39P-201ENST00000362455 C7P10643 843 aa11.9□□□□□ -0.5
RNU4-39P-201ENST00000362455 DSG2Q14126 1118 aa11.86□□□□□ -0.51
RNU4-39P-201ENST00000362455 ZC3H15Q8WU90 426 aaKnown RBP11.86□□□□□ -0.51
RNU4-39P-201ENST00000362455 G3V3G9 751 aa11.85□□□□□ -0.51
RNU4-39P-201ENST00000362455 SMYD5Q6GMV2 418 aa11.85□□□□□ -0.51
RNU4-39P-201ENST00000362455 TMC2Q8TDI7 906 aa11.85□□□□□ -0.51
RNU4-39P-201ENST00000362455 METRNQ9UJH8 293 aa11.85□□□□□ -0.51
RNU4-39P-201ENST00000362455 BOLA1Q9Y3E2 137 aa11.84□□□□□ -0.51
RNU4-39P-201ENST00000362455 L3MBTL3Q96JM7 780 aaPredicted RBP11.83□□□□□ -0.52
RNU4-39P-201ENST00000362455 TMEM121BQ9BXQ6 578 aaPredicted RBP11.83□□□□□ -0.52
RNU4-39P-201ENST00000362455 EMILIN3Q9NT22 766 aa11.82□□□□□ -0.52
RNU4-39P-201ENST00000362455 COLQQ9Y215 455 aaPredicted RBP11.82□□□□□ -0.52
RNU4-39P-201ENST00000362455 FOXK1P85037 733 aa11.81□□□□□ -0.52
RNU4-39P-201ENST00000362455 DPYSL4O14531 572 aa11.8□□□□□ -0.52
RNU4-39P-201ENST00000362455 C2orf72A6NCS6 295 aa11.78□□□□□ -0.52
RNU4-39P-201ENST00000362455 MLLT3P42568 568 aaPredicted RBP11.78□□□□□ -0.52
RNU4-39P-201ENST00000362455 POTEFA5A3E0 1075 aa11.77□□□□□ -0.53
RNU4-39P-201ENST00000362455 KIF3CO14782 793 aa11.76□□□□□ -0.53
RNU4-39P-201ENST00000362455 PLPP6Q8IY26 295 aa11.76□□□□□ -0.53
RNU4-39P-201ENST00000362455 SPDYE16A6NNV3 312 aaPredicted RBP11.74□□□□□ -0.53
RNU4-39P-201ENST00000362455 PDIA6Q15084 440 aa11.74□□□□□ -0.53
RNU4-39P-201ENST00000362455 ZMYND10O75800 440 aa11.73□□□□□ -0.53
RNU4-39P-201ENST00000362455 RBM26Q5T8P6 1007 aaKnown RBP11.73□□□□□ -0.53
RNU4-39P-201ENST00000362455 SLC24A3Q9HC58 644 aa11.73□□□□□ -0.53
RNU4-39P-201ENST00000362455 BRPF1P55201 1214 aaPredicted RBP11.69□□□□□ -0.54
RNU4-39P-201ENST00000362455 TMEM92Q6UXU6 159 aa11.69□□□□□ -0.54
RNU4-39P-201ENST00000362455 TMEM132AQ24JP5 1023 aa11.68□□□□□ -0.54
RNU4-39P-201ENST00000362455 GPIHBP1Q8IV16 184 aa11.68□□□□□ -0.54
RNU4-39P-201ENST00000362455 C3orf67Q6ZVT6 689 aa11.67□□□□□ -0.54
RNU4-39P-201ENST00000362455 BARGINQ6ZT62 677 aa11.66□□□□□ -0.54
RNU4-39P-201ENST00000362455 MAP3K9P80192 1104 aa11.65□□□□□ -0.54
RNU4-39P-201ENST00000362455 UPF1Q92900 1129 aaKnown RBP eCLIP11.64□□□□□ -0.55
RNU4-39P-201ENST00000362455 NEUROD2Q15784 382 aa11.62□□□□□ -0.55
RNU4-39P-201ENST00000362455 OXER1Q8TDS5 423 aa11.61□□□□□ -0.55
RNU4-39P-201ENST00000362455 EIF2AK3Q9NZJ5 1116 aaKnown RBP11.6□□□□□ -0.55
RNU4-39P-201ENST00000362455 GTF3C3Q9Y5Q9 886 aa11.6□□□□□ -0.55
RNU4-39P-201ENST00000362455 GRXCR2A6NFK2 248 aa11.59□□□□□ -0.55
RNU4-39P-201ENST00000362455 KRI1Q8N9T8 703 aaKnown RBP11.57□□□□□ -0.56
RNU4-39P-201ENST00000362455 NISCHQ9Y2I1 1504 aa11.56□□□□□ -0.56
RNU4-39P-201ENST00000362455 AK7Q96M32 723 aa11.56□□□□□ -0.56
RNU4-39P-201ENST00000362455 GPR37O15354 613 aa11.54□□□□□ -0.56
RNU4-39P-201ENST00000362455 PTGER2P43116 358 aa11.53□□□□□ -0.56
RNU4-39P-201ENST00000362455 MAMSTRQ6ZN01 415 aa11.53□□□□□ -0.56
RNU4-39P-201ENST00000362455 POTEB2H3BUK9 544 aa11.52□□□□□ -0.57
RNU4-39P-201ENST00000362455 TBC1D12O60347 775 aa11.52□□□□□ -0.57
RNU4-39P-201ENST00000362455 OSBPP22059 807 aa11.52□□□□□ -0.57
RNU4-39P-201ENST00000362455 DDX12PQ92771 950 aa11.52□□□□□ -0.57
RNU4-39P-201ENST00000362455 NUTM2FA1L443 756 aa11.51□□□□□ -0.57
RNU4-39P-201ENST00000362455 EVI5O60447 810 aa11.51□□□□□ -0.57
RNU4-39P-201ENST00000362455 POTEJP0CG39 1038 aa11.51□□□□□ -0.57
RNU4-39P-201ENST00000362455 SCUBE2Q9NQ36 999 aa11.51□□□□□ -0.57
RNU4-39P-201ENST00000362455 PTCD2Q8WV60 388 aaKnown RBP11.49□□□□□ -0.57
RNU4-39P-201ENST00000362455 TIMELESSQ9UNS1 1208 aa11.48□□□□□ -0.57
RNU4-39P-201ENST00000362455 ZNF316A6NFI3 1004 aaPredicted RBP11.46□□□□□ -0.57
RNU4-39P-201ENST00000362455 TRIM66O15016 1216 aa11.46□□□□□ -0.57
RNU4-39P-201ENST00000362455 SLC34A2O95436 690 aa11.46□□□□□ -0.57
RNU4-39P-201ENST00000362455 GPBP1L1Q9HC44 474 aaPredicted RBP11.46□□□□□ -0.57
RNU4-39P-201ENST00000362455 PRIM1P49642 420 aaKnown RBP11.44□□□□□ -0.58
RNU4-39P-201ENST00000362455 SLAIN1Q8ND83 568 aa11.44□□□□□ -0.58
RNU4-39P-201ENST00000362455 PDE4DQ08499 809 aa11.43□□□□□ -0.58
RNU4-39P-201ENST00000362455 MINK1Q8N4C8 1332 aaPredicted RBP11.42□□□□□ -0.58
RNU4-39P-201ENST00000362455 FCHSD2O94868 740 aa11.42□□□□□ -0.58
RNU4-39P-201ENST00000362455 ANO8Q9HCE9 1232 aaPredicted RBP11.42□□□□□ -0.58
RNU4-39P-201ENST00000362455 GNPATO15228 680 aa11.41□□□□□ -0.58
RNU4-39P-201ENST00000362455 MAP2K5Q13163 448 aa11.41□□□□□ -0.58
RNU4-39P-201ENST00000362455 HIC1Q14526 733 aa11.4□□□□□ -0.58
RNU4-39P-201ENST00000362455 CCDC102AQ96A19 550 aa11.39□□□□□ -0.59
RNU4-39P-201ENST00000362455 KDM4CQ9H3R0 1056 aa11.39□□□□□ -0.59
RNU4-39P-201ENST00000362455 IRF6O14896 467 aa11.38□□□□□ -0.59
RNU4-39P-201ENST00000362455 FECHP22830 423 aa11.38□□□□□ -0.59
RNU4-39P-201ENST00000362455 PTGDRQ13258 359 aa11.37□□□□□ -0.59
RNU4-39P-201ENST00000362455 LHX8Q68G74 356 aa11.37□□□□□ -0.59
RNU4-39P-201ENST00000362455 PCDHGA4Q9Y5G9 962 aa11.37□□□□□ -0.59
RNU4-39P-201ENST00000362455 PHF14O94880 888 aa11.35□□□□□ -0.59
RNU4-39P-201ENST00000362455 ERICH6Q7L0X2 663 aa11.35□□□□□ -0.59
RNU4-39P-201ENST00000362455 EPAS1Q99814 870 aa11.35□□□□□ -0.59
RNU4-39P-201ENST00000362455 EN1Q05925 392 aaPredicted RBP11.34□□□□□ -0.59
RNU4-39P-201ENST00000362455 DOK7Q18PE1 504 aa11.34□□□□□ -0.59
RNU4-39P-201ENST00000362455 IL27Q8NEV9 243 aa11.34□□□□□ -0.59
RNU4-39P-201ENST00000362455 CDHR5Q9HBB8 845 aa11.33□□□□□ -0.6
RNU4-39P-201ENST00000362455 OTUD5Q96G74 571 aa11.32□□□□□ -0.6
RNU4-39P-201ENST00000362455 DAXXQ9UER7 740 aaPredicted RBP11.32□□□□□ -0.6
RNU4-39P-201ENST00000362455 PCDHGA10Q9Y5H3 936 aa11.32□□□□□ -0.6
RNU4-39P-201ENST00000362455 RIMBP2O15034 1052 aa11.31□□□□□ -0.6
RNU4-39P-201ENST00000362455 SNPHO15079 494 aa11.31□□□□□ -0.6
RNU4-39P-201ENST00000362455 MAP3K7O43318 606 aa11.31□□□□□ -0.6
RNU4-39P-201ENST00000362455 AMHR2Q16671 573 aa11.31□□□□□ -0.6
RNU4-39P-201ENST00000362455 RBM33Q96EV2 1170 aaKnown RBP11.31□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms