RNA–Protein interactions for RNA: ENST00000361654.8

CLIP1-203, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 5 BASIC

Gene CLIP1, Length 5,568 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-203ENST00000361654 HDAC5Q9UQL6 1122 aa14.01□□□□□ -0.17
CLIP1-203ENST00000361654 IRX6P78412 446 aaPredicted RBP14.01□□□□□ -0.17
CLIP1-203ENST00000361654 TPRNQ4KMQ1 711 aa14.01□□□□□ -0.17
CLIP1-203ENST00000361654 CEP164Q9UPV0 1460 aa14□□□□□ -0.17
CLIP1-203ENST00000361654 PDS5BQ9NTI5 1447 aa13.99□□□□□ -0.17
CLIP1-203ENST00000361654 GNL2Q13823 731 aaKnown RBP13.98□□□□□ -0.17
CLIP1-203ENST00000361654 L1TD1Q5T7N2 865 aaKnown RBP13.98□□□□□ -0.17
CLIP1-203ENST00000361654 CEP162Q5TB80 1403 aa13.97□□□□□ -0.17
CLIP1-203ENST00000361654 CARMIL1Q5VZK9 1371 aa13.96□□□□□ -0.17
CLIP1-203ENST00000361654 DNTTIP2Q5QJE6 756 aaKnown RBP13.96□□□□□ -0.18
CLIP1-203ENST00000361654 GTF2E1P29083 439 aaPredicted RBP13.96□□□□□ -0.18
CLIP1-203ENST00000361654 TAF7LQ5H9L4 462 aa13.96□□□□□ -0.18
CLIP1-203ENST00000361654 IPO8O15397 1037 aaKnown RBP13.95□□□□□ -0.18
CLIP1-203ENST00000361654 GORABQ5T7V8 394 aa13.95□□□□□ -0.18
CLIP1-203ENST00000361654 HSP90AB1P08238 724 aaKnown RBP13.95□□□□□ -0.18
CLIP1-203ENST00000361654 NGDNQ8NEJ9 315 aaKnown RBP13.94□□□□□ -0.18
CLIP1-203ENST00000361654 SPAG9O60271 1321 aaKnown RBP13.94□□□□□ -0.18
CLIP1-203ENST00000361654 KIAA1211Q6ZU35 1233 aa13.94□□□□□ -0.18
CLIP1-203ENST00000361654 PLCB2Q00722 1185 aa13.93□□□□□ -0.18
CLIP1-203ENST00000361654 DCAF8L1A6NGE4 600 aa13.93□□□□□ -0.18
CLIP1-203ENST00000361654 CHAF1AQ13111 956 aaPredicted RBP13.92□□□□□ -0.18
CLIP1-203ENST00000361654 CUX2O14529 1486 aa13.92□□□□□ -0.18
CLIP1-203ENST00000361654 STK31Q9BXU1 1019 aa13.92□□□□□ -0.18
CLIP1-203ENST00000361654 RGS3P49796 1198 aa13.91□□□□□ -0.18
CLIP1-203ENST00000361654 TERF2IPQ9NYB0 399 aa13.91□□□□□ -0.18
CLIP1-203ENST00000361654 TNIKQ9UKE5 1360 aa13.9□□□□□ -0.18
CLIP1-203ENST00000361654 KIF3BO15066 747 aa13.89□□□□□ -0.19
CLIP1-203ENST00000361654 KIAA2012Q0VF49 1180 aa13.89□□□□□ -0.19
CLIP1-203ENST00000361654 WASHC2CQ9Y4E1 1318 aa13.88□□□□□ -0.19
CLIP1-203ENST00000361654 EIF3AQ14152 1382 aaKnown RBP13.88□□□□□ -0.19
CLIP1-203ENST00000361654 CHMP3Q9Y3E7 222 aa13.88□□□□□ -0.19
CLIP1-203ENST00000361654 SENP3-EIF4A1A0A087X0R7 540 aa13.88□□□□□ -0.19
CLIP1-203ENST00000361654 MEX3CQ5U5Q3 659 aaKnown RBP13.87□□□□□ -0.19
CLIP1-203ENST00000361654 CCDC34Q96HJ3 373 aa13.87□□□□□ -0.19
CLIP1-203ENST00000361654 TSHZ2Q9NRE2 1034 aa13.87□□□□□ -0.19
CLIP1-203ENST00000361654 FRAT2O75474 233 aaPredicted RBP13.87□□□□□ -0.19
CLIP1-203ENST00000361654 GPATCH3Q96I76 525 aa13.87□□□□□ -0.19
CLIP1-203ENST00000361654 AMPHP49418 695 aa13.86□□□□□ -0.19
CLIP1-203ENST00000361654 PKD2Q13563 968 aa13.86□□□□□ -0.19
CLIP1-203ENST00000361654 U2AF1L5P0DN76 240 aaPredicted RBP13.86□□□□□ -0.19
CLIP1-203ENST00000361654 U2AF1Q01081 240 aaKnown RBP eCLIP13.86□□□□□ -0.19
CLIP1-203ENST00000361654 RSPH4AQ5TD94 716 aa13.86□□□□□ -0.19
CLIP1-203ENST00000361654 MSH5O43196 834 aa13.85□□□□□ -0.19
CLIP1-203ENST00000361654 HTATSF1O43719 755 aaKnown RBP13.85□□□□□ -0.19
CLIP1-203ENST00000361654 EVA1CP58658 441 aa13.85□□□□□ -0.19
CLIP1-203ENST00000361654 HSCBQ8IWL3 235 aa13.85□□□□□ -0.19
CLIP1-203ENST00000361654 TIMELESSQ9UNS1 1208 aa13.85□□□□□ -0.19
CLIP1-203ENST00000361654 ANKRD30AQ9BXX3 1397 aa13.84□□□□□ -0.19
CLIP1-203ENST00000361654 BAZ1AQ9NRL2 1556 aaPredicted RBP13.83□□□□□ -0.19
CLIP1-203ENST00000361654 PRM3Q9NNZ6 103 aa13.83□□□□□ -0.2
CLIP1-203ENST00000361654 LMOD3Q0VAK6 560 aa13.83□□□□□ -0.2
CLIP1-203ENST00000361654 RBM19Q9Y4C8 960 aaKnown RBP13.82□□□□□ -0.2
CLIP1-203ENST00000361654 SIN3AQ96ST3 1273 aa13.82□□□□□ -0.2
CLIP1-203ENST00000361654 KTN1Q86UP2 1357 aaKnown RBP13.82□□□□□ -0.2
CLIP1-203ENST00000361654 HMMRO75330 724 aa13.8□□□□□ -0.2
CLIP1-203ENST00000361654 NUP155O75694 1391 aa13.8□□□□□ -0.2
CLIP1-203ENST00000361654 SOGA1O94964 1423 aa13.8□□□□□ -0.2
CLIP1-203ENST00000361654 APBB1O00213 710 aa13.79□□□□□ -0.2
CLIP1-203ENST00000361654 PPP4R2Q9NY27 417 aa13.78□□□□□ -0.2
CLIP1-203ENST00000361654 ARHGAP35Q9NRY4 1499 aa13.77□□□□□ -0.2
CLIP1-203ENST00000361654 CYB5RLQ6IPT4 315 aa13.77□□□□□ -0.21
CLIP1-203ENST00000361654 OSCARQ8IYS5 282 aa13.77□□□□□ -0.21
CLIP1-203ENST00000361654 KRI1Q8N9T8 703 aaKnown RBP13.77□□□□□ -0.21
CLIP1-203ENST00000361654 LTV1Q96GA3 475 aaPredicted RBP13.77□□□□□ -0.21
CLIP1-203ENST00000361654 PHF23Q9BUL5 403 aaPredicted RBP13.77□□□□□ -0.21
CLIP1-203ENST00000361654 ROCK2O75116 1388 aaKnown RBP13.77□□□□□ -0.21
CLIP1-203ENST00000361654 MARCH6O60337 910 aa13.77□□□□□ -0.21
CLIP1-203ENST00000361654 RASSF8Q8NHQ8 419 aa13.76□□□□□ -0.21
CLIP1-203ENST00000361654 DRC7Q8IY82 874 aa13.76□□□□□ -0.21
CLIP1-203ENST00000361654 FMN1Q68DA7 1419 aa13.76□□□□□ -0.21
CLIP1-203ENST00000361654 CTDP1Q9Y5B0 961 aaPredicted RBP13.75□□□□□ -0.21
CLIP1-203ENST00000361654 CECR2Q9BXF3 1484 aa13.75□□□□□ -0.21
CLIP1-203ENST00000361654 C1orf141Q5JVX7 400 aa13.75□□□□□ -0.21
CLIP1-203ENST00000361654 ERICH6BQ5W0A0 696 aa13.75□□□□□ -0.21
CLIP1-203ENST00000361654 TDRD9Q8NDG6 1382 aaKnown RBP13.75□□□□□ -0.21
CLIP1-203ENST00000361654 DEKP35659 375 aaKnown RBP13.75□□□□□ -0.21
CLIP1-203ENST00000361654 RWDD1Q9H446 243 aaPredicted RBP13.74□□□□□ -0.21
CLIP1-203ENST00000361654 VPS53Q5VIR6 699 aa13.74□□□□□ -0.21
CLIP1-203ENST00000361654 NOL10Q9BSC4 688 aaKnown RBP13.74□□□□□ -0.21
CLIP1-203ENST00000361654 RTN4Q9NQC3 1192 aaKnown RBP13.74□□□□□ -0.21
CLIP1-203ENST00000361654 TOMM22Q9NS69 142 aa13.74□□□□□ -0.21
CLIP1-203ENST00000361654 TRIM34Q9BYJ4 488 aa13.74□□□□□ -0.21
CLIP1-203ENST00000361654 ITPRIPQ8IWB1 547 aa13.74□□□□□ -0.21
CLIP1-203ENST00000361654 TPM4P67936 248 aa13.73□□□□□ -0.21
CLIP1-203ENST00000361654 AMOTL1Q8IY63 956 aa13.72□□□□□ -0.21
CLIP1-203ENST00000361654 RALBP1Q15311 655 aa13.72□□□□□ -0.21
CLIP1-203ENST00000361654 CEP89Q96ST8 783 aa13.72□□□□□ -0.21
CLIP1-203ENST00000361654 NOC3LQ8WTT2 800 aaKnown RBP13.72□□□□□ -0.21
CLIP1-203ENST00000361654 NUTM2FA1L443 756 aa13.72□□□□□ -0.21
CLIP1-203ENST00000361654 HSP90B1P14625 803 aaKnown RBP13.71□□□□□ -0.21
CLIP1-203ENST00000361654 KIF3AQ9Y496 699 aa13.71□□□□□ -0.21
CLIP1-203ENST00000361654 TTC5Q8N0Z6 440 aa13.7□□□□□ -0.22
CLIP1-203ENST00000361654 JPH4Q96JJ6 628 aa13.7□□□□□ -0.22
CLIP1-203ENST00000361654 VGFO15240 615 aaPredicted RBP13.7□□□□□ -0.22
CLIP1-203ENST00000361654 HNRNPMP52272 730 aaKnown RBP eCLIP13.7□□□□□ -0.22
CLIP1-203ENST00000361654 CHMP4CQ96CF2 233 aa13.7□□□□□ -0.22
CLIP1-203ENST00000361654 CWC22Q9HCG8 908 aaKnown RBP13.7□□□□□ -0.22
CLIP1-203ENST00000361654 FOXD1Q16676 465 aa13.69□□□□□ -0.22
CLIP1-203ENST00000361654 SLC4A10Q6U841 1118 aa13.69□□□□□ -0.22
CLIP1-203ENST00000361654 PTMSP20962 102 aa13.69□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 7.4 ms