RNA–Protein interactions for RNA: ENST00000322213.8

SMC1A-201, Transcript of structural maintenance of chromosomes 1A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMC1A, Length 9,784 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1A-201ENST00000322213 ZMYND15Q9H091 742 aa8.94□□□□□ -0.98
SMC1A-201ENST00000322213 SLKQ9H2G2 1235 aaPredicted RBP8.94□□□□□ -0.98
SMC1A-201ENST00000322213 MYH10P35580 1976 aa8.94□□□□□ -0.98
SMC1A-201ENST00000322213 CUX1P39880 1505 aa8.94□□□□□ -0.98
SMC1A-201ENST00000322213 ROCK2O75116 1388 aaKnown RBP8.94□□□□□ -0.98
SMC1A-201ENST00000322213 SOGA1O94964 1423 aa8.93□□□□□ -0.98
SMC1A-201ENST00000322213 CDCA8Q53HL2 280 aa8.93□□□□□ -0.98
SMC1A-201ENST00000322213 DHX57Q6P158 1386 aaKnown RBP8.92□□□□□ -0.98
SMC1A-201ENST00000322213 TPM2P07951 284 aa8.92□□□□□ -0.98
SMC1A-201ENST00000322213 WDR97A6NE52 1622 aa8.91□□□□□ -0.98
SMC1A-201ENST00000322213 SKOR2Q2VWA4 1001 aaPredicted RBP8.91□□□□□ -0.98
SMC1A-201ENST00000322213 DRC7Q8IY82 874 aa8.91□□□□□ -0.98
SMC1A-201ENST00000322213 CTTNBP2Q8WZ74 1663 aa8.91□□□□□ -0.98
SMC1A-201ENST00000322213 CHIC2Q9UKJ5 165 aa8.91□□□□□ -0.98
SMC1A-201ENST00000322213 SIN3AQ96ST3 1273 aa8.91□□□□□ -0.98
SMC1A-201ENST00000322213 CSPP1Q1MSJ5 1256 aa8.9□□□□□ -0.98
SMC1A-201ENST00000322213 SPRYD3Q8NCJ5 442 aa8.9□□□□□ -0.98
SMC1A-201ENST00000322213 CCDC18Q5T9S5 1454 aa8.9□□□□□ -0.98
SMC1A-201ENST00000322213 MROH2BQ7Z745 1585 aa8.9□□□□□ -0.98
SMC1A-201ENST00000322213 GON4LQ3T8J9 2241 aa8.9□□□□□ -0.98
SMC1A-201ENST00000322213 SMARCA2P51531 1590 aa8.9□□□□□ -0.99
SMC1A-201ENST00000322213 RALBP1Q15311 655 aa8.9□□□□□ -0.99
SMC1A-201ENST00000322213 FAM161AQ3B820 660 aa8.9□□□□□ -0.99
SMC1A-201ENST00000322213 BRPF3Q9ULD4 1205 aa8.9□□□□□ -0.99
SMC1A-201ENST00000322213 MAPK8IP3Q9UPT6 1336 aa8.9□□□□□ -0.99
SMC1A-201ENST00000322213 PDE4AP27815 886 aa8.89□□□□□ -0.99
SMC1A-201ENST00000322213 CENPQQ7L2Z9 268 aaPredicted RBP8.89□□□□□ -0.99
SMC1A-201ENST00000322213 ZNF777Q9ULD5 760 aaPredicted RBP8.89□□□□□ -0.99
SMC1A-201ENST00000322213 PLCB2Q00722 1185 aa8.89□□□□□ -0.99
SMC1A-201ENST00000322213 KCNH8Q96L42 1107 aa8.88□□□□□ -0.99
SMC1A-201ENST00000322213 RRP7BPQ9NSQ0 103 aa8.88□□□□□ -0.99
SMC1A-201ENST00000322213 KDM2AQ9Y2K7 1162 aa8.88□□□□□ -0.99
SMC1A-201ENST00000322213 KIF15Q9NS87 1388 aa8.88□□□□□ -0.99
SMC1A-201ENST00000322213 TAF7LQ5H9L4 462 aa8.88□□□□□ -0.99
SMC1A-201ENST00000322213 PDE3BQ13370 1112 aa8.87□□□□□ -0.99
SMC1A-201ENST00000322213 CARD11Q9BXL7 1154 aa8.87□□□□□ -0.99
SMC1A-201ENST00000322213 TAF3Q5VWG9 929 aa8.87□□□□□ -0.99
SMC1A-201ENST00000322213 MCCP23508 829 aa8.87□□□□□ -0.99
SMC1A-201ENST00000322213 CFAP53Q96M91 514 aa8.86□□□□□ -0.99
SMC1A-201ENST00000322213 ERICH3Q5RHP9 1530 aa8.86□□□□□ -0.99
SMC1A-201ENST00000322213 FMN1Q68DA7 1419 aa8.86□□□□□ -0.99
SMC1A-201ENST00000322213 MSH5O43196 834 aa8.86□□□□□ -0.99
SMC1A-201ENST00000322213 SETD1BQ9UPS6 1966 aaKnown RBP8.86□□□□□ -0.99
SMC1A-201ENST00000322213 ZNF771Q7L3S4 317 aaPredicted RBP8.86□□□□□ -0.99
SMC1A-201ENST00000322213 PMFBP1Q8TBY8 1022 aa8.85□□□□□ -0.99
SMC1A-201ENST00000322213 PLEKHG5O94827 1062 aa8.85□□□□□ -0.99
SMC1A-201ENST00000322213 KIF21AQ7Z4S6 1674 aa8.85□□□□□ -0.99
SMC1A-201ENST00000322213 PDIA4P13667 645 aaKnown RBP8.85□□□□□ -0.99
SMC1A-201ENST00000322213 FRAT1Q92837 279 aaPredicted RBP8.85□□□□□ -0.99
SMC1A-201ENST00000322213 NFKBIBQ15653 356 aa8.84□□□□□ -0.99
SMC1A-201ENST00000322213 HSPA5P11021 654 aaKnown RBP8.84□□□□□ -0.99
SMC1A-201ENST00000322213 RRP1P56182 461 aaKnown RBP8.84□□□□□ -0.99
SMC1A-201ENST00000322213 FAM13BQ9NYF5 915 aa8.84□□□□□ -0.99
SMC1A-201ENST00000322213 CFAP43Q8NDM7 1665 aa8.84□□□□□ -0.99
SMC1A-201ENST00000322213 CNTLNQ9NXG0 1405 aa8.83□□□□□ -1
SMC1A-201ENST00000322213 GOLGA6L1Q8N7Z2 621 aa8.83□□□□□ -1
SMC1A-201ENST00000322213 CALD1Q05682 793 aaKnown RBP8.83□□□□□ -1
SMC1A-201ENST00000322213 SETQ01105 290 aaPredicted RBP8.83□□□□□ -1
SMC1A-201ENST00000322213 RAPGEF2Q9Y4G8 1499 aa8.83□□□□□ -1
SMC1A-201ENST00000322213 GOLGA6L4A6NEF3 574 aa8.83□□□□□ -1
SMC1A-201ENST00000322213 KIF16BQ96L93 1317 aa8.83□□□□□ -1
SMC1A-201ENST00000322213 EIF3AQ14152 1382 aaKnown RBP8.82□□□□□ -1
SMC1A-201ENST00000322213 RWDD1Q9H446 243 aaPredicted RBP8.82□□□□□ -1
SMC1A-201ENST00000322213 SENP3-EIF4A1A0A087X0R7 540 aa8.82□□□□□ -1
SMC1A-201ENST00000322213 ARID3CA6NKF2 412 aa8.82□□□□□ -1
SMC1A-201ENST00000322213 TPRNQ4KMQ1 711 aa8.81□□□□□ -1
SMC1A-201ENST00000322213 HTATSF1O43719 755 aaKnown RBP8.81□□□□□ -1
SMC1A-201ENST00000322213 CC2D1BQ5T0F9 858 aaKnown RBP8.81□□□□□ -1
SMC1A-201ENST00000322213 PABPN1Q86U42 306 aaKnown RBP eCLIP8.81□□□□□ -1
SMC1A-201ENST00000322213 APPP05067 770 aa8.8□□□□□ -1
SMC1A-201ENST00000322213 TEX35Q5T0J7 233 aa8.8□□□□□ -1
SMC1A-201ENST00000322213 MRE11P49959 708 aa8.8□□□□□ -1
SMC1A-201ENST00000322213 TIAM1Q13009 1591 aa8.79□□□□□ -1
SMC1A-201ENST00000322213 EIF4G1Q04637 1599 aaKnown RBP8.79□□□□□ -1
SMC1A-201ENST00000322213 CCDC66A2RUB6 948 aa8.79□□□□□ -1
SMC1A-201ENST00000322213 NOM1Q5C9Z4 860 aaKnown RBP8.79□□□□□ -1
SMC1A-201ENST00000322213 NASPP49321 788 aaPredicted RBP8.79□□□□□ -1
SMC1A-201ENST00000322213 C11orf95C9JLR9 678 aaPredicted RBP8.78□□□□□ -1
SMC1A-201ENST00000322213 MYBBP1AQ9BQG0 1328 aaKnown RBP8.78□□□□□ -1
SMC1A-201ENST00000322213 PPP1R15AO75807 674 aaPredicted RBP8.78□□□□□ -1
SMC1A-201ENST00000322213 ISY1Q9ULR0 285 aaKnown RBP8.78□□□□□ -1
SMC1A-201ENST00000322213 CECR2Q9BXF3 1484 aa8.78□□□□□ -1
SMC1A-201ENST00000322213 MFAP1P55081 439 aaKnown RBP8.78□□□□□ -1
SMC1A-201ENST00000322213 PDCL3Q9H2J4 239 aa8.78□□□□□ -1
SMC1A-201ENST00000322213 ST18O60284 1047 aa8.77□□□□□ -1
SMC1A-201ENST00000322213 ZBTB7CA1YPR0 619 aa8.77□□□□□ -1.01
SMC1A-201ENST00000322213 TSPY4P0CV99 314 aa8.77□□□□□ -1.01
SMC1A-201ENST00000322213 TSPY10P0CW01 314 aa8.77□□□□□ -1.01
SMC1A-201ENST00000322213 TMF1P82094 1093 aa8.77□□□□□ -1.01
SMC1A-201ENST00000322213 NLRP13Q86W25 1043 aa8.77□□□□□ -1.01
SMC1A-201ENST00000322213 ADGBQ8N7X0 1667 aa8.76□□□□□ -1.01
SMC1A-201ENST00000322213 IPO8O15397 1037 aaKnown RBP8.76□□□□□ -1.01
SMC1A-201ENST00000322213 GPS2Q13227 327 aa8.76□□□□□ -1.01
SMC1A-201ENST00000322213 PAK3O75914 559 aaPredicted RBP8.76□□□□□ -1.01
SMC1A-201ENST00000322213 ITSN2Q9NZM3 1697 aa8.76□□□□□ -1.01
SMC1A-201ENST00000322213 CALRP27797 417 aaKnown RBP8.76□□□□□ -1.01
SMC1A-201ENST00000322213 AKNAQ7Z591 1439 aa8.76□□□□□ -1.01
SMC1A-201ENST00000322213 PLEKHH2Q8IVE3 1493 aa8.76□□□□□ -1.01
SMC1A-201ENST00000322213 MYH6P13533 1939 aa8.76□□□□□ -1.01
SMC1A-201ENST00000322213 TOP2BQ02880 1626 aa8.76□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms