RNA–Protein interactions for RNA: ENST00000356083.7

COL27A1-201, Transcript of collagen type XXVII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL27A1, Length 7,790 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL27A1-201ENST00000356083 GORABQ5T7V8 394 aa21.97■■□□□ 1.11
COL27A1-201ENST00000356083 CEP89Q96ST8 783 aa21.96■■□□□ 1.11
COL27A1-201ENST00000356083 SRPK2P78362 688 aaKnown RBP21.95■■□□□ 1.1
COL27A1-201ENST00000356083 MIER1Q8N108 512 aa21.93■■□□□ 1.1
COL27A1-201ENST00000356083 FRAT2O75474 233 aaPredicted RBP21.92■■□□□ 1.1
COL27A1-201ENST00000356083 CDCA8Q53HL2 280 aa21.92■■□□□ 1.1
COL27A1-201ENST00000356083 CARD11Q9BXL7 1154 aa21.92■■□□□ 1.1
COL27A1-201ENST00000356083 PATL2C9JE40 543 aaKnown RBP21.91■■□□□ 1.1
COL27A1-201ENST00000356083 STK26Q9P289 416 aa21.91■■□□□ 1.1
COL27A1-201ENST00000356083 PES1O00541 588 aaKnown RBP21.91■■□□□ 1.1
COL27A1-201ENST00000356083 MARCH6O60337 910 aa21.9■■□□□ 1.1
COL27A1-201ENST00000356083 TNNT3P45378 269 aaPredicted RBP21.9■■□□□ 1.1
COL27A1-201ENST00000356083 B4GALNT3Q6L9W6 998 aa21.9■■□□□ 1.1
COL27A1-201ENST00000356083 GZF1Q9H116 711 aaPredicted RBP21.89■■□□□ 1.09
COL27A1-201ENST00000356083 DCAF8L1A6NGE4 600 aa21.88■■□□□ 1.09
COL27A1-201ENST00000356083 MSH5O43196 834 aa21.88■■□□□ 1.09
COL27A1-201ENST00000356083 RAD21O60216 631 aa21.86■■□□□ 1.09
COL27A1-201ENST00000356083 PLEKHD1A6NEE1 506 aa21.86■■□□□ 1.09
COL27A1-201ENST00000356083 CHMP4BQ9H444 224 aaKnown RBP21.84■■□□□ 1.09
COL27A1-201ENST00000356083 GTF2E1P29083 439 aaPredicted RBP21.84■■□□□ 1.09
COL27A1-201ENST00000356083 GOLGA6L1Q8N7Z2 621 aa21.83■■□□□ 1.09
COL27A1-201ENST00000356083 TOMM22Q9NS69 142 aa21.82■■□□□ 1.08
COL27A1-201ENST00000356083 KLHL34Q8N239 644 aa21.8■■□□□ 1.08
COL27A1-201ENST00000356083 TRIM6-TRIM34B2RNG4 842 aa21.78■■□□□ 1.08
COL27A1-201ENST00000356083 TCEAL9Q9UHQ7 104 aa21.77■■□□□ 1.08
COL27A1-201ENST00000356083 PHF23Q9BUL5 403 aaPredicted RBP21.77■■□□□ 1.07
COL27A1-201ENST00000356083 NOL8Q76FK4 1167 aaKnown RBP21.76■■□□□ 1.07
COL27A1-201ENST00000356083 TPM4P67936 248 aa21.75■■□□□ 1.07
COL27A1-201ENST00000356083 MS4A1P11836 297 aa21.74■■□□□ 1.07
COL27A1-201ENST00000356083 NOP58Q9Y2X3 529 aaKnown RBP21.72■■□□□ 1.07
COL27A1-201ENST00000356083 SAMD1Q6SPF0 538 aaPredicted RBP21.72■■□□□ 1.07
COL27A1-201ENST00000356083 CFDP1Q9UEE9 299 aaPredicted RBP21.7■■□□□ 1.06
COL27A1-201ENST00000356083 CWC22Q9HCG8 908 aaKnown RBP21.7■■□□□ 1.06
COL27A1-201ENST00000356083 TPD52L1Q16890 204 aaPredicted RBP21.69■■□□□ 1.06
COL27A1-201ENST00000356083 FOXD4L5Q5VV16 416 aaPredicted RBP21.67■■□□□ 1.06
COL27A1-201ENST00000356083 FOXD4L4Q8WXT5 416 aaPredicted RBP21.67■■□□□ 1.06
COL27A1-201ENST00000356083 CTDP1Q9Y5B0 961 aaPredicted RBP21.67■■□□□ 1.06
COL27A1-201ENST00000356083 MORC1Q86VD1 984 aa21.67■■□□□ 1.06
COL27A1-201ENST00000356083 CCAR2Q8N163 923 aaKnown RBP21.66■■□□□ 1.06
COL27A1-201ENST00000356083 SLC4A10Q6U841 1118 aa21.66■■□□□ 1.06
COL27A1-201ENST00000356083 HDGFP51858 240 aaKnown RBP21.65■■□□□ 1.06
COL27A1-201ENST00000356083 FBXW7Q969H0 707 aa21.65■■□□□ 1.06
COL27A1-201ENST00000356083 FOXD4L1Q9NU39 408 aa21.65■■□□□ 1.06
COL27A1-201ENST00000356083 ERCC6Q03468 1493 aa21.65■■□□□ 1.06
COL27A1-201ENST00000356083 LTV1Q96GA3 475 aaPredicted RBP21.65■■□□□ 1.06
COL27A1-201ENST00000356083 GPATCH3Q96I76 525 aa21.65■■□□□ 1.06
COL27A1-201ENST00000356083 CCDC34Q96HJ3 373 aa21.64■■□□□ 1.06
COL27A1-201ENST00000356083 TRIM34Q9BYJ4 488 aa21.63■■□□□ 1.05
COL27A1-201ENST00000356083 TPM3P06753 285 aa21.63■■□□□ 1.05
COL27A1-201ENST00000356083 NUTM2DQ5VT03 806 aaPredicted RBP21.62■■□□□ 1.05
COL27A1-201ENST00000356083 HTATSF1O43719 755 aaKnown RBP21.62■■□□□ 1.05
COL27A1-201ENST00000356083 NUTM2FA1L443 756 aa21.62■■□□□ 1.05
COL27A1-201ENST00000356083 SLKQ9H2G2 1235 aaPredicted RBP21.62■■□□□ 1.05
COL27A1-201ENST00000356083 ITPRIPQ8IWB1 547 aa21.62■■□□□ 1.05
COL27A1-201ENST00000356083 SF3A1Q15459 793 aaKnown RBP21.61■■□□□ 1.05
COL27A1-201ENST00000356083 DCAF11Q8TEB1 546 aa21.6■■□□□ 1.05
COL27A1-201ENST00000356083 FOXD4L6Q3SYB3 417 aaPredicted RBP21.6■■□□□ 1.05
COL27A1-201ENST00000356083 FOXD4L3Q6VB84 417 aaPredicted RBP21.6■■□□□ 1.05
COL27A1-201ENST00000356083 GGT6Q6P531 493 aa21.59■■□□□ 1.05
COL27A1-201ENST00000356083 UTP3Q9NQZ2 479 aaKnown RBP eCLIP21.59■■□□□ 1.053e-13■■■■■ 105.8
COL27A1-201ENST00000356083 TSR1Q2NL82 804 aaKnown RBP21.58■■□□□ 1.04
COL27A1-201ENST00000356083 EVA1CP58658 441 aa21.55■■□□□ 1.04
COL27A1-201ENST00000356083 NGEFQ8N5V2 710 aa21.55■■□□□ 1.04
COL27A1-201ENST00000356083 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP21.55■■□□□ 1.04
COL27A1-201ENST00000356083 TMF1P82094 1093 aa21.54■■□□□ 1.04
COL27A1-201ENST00000356083 MEX3CQ5U5Q3 659 aaKnown RBP21.54■■□□□ 1.04
COL27A1-201ENST00000356083 GBP4Q96PP9 640 aa21.54■■□□□ 1.04
COL27A1-201ENST00000356083 SYAP1Q96A49 352 aaPredicted RBP21.53■■□□□ 1.04
COL27A1-201ENST00000356083 PCMTD1Q96MG8 357 aaPredicted RBP21.53■■□□□ 1.04
COL27A1-201ENST00000356083 HDGFL2Q7Z4V5 671 aaPredicted RBP21.51■■□□□ 1.03
COL27A1-201ENST00000356083 SPAG9O60271 1321 aaKnown RBP21.51■■□□□ 1.03
COL27A1-201ENST00000356083 PPP4R2Q9NY27 417 aa21.51■■□□□ 1.03
COL27A1-201ENST00000356083 ZCCHC6Q5VYS8 1495 aaKnown RBP21.51■■□□□ 1.03
COL27A1-201ENST00000356083 U2AF1L5P0DN76 240 aaPredicted RBP21.5■■□□□ 1.03
COL27A1-201ENST00000356083 PTMSP20962 102 aa21.5■■□□□ 1.03
COL27A1-201ENST00000356083 U2AF1Q01081 240 aaKnown RBP eCLIP21.5■■□□□ 1.03
COL27A1-201ENST00000356083 SIN3AQ96ST3 1273 aa21.5■■□□□ 1.03
COL27A1-201ENST00000356083 SETQ01105 290 aaPredicted RBP21.5■■□□□ 1.03
COL27A1-201ENST00000356083 MFAP1P55081 439 aaKnown RBP21.5■■□□□ 1.03
COL27A1-201ENST00000356083 AKAP17AQ02040 695 aaKnown RBP21.5■■□□□ 1.03
COL27A1-201ENST00000356083 SYTL4Q96C24 671 aaPredicted RBP21.49■■□□□ 1.03
COL27A1-201ENST00000356083 STK31Q9BXU1 1019 aa21.49■■□□□ 1.03
COL27A1-201ENST00000356083 IPO8O15397 1037 aaKnown RBP21.49■■□□□ 1.03
COL27A1-201ENST00000356083 H3BQV1 296 aa21.48■■□□□ 1.03
COL27A1-201ENST00000356083 IFFO2Q5TF58 517 aa21.48■■□□□ 1.03
COL27A1-201ENST00000356083 PAF1Q8N7H5 531 aa21.48■■□□□ 1.03
COL27A1-201ENST00000356083 KANK1Q14678 1352 aa21.47■■□□□ 1.03
COL27A1-201ENST00000356083 DHX16O60231 1041 aaKnown RBP21.47■■□□□ 1.03
COL27A1-201ENST00000356083 CFAP44Q96MT7 982 aa21.47■■□□□ 1.03
COL27A1-201ENST00000356083 RRP12Q5JTH9 1297 aaKnown RBP21.46■■□□□ 1.03
COL27A1-201ENST00000356083 FOXD1Q16676 465 aa21.45■■□□□ 1.02
COL27A1-201ENST00000356083 NGDNQ8NEJ9 315 aaKnown RBP21.44■■□□□ 1.02
COL27A1-201ENST00000356083 DEKP35659 375 aaKnown RBP21.43■■□□□ 1.02
COL27A1-201ENST00000356083 TPM2P07951 284 aa21.43■■□□□ 1.02
COL27A1-201ENST00000356083 CCDC43Q96MW1 224 aaKnown RBP21.43■■□□□ 1.02
COL27A1-201ENST00000356083 USP35Q9P2H5 1018 aa21.43■■□□□ 1.02
COL27A1-201ENST00000356083 RSF1Q96T23 1441 aaPredicted RBP21.43■■□□□ 1.02
COL27A1-201ENST00000356083 MCTP1Q6DN14 999 aa21.43■■□□□ 1.02
COL27A1-201ENST00000356083 KIF16BQ96L93 1317 aa21.43■■□□□ 1.02
COL27A1-201ENST00000356083 VSIG10Q8N0Z9 540 aa21.42■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms