RNA–Protein interactions for RNA: ENST00000334414.10

PTPRB-202, Transcript of protein tyrosine phosphatase, receptor type B, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene PTPRB, Length 12,316 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRB-202ENST00000334414 PDE3BQ13370 1112 aa6.91□□□□□ -1.3
PTPRB-202ENST00000334414 RGS3P49796 1198 aa6.91□□□□□ -1.3
PTPRB-202ENST00000334414 KIF27Q86VH2 1401 aa6.91□□□□□ -1.3
PTPRB-202ENST00000334414 TPM2P07951 284 aa6.91□□□□□ -1.3
PTPRB-202ENST00000334414 ABCC9O60706 1549 aa6.9□□□□□ -1.3
PTPRB-202ENST00000334414 KCNJ4P48050 445 aa6.9□□□□□ -1.3
PTPRB-202ENST00000334414 ARGLU1Q9NWB6 273 aaPredicted RBP6.9□□□□□ -1.3
PTPRB-202ENST00000334414 CCNB3Q8WWL7 1395 aa6.9□□□□□ -1.3
PTPRB-202ENST00000334414 AAMPQ13685 434 aa6.9□□□□□ -1.31
PTPRB-202ENST00000334414 SALL2Q9Y467 1007 aaPredicted RBP6.9□□□□□ -1.31
PTPRB-202ENST00000334414 CDR1P51861 262 aa6.9□□□□□ -1.31
PTPRB-202ENST00000334414 ZNF771Q7L3S4 317 aaPredicted RBP6.9□□□□□ -1.31
PTPRB-202ENST00000334414 NACADO15069 1562 aa6.89□□□□□ -1.31
PTPRB-202ENST00000334414 MYO15BQ96JP2 1530 aa6.89□□□□□ -1.31
PTPRB-202ENST00000334414 ST18O60284 1047 aa6.89□□□□□ -1.31
PTPRB-202ENST00000334414 CARD11Q9BXL7 1154 aa6.89□□□□□ -1.31
PTPRB-202ENST00000334414 SETD5Q9C0A6 1442 aa6.89□□□□□ -1.31
PTPRB-202ENST00000334414 KIAA1211Q6ZU35 1233 aa6.89□□□□□ -1.31
PTPRB-202ENST00000334414 TSPYL1Q9H0U9 437 aa6.89□□□□□ -1.31
PTPRB-202ENST00000334414 GPATCH3Q96I76 525 aa6.88□□□□□ -1.31
PTPRB-202ENST00000334414 HMMRO75330 724 aa6.88□□□□□ -1.31
PTPRB-202ENST00000334414 KANK1Q14678 1352 aa6.88□□□□□ -1.31
PTPRB-202ENST00000334414 OS9Q13438 667 aaPredicted RBP6.88□□□□□ -1.31
PTPRB-202ENST00000334414 WRNQ14191 1432 aaPredicted RBP eCLIP6.88□□□□□ -1.31
PTPRB-202ENST00000334414 VSIG10Q8N0Z9 540 aa6.87□□□□□ -1.31
PTPRB-202ENST00000334414 VPS8Q8N3P4 1428 aa6.87□□□□□ -1.31
PTPRB-202ENST00000334414 TMF1P82094 1093 aa6.87□□□□□ -1.31
PTPRB-202ENST00000334414 ISY1Q9ULR0 285 aaKnown RBP6.87□□□□□ -1.31
PTPRB-202ENST00000334414 TPM1P09493 284 aa6.87□□□□□ -1.31
PTPRB-202ENST00000334414 DCTN1Q14203 1278 aa6.86□□□□□ -1.31
PTPRB-202ENST00000334414 APPP05067 770 aa6.86□□□□□ -1.31
PTPRB-202ENST00000334414 CCP110O43303 1012 aa6.86□□□□□ -1.31
PTPRB-202ENST00000334414 CENPQQ7L2Z9 268 aaPredicted RBP6.86□□□□□ -1.31
PTPRB-202ENST00000334414 AK7Q96M32 723 aa6.86□□□□□ -1.31
PTPRB-202ENST00000334414 TSHZ2Q9NRE2 1034 aa6.86□□□□□ -1.31
PTPRB-202ENST00000334414 PKNOX2Q96KN3 472 aa6.86□□□□□ -1.31
PTPRB-202ENST00000334414 CAVIN1Q6NZI2 390 aaKnown RBP6.85□□□□□ -1.31
PTPRB-202ENST00000334414 NGEFQ8N5V2 710 aa6.85□□□□□ -1.31
PTPRB-202ENST00000334414 DIAPH3Q9NSV4 1193 aa6.85□□□□□ -1.31
PTPRB-202ENST00000334414 AMER1Q5JTC6 1135 aaPredicted RBP6.85□□□□□ -1.31
PTPRB-202ENST00000334414 BAZ1BQ9UIG0 1483 aaKnown RBP6.85□□□□□ -1.31
PTPRB-202ENST00000334414 TSR1Q2NL82 804 aaKnown RBP6.84□□□□□ -1.31
PTPRB-202ENST00000334414 FAM161AQ3B820 660 aa6.84□□□□□ -1.31
PTPRB-202ENST00000334414 ERCC4Q92889 916 aaPredicted RBP6.84□□□□□ -1.31
PTPRB-202ENST00000334414 CCDC39Q9UFE4 941 aa6.84□□□□□ -1.31
PTPRB-202ENST00000334414 RCAN3Q9UKA8 241 aa6.84□□□□□ -1.31
PTPRB-202ENST00000334414 FRAT1Q92837 279 aaPredicted RBP6.84□□□□□ -1.31
PTPRB-202ENST00000334414 LETM1O95202 739 aaPredicted RBP6.84□□□□□ -1.31
PTPRB-202ENST00000334414 ZBTB4Q9P1Z0 1013 aaPredicted RBP6.84□□□□□ -1.31
PTPRB-202ENST00000334414 B4GALNT3Q6L9W6 998 aa6.84□□□□□ -1.32
PTPRB-202ENST00000334414 HMGN5P82970 282 aaKnown RBP6.83□□□□□ -1.32
PTPRB-202ENST00000334414 KIF15Q9NS87 1388 aa6.83□□□□□ -1.32
PTPRB-202ENST00000334414 HSP90B1P14625 803 aaKnown RBP6.83□□□□□ -1.32
PTPRB-202ENST00000334414 FBLN2P98095 1184 aa6.83□□□□□ -1.32
PTPRB-202ENST00000334414 HSP90B2PQ58FF3 399 aa6.83□□□□□ -1.32
PTPRB-202ENST00000334414 ROCK1Q13464 1354 aa6.83□□□□□ -1.32
PTPRB-202ENST00000334414 HOOK1Q9UJC3 728 aaKnown RBP6.83□□□□□ -1.32
PTPRB-202ENST00000334414 USP8P40818 1118 aa6.83□□□□□ -1.32
PTPRB-202ENST00000334414 CHGAP10645 457 aaKnown RBP6.83□□□□□ -1.32
PTPRB-202ENST00000334414 FAM43AQ8N2R8 423 aa6.83□□□□□ -1.32
PTPRB-202ENST00000334414 NPM1P06748 294 aaKnown RBP eCLIP6.82□□□□□ -1.32
PTPRB-202ENST00000334414 P3H3Q8IVL6 736 aa6.82□□□□□ -1.32
PTPRB-202ENST00000334414 RDXP35241 583 aaKnown RBP6.82□□□□□ -1.32
PTPRB-202ENST00000334414 FMN1Q68DA7 1419 aa6.82□□□□□ -1.32
PTPRB-202ENST00000334414 GOLGA2Q08379 1002 aa6.82□□□□□ -1.32
PTPRB-202ENST00000334414 GOLGA6L19H0YKK7 550 aa6.82□□□□□ -1.32
PTPRB-202ENST00000334414 KIF7Q2M1P5 1343 aa6.82□□□□□ -1.32
PTPRB-202ENST00000334414 ZBED9Q6R2W3 1325 aa6.82□□□□□ -1.32
PTPRB-202ENST00000334414 MYO6Q9UM54 1294 aa6.82□□□□□ -1.32
PTPRB-202ENST00000334414 RRP9O43818 475 aaKnown RBP6.82□□□□□ -1.32
PTPRB-202ENST00000334414 CCDC191Q8NCU4 936 aa6.82□□□□□ -1.32
PTPRB-202ENST00000334414 ANKRD30AQ9BXX3 1397 aa6.82□□□□□ -1.32
PTPRB-202ENST00000334414 CEP89Q96ST8 783 aa6.82□□□□□ -1.32
PTPRB-202ENST00000334414 RRP12Q5JTH9 1297 aaKnown RBP6.81□□□□□ -1.32
PTPRB-202ENST00000334414 NINLQ9Y2I6 1382 aa6.81□□□□□ -1.32
PTPRB-202ENST00000334414 ANKRD20A12PQ8NF67 263 aa6.81□□□□□ -1.32
PTPRB-202ENST00000334414 IPO7O95373 1038 aaKnown RBP6.81□□□□□ -1.32
PTPRB-202ENST00000334414 GZF1Q9H116 711 aaPredicted RBP6.81□□□□□ -1.32
PTPRB-202ENST00000334414 KDM2AQ9Y2K7 1162 aa6.81□□□□□ -1.32
PTPRB-202ENST00000334414 PPP1R15AO75807 674 aaPredicted RBP6.8□□□□□ -1.32
PTPRB-202ENST00000334414 RUFY1Q96T51 708 aa6.8□□□□□ -1.32
PTPRB-202ENST00000334414 MRE11P49959 708 aa6.8□□□□□ -1.32
PTPRB-202ENST00000334414 CHIC2Q9UKJ5 165 aa6.8□□□□□ -1.32
PTPRB-202ENST00000334414 CAGE1Q8TC20 777 aa6.8□□□□□ -1.32
PTPRB-202ENST00000334414 NAT10Q9H0A0 1025 aaKnown RBP6.8□□□□□ -1.32
PTPRB-202ENST00000334414 ZRSR2Q15696 482 aaKnown RBP6.8□□□□□ -1.32
PTPRB-202ENST00000334414 LMOD3Q0VAK6 560 aa6.8□□□□□ -1.32
PTPRB-202ENST00000334414 UACAQ9BZF9 1416 aa6.79□□□□□ -1.32
PTPRB-202ENST00000334414 CGNL1Q0VF96 1302 aa6.79□□□□□ -1.32
PTPRB-202ENST00000334414 GOLGA6L7A0A1B0GV03 622 aa6.79□□□□□ -1.32
PTPRB-202ENST00000334414 CUX1P39880 1505 aa6.79□□□□□ -1.32
PTPRB-202ENST00000334414 SLKQ9H2G2 1235 aaPredicted RBP6.79□□□□□ -1.32
PTPRB-202ENST00000334414 REC8O95072 547 aa6.79□□□□□ -1.32
PTPRB-202ENST00000334414 INCENPQ9NQS7 918 aa6.78□□□□□ -1.32
PTPRB-202ENST00000334414 SPAG9O60271 1321 aaKnown RBP6.78□□□□□ -1.32
PTPRB-202ENST00000334414 NAP1L2Q9ULW6 460 aaPredicted RBP6.78□□□□□ -1.32
PTPRB-202ENST00000334414 LEKR1Q6ZMV7 388 aa6.78□□□□□ -1.32
PTPRB-202ENST00000334414 CCDC173Q0VFZ6 552 aa6.78□□□□□ -1.32
PTPRB-202ENST00000334414 GRWD1Q9BQ67 446 aaKnown RBP eCLIP6.78□□□□□ -1.32
PTPRB-202ENST00000334414 LRRFIP1Q32MZ4 808 aaKnown RBP6.78□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms