RNA–Protein interactions for RNA: ENST00000308987.5

CKS1B-201, Transcript of CDC28 protein kinase regulatory subunit 1B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CKS1B, Length 759 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1B-201ENST00000308987 ARSIQ5FYB1 569 aa10.75□□□□□ -0.69
CKS1B-201ENST00000308987 ABCC9O60706 1549 aa10.74□□□□□ -0.69
CKS1B-201ENST00000308987 ANKRD13DQ6ZTN6 518 aa10.73□□□□□ -0.69
CKS1B-201ENST00000308987 PHF8Q9UPP1 1060 aa10.73□□□□□ -0.69
CKS1B-201ENST00000308987 PTGER2P43116 358 aa10.72□□□□□ -0.69
CKS1B-201ENST00000308987 KHSRPQ92945 711 aaKnown RBP eCLIP10.7□□□□□ -0.7
CKS1B-201ENST00000308987 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP10.69□□□□□ -0.7
CKS1B-201ENST00000308987 RIOK3O14730 519 aaKnown RBP10.69□□□□□ -0.7
CKS1B-201ENST00000308987 ZFP91Q96JP5 570 aaPredicted RBP10.69□□□□□ -0.7
CKS1B-201ENST00000308987 ZNF316A6NFI3 1004 aaPredicted RBP10.68□□□□□ -0.7
CKS1B-201ENST00000308987 RNF25Q96BH1 459 aaPredicted RBP10.68□□□□□ -0.7
CKS1B-201ENST00000308987 VGFO15240 615 aaPredicted RBP10.64□□□□□ -0.71
CKS1B-201ENST00000308987 LSM11P83369 360 aaKnown RBP eCLIP10.64□□□□□ -0.71
CKS1B-201ENST00000308987 CCDC180Q9P1Z9 1646 aa10.64□□□□□ -0.71
CKS1B-201ENST00000308987 NLRP6P59044 892 aa10.6□□□□□ -0.71
CKS1B-201ENST00000308987 FBXO22Q8NEZ5 403 aa10.58□□□□□ -0.72
CKS1B-201ENST00000308987 NUDT7P0C024 238 aa10.56□□□□□ -0.72
CKS1B-201ENST00000308987 POTEEQ6S8J3 1075 aa10.55□□□□□ -0.72
CKS1B-201ENST00000308987 KIF3CO14782 793 aa10.54□□□□□ -0.72
CKS1B-201ENST00000308987 PBX2P40425 430 aa10.54□□□□□ -0.72
CKS1B-201ENST00000308987 AXIN2Q9Y2T1 843 aa10.54□□□□□ -0.72
CKS1B-201ENST00000308987 C2orf72A6NCS6 295 aa10.53□□□□□ -0.72
CKS1B-201ENST00000308987 BCL11BQ9C0K0 894 aaPredicted RBP10.53□□□□□ -0.72
CKS1B-201ENST00000308987 LHX6Q9UPM6 363 aa10.53□□□□□ -0.72
CKS1B-201ENST00000308987 PLA2G2EQ9NZK7 142 aa10.51□□□□□ -0.73
CKS1B-201ENST00000308987 MFRPQ9BY79 579 aa10.5□□□□□ -0.73
CKS1B-201ENST00000308987 PCDHGA4Q9Y5G9 962 aa10.49□□□□□ -0.73
CKS1B-201ENST00000308987 HCSTQ9UBK5 93 aa10.48□□□□□ -0.73
CKS1B-201ENST00000308987 STK24Q9Y6E0 443 aa10.48□□□□□ -0.73
CKS1B-201ENST00000308987 SLC34A2O95436 690 aa10.47□□□□□ -0.73
CKS1B-201ENST00000308987 TAOK2Q9UL54 1235 aa10.45□□□□□ -0.74
CKS1B-201ENST00000308987 ADGRD1Q6QNK2 874 aa10.43□□□□□ -0.74
CKS1B-201ENST00000308987 ARHGAP33O14559 1287 aa10.42□□□□□ -0.74
CKS1B-201ENST00000308987 STK25O00506 426 aa10.4□□□□□ -0.74
CKS1B-201ENST00000308987 TMC2Q8TDI7 906 aa10.4□□□□□ -0.74
CKS1B-201ENST00000308987 PSDA5PKW4 1024 aaPredicted RBP10.36□□□□□ -0.75
CKS1B-201ENST00000308987 KDM4FA0A1W2PPD8 638 aa10.35□□□□□ -0.75
CKS1B-201ENST00000308987 TK2O00142 265 aa10.35□□□□□ -0.75
CKS1B-201ENST00000308987 DMRTA1Q5VZB9 504 aa10.35□□□□□ -0.75
CKS1B-201ENST00000308987 HRO43593 1189 aa10.34□□□□□ -0.75
CKS1B-201ENST00000308987 PSEN2P49810 448 aa10.34□□□□□ -0.75
CKS1B-201ENST00000308987 PPP1R37O75864 691 aa10.31□□□□□ -0.76
CKS1B-201ENST00000308987 PTCD2Q8WV60 388 aaKnown RBP10.3□□□□□ -0.76
CKS1B-201ENST00000308987 KCTD12Q96CX2 325 aaKnown RBP10.3□□□□□ -0.76
CKS1B-201ENST00000308987 ECM2O94769 699 aaPredicted RBP10.28□□□□□ -0.76
CKS1B-201ENST00000308987 STAC3Q96MF2 364 aa10.26□□□□□ -0.77
CKS1B-201ENST00000308987 PPP4R3BQ5MIZ7 849 aa10.25□□□□□ -0.77
CKS1B-201ENST00000308987 PLPP6Q8IY26 295 aa10.24□□□□□ -0.77
CKS1B-201ENST00000308987 RGL2O15211 777 aa10.23□□□□□ -0.77
CKS1B-201ENST00000308987 FOXK1P85037 733 aa10.22□□□□□ -0.77
CKS1B-201ENST00000308987 KCNK17Q96T54 332 aa10.2□□□□□ -0.78
CKS1B-201ENST00000308987 TBC1D12O60347 775 aa10.19□□□□□ -0.78
CKS1B-201ENST00000308987 PTPN5P54829 565 aa10.19□□□□□ -0.78
CKS1B-201ENST00000308987 GPHNQ9NQX3 736 aaPredicted RBP10.18□□□□□ -0.78
CKS1B-201ENST00000308987 VPS9D1Q9Y2B5 631 aa10.18□□□□□ -0.78
CKS1B-201ENST00000308987 DSG2Q14126 1118 aa10.17□□□□□ -0.78
CKS1B-201ENST00000308987 PKD2Q13563 968 aa10.16□□□□□ -0.78
CKS1B-201ENST00000308987 KCNH8Q96L42 1107 aa10.16□□□□□ -0.78
CKS1B-201ENST00000308987 RB1CC1Q8TDY2 1594 aa10.14□□□□□ -0.79
CKS1B-201ENST00000308987 RGS20O76081 388 aa10.14□□□□□ -0.79
CKS1B-201ENST00000308987 IFFO2Q5TF58 517 aa10.13□□□□□ -0.79
CKS1B-201ENST00000308987 SLC4A5Q9BY07 1137 aa10.1□□□□□ -0.79
CKS1B-201ENST00000308987 IRX2Q9BZI1 471 aaPredicted RBP10.1□□□□□ -0.79
CKS1B-201ENST00000308987 THSD4Q6ZMP0 1018 aa10.09□□□□□ -0.79
CKS1B-201ENST00000308987 ZNF454Q8N9F8 522 aa10.09□□□□□ -0.79
CKS1B-201ENST00000308987 OXER1Q8TDS5 423 aa10.09□□□□□ -0.79
CKS1B-201ENST00000308987 UNC13AQ9UPW8 1703 aa10.08□□□□□ -0.8
CKS1B-201ENST00000308987 BHMG1C9JSJ3 638 aaPredicted RBP10.08□□□□□ -0.8
CKS1B-201ENST00000308987 BCL2L12Q9HB09 334 aa10.08□□□□□ -0.8
CKS1B-201ENST00000308987 UPF1Q92900 1129 aaKnown RBP eCLIP10.07□□□□□ -0.82e-28■■■□□ 15.7
CKS1B-201ENST00000308987 A0A0G2JS52 829 aa10.06□□□□□ -0.8
CKS1B-201ENST00000308987 GOLGA8CPA6NN73 597 aa10.05□□□□□ -0.8
CKS1B-201ENST00000308987 NACADO15069 1562 aa10.05□□□□□ -0.8
CKS1B-201ENST00000308987 WNT2BQ93097 391 aa10.04□□□□□ -0.8
CKS1B-201ENST00000308987 PTPREP23469 700 aa10.03□□□□□ -0.8
CKS1B-201ENST00000308987 FOSBP53539 338 aa10.03□□□□□ -0.8
CKS1B-201ENST00000308987 ZBED2Q9BTP6 218 aa10.03□□□□□ -0.8
CKS1B-201ENST00000308987 MRPL50Q8N5N7 158 aaKnown RBP10.02□□□□□ -0.81
CKS1B-201ENST00000308987 HS6ST3Q8IZP7 471 aa9.99□□□□□ -0.81
CKS1B-201ENST00000308987 ANO8Q9HCE9 1232 aaPredicted RBP9.98□□□□□ -0.81
CKS1B-201ENST00000308987 CRISPLD2Q9H0B8 497 aa9.97□□□□□ -0.81
CKS1B-201ENST00000308987 PPP1R15BQ5SWA1 713 aa9.96□□□□□ -0.82
CKS1B-201ENST00000308987 BICRAQ9NZM4 1560 aa9.96□□□□□ -0.82
CKS1B-201ENST00000308987 JPH4Q96JJ6 628 aa9.95□□□□□ -0.82
CKS1B-201ENST00000308987 ADAM33Q9BZ11 813 aa9.95□□□□□ -0.82
CKS1B-201ENST00000308987 ZDHHC16Q969W1 377 aa9.94□□□□□ -0.82
CKS1B-201ENST00000308987 NBPF3Q9H094 633 aa9.94□□□□□ -0.82
CKS1B-201ENST00000308987 EVI5O60447 810 aa9.92□□□□□ -0.82
CKS1B-201ENST00000308987 DCAF8L2P0C7V8 631 aa9.91□□□□□ -0.82
CKS1B-201ENST00000308987 CHGAP10645 457 aaKnown RBP9.91□□□□□ -0.82
CKS1B-201ENST00000308987 NKX1-1Q15270 411 aaPredicted RBP9.9□□□□□ -0.82
CKS1B-201ENST00000308987 ITGBL1O95965 494 aaPredicted RBP9.89□□□□□ -0.83
CKS1B-201ENST00000308987 NCKAP5LQ9HCH0 1330 aa9.88□□□□□ -0.83
CKS1B-201ENST00000308987 PDE4AP27815 886 aa9.88□□□□□ -0.83
CKS1B-201ENST00000308987 Q6ZNB5 142 aa9.87□□□□□ -0.83
CKS1B-201ENST00000308987 ANKK1Q8NFD2 765 aa9.87□□□□□ -0.83
CKS1B-201ENST00000308987 RABGEF1Q9UJ41 708 aa9.87□□□□□ -0.83
CKS1B-201ENST00000308987 PROX2Q3B8N5 592 aa9.86□□□□□ -0.83
CKS1B-201ENST00000308987 MYO15BQ96JP2 1530 aa9.86□□□□□ -0.83
CKS1B-201ENST00000308987 BCAMP50895 628 aa9.85□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms