RNA–Protein interactions for RNA: ENST00000338585.6

MCF2-201, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MCF2, Length 2,826 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-201ENST00000338585 KDM5BQ9UGL1 1544 aa6.21□□□□□ -1.42
MCF2-201ENST00000338585 GPATCH8Q9UKJ3 1502 aaKnown RBP6.21□□□□□ -1.42
MCF2-201ENST00000338585 TCOF1Q13428 1488 aaKnown RBP6.21□□□□□ -1.42
MCF2-201ENST00000338585 ABCC10Q5T3U5 1492 aa6.21□□□□□ -1.42
MCF2-201ENST00000338585 MIA2Q96PC5 1412 aa6.21□□□□□ -1.42
MCF2-201ENST00000338585 KCNH8Q96L42 1107 aa6.19□□□□□ -1.42
MCF2-201ENST00000338585 CFDP1Q9UEE9 299 aaPredicted RBP6.19□□□□□ -1.42
MCF2-201ENST00000338585 ZNF777Q9ULD5 760 aaPredicted RBP6.19□□□□□ -1.42
MCF2-201ENST00000338585 RAB3GAP2Q9H2M9 1393 aa6.19□□□□□ -1.42
MCF2-201ENST00000338585 CDC42BPAQ5VT25 1732 aa6.19□□□□□ -1.42
MCF2-201ENST00000338585 ITSN2Q9NZM3 1697 aa6.19□□□□□ -1.42
MCF2-201ENST00000338585 TTC37Q6PGP7 1564 aa6.19□□□□□ -1.42
MCF2-201ENST00000338585 CAMSAP2Q08AD1 1489 aa6.18□□□□□ -1.42
MCF2-201ENST00000338585 CHIC2Q9UKJ5 165 aa6.18□□□□□ -1.42
MCF2-201ENST00000338585 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP6.18□□□□□ -1.42
MCF2-201ENST00000338585 SP7Q8TDD2 431 aaPredicted RBP6.18□□□□□ -1.42
MCF2-201ENST00000338585 SETD5Q9C0A6 1442 aa6.18□□□□□ -1.42
MCF2-201ENST00000338585 DHX57Q6P158 1386 aaKnown RBP6.17□□□□□ -1.42
MCF2-201ENST00000338585 ABCC5O15440 1437 aa6.17□□□□□ -1.42
MCF2-201ENST00000338585 DAPK1P53355 1430 aa6.17□□□□□ -1.42
MCF2-201ENST00000338585 RRP7BPQ9NSQ0 103 aa6.17□□□□□ -1.42
MCF2-201ENST00000338585 RIMBP3CA6NJZ7 1639 aa6.16□□□□□ -1.42
MCF2-201ENST00000338585 RIMBP3BA6NNM3 1639 aa6.16□□□□□ -1.42
MCF2-201ENST00000338585 DNMT1P26358 1616 aaKnown RBP6.16□□□□□ -1.42
MCF2-201ENST00000338585 RIMBP3Q9UFD9 1639 aa6.16□□□□□ -1.42
MCF2-201ENST00000338585 CDC42BPBQ9Y5S2 1711 aa6.16□□□□□ -1.42
MCF2-201ENST00000338585 ZEB1P37275 1124 aaPredicted RBP6.16□□□□□ -1.42
MCF2-201ENST00000338585 HFM1A2PYH4 1435 aa6.16□□□□□ -1.42
MCF2-201ENST00000338585 NAIPQ13075 1403 aa6.16□□□□□ -1.42
MCF2-201ENST00000338585 ASXL2Q76L83 1435 aa6.16□□□□□ -1.42
MCF2-201ENST00000338585 PREX2Q70Z35 1606 aa6.16□□□□□ -1.42
MCF2-201ENST00000338585 WDR7Q9Y4E6 1490 aa6.16□□□□□ -1.42
MCF2-201ENST00000338585 CYB5RLQ6IPT4 315 aa6.16□□□□□ -1.42
MCF2-201ENST00000338585 SAMD9LQ8IVG5 1584 aa6.15□□□□□ -1.43
MCF2-201ENST00000338585 ARHGAP5Q13017 1502 aa6.14□□□□□ -1.43
MCF2-201ENST00000338585 HNRNPMP52272 730 aaKnown RBP eCLIP6.14□□□□□ -1.43
MCF2-201ENST00000338585 MYO5CQ9NQX4 1742 aa6.14□□□□□ -1.43
MCF2-201ENST00000338585 NPM1P06748 294 aaKnown RBP eCLIP6.14□□□□□ -1.43
MCF2-201ENST00000338585 KDM6BO15054 1643 aa6.14□□□□□ -1.43
MCF2-201ENST00000338585 PLCH2O75038 1416 aa6.13□□□□□ -1.43
MCF2-201ENST00000338585 AKNAQ7Z591 1439 aa6.13□□□□□ -1.43
MCF2-201ENST00000338585 MBD5Q9P267 1494 aa6.13□□□□□ -1.43
MCF2-201ENST00000338585 CROCC2H7BZ55 1655 aa6.13□□□□□ -1.43
MCF2-201ENST00000338585 GCC2Q8IWJ2 1684 aa6.13□□□□□ -1.43
MCF2-201ENST00000338585 SYCP2Q9BX26 1530 aa6.12□□□□□ -1.43
MCF2-201ENST00000338585 ROCK1Q13464 1354 aa6.12□□□□□ -1.43
MCF2-201ENST00000338585 MAPKBP1O60336 1514 aa6.12□□□□□ -1.43
MCF2-201ENST00000338585 ARHGEF12Q9NZN5 1544 aa6.11□□□□□ -1.43
MCF2-201ENST00000338585 ABCA9Q8IUA7 1624 aa6.11□□□□□ -1.43
MCF2-201ENST00000338585 NCOA1Q15788 1441 aa6.11□□□□□ -1.43
MCF2-201ENST00000338585 C9orf84Q5VXU9 1444 aa6.11□□□□□ -1.43
MCF2-201ENST00000338585 ARHGEF5Q12774 1597 aa6.11□□□□□ -1.43
MCF2-201ENST00000338585 EFCAB2Q5VUJ9 269 aa6.11□□□□□ -1.43
MCF2-201ENST00000338585 CCDC141Q6ZP82 1450 aa6.11□□□□□ -1.43
MCF2-201ENST00000338585 ADGRL2O95490 1459 aa6.1□□□□□ -1.43
MCF2-201ENST00000338585 ADGBQ8N7X0 1667 aa6.1□□□□□ -1.43
MCF2-201ENST00000338585 SHANK2Q9UPX8 1470 aa6.1□□□□□ -1.43
MCF2-201ENST00000338585 ABCC1P33527 1531 aa6.09□□□□□ -1.43
MCF2-201ENST00000338585 ANKRD30AQ9BXX3 1397 aa6.09□□□□□ -1.43
MCF2-201ENST00000338585 TSPY4P0CV99 314 aa6.09□□□□□ -1.43
MCF2-201ENST00000338585 TSPY10P0CW01 314 aa6.09□□□□□ -1.43
MCF2-201ENST00000338585 FANCAO15360 1455 aa6.09□□□□□ -1.43
MCF2-201ENST00000338585 KIAA1107Q9UPP5 1409 aa6.09□□□□□ -1.43
MCF2-201ENST00000338585 TRAPPC8Q9Y2L5 1435 aa6.09□□□□□ -1.43
MCF2-201ENST00000338585 CLSPNQ9HAW4 1339 aa6.09□□□□□ -1.43
MCF2-201ENST00000338585 TRIM52Q96A61 297 aa6.09□□□□□ -1.43
MCF2-201ENST00000338585 ARAP3Q8WWN8 1544 aa6.09□□□□□ -1.44
MCF2-201ENST00000338585 PLEKHH2Q8IVE3 1493 aa6.09□□□□□ -1.44
MCF2-201ENST00000338585 DENND4BO75064 1496 aaPredicted RBP6.08□□□□□ -1.44
MCF2-201ENST00000338585 CD109Q6YHK3 1445 aa6.08□□□□□ -1.44
MCF2-201ENST00000338585 KIF15Q9NS87 1388 aa6.08□□□□□ -1.44
MCF2-201ENST00000338585 AFAP1Q8N556 730 aa6.07□□□□□ -1.44
MCF2-201ENST00000338585 SIN3AQ96ST3 1273 aa6.07□□□□□ -1.44
MCF2-201ENST00000338585 ANKRD50Q9ULJ7 1429 aa6.07□□□□□ -1.44
MCF2-201ENST00000338585 RSPH4AQ5TD94 716 aa6.07□□□□□ -1.44
MCF2-201ENST00000338585 MAST1Q9Y2H9 1570 aa6.06□□□□□ -1.44
MCF2-201ENST00000338585 ADGRL1O94910 1474 aa6.06□□□□□ -1.44
MCF2-201ENST00000338585 NEUROD1Q13562 356 aa6.06□□□□□ -1.44
MCF2-201ENST00000338585 SCAPERQ9BY12 1400 aa6.06□□□□□ -1.44
MCF2-201ENST00000338585 MPHOSPH9Q99550 1183 aa6.06□□□□□ -1.44
MCF2-201ENST00000338585 RNF216Q9NWF9 866 aaPredicted RBP6.06□□□□□ -1.44
MCF2-201ENST00000338585 PZPP20742 1482 aa6.05□□□□□ -1.44
MCF2-201ENST00000338585 SPAG9O60271 1321 aaKnown RBP6.05□□□□□ -1.44
MCF2-201ENST00000338585 FAM69CQ0P6D2 419 aa6.04□□□□□ -1.44
MCF2-201ENST00000338585 PLXNC1O60486 1568 aa6.04□□□□□ -1.44
MCF2-201ENST00000338585 DIP2BQ9P265 1576 aa6.04□□□□□ -1.44
MCF2-201ENST00000338585 MAP3K4Q9Y6R4 1608 aa6.04□□□□□ -1.44
MCF2-201ENST00000338585 ZFYVE16Q7Z3T8 1539 aa6.04□□□□□ -1.44
MCF2-201ENST00000338585 SLC4A1APQ9BWU0 796 aaKnown RBP6.04□□□□□ -1.44
MCF2-201ENST00000338585 GLI2P10070 1586 aa6.03□□□□□ -1.44
MCF2-201ENST00000338585 NUP155O75694 1391 aa6.03□□□□□ -1.44
MCF2-201ENST00000338585 INO80Q9ULG1 1556 aaPredicted RBP6.03□□□□□ -1.44
MCF2-201ENST00000338585 ATP7AQ04656 1500 aa6.03□□□□□ -1.44
MCF2-201ENST00000338585 DUOX2Q9NRD8 1548 aa6.02□□□□□ -1.45
MCF2-201ENST00000338585 CFAP74Q9C0B2 1584 aa6.02□□□□□ -1.45
MCF2-201ENST00000338585 RTEL1-TNFRSF6BF6WH68 1400 aa6.02□□□□□ -1.45
MCF2-201ENST00000338585 MYT1LQ9UL68 1186 aa6.02□□□□□ -1.45
MCF2-201ENST00000338585 POGZQ7Z3K3 1410 aa6.02□□□□□ -1.45
MCF2-201ENST00000338585 RAPGEF3O95398 923 aa6.02□□□□□ -1.45
MCF2-201ENST00000338585 DSG3P32926 999 aa6.02□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms