RNA–Protein interactions for RNA: ENST00000298281.8

PCF11-201, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PCF11, Length 7,677 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-201ENST00000298281 KIF27Q86VH2 1401 aa15.26■□□□□ 0.03
PCF11-201ENST00000298281 SOX12O15370 315 aa15.25■□□□□ 0.03
PCF11-201ENST00000298281 CCDC9Q9Y3X0 531 aaKnown RBP15.25■□□□□ 0.03
PCF11-201ENST00000298281 CCDC180Q9P1Z9 1646 aa15.25■□□□□ 0.03
PCF11-201ENST00000298281 SUPT16HQ9Y5B9 1047 aaKnown RBP15.24■□□□□ 0.03
PCF11-201ENST00000298281 HSP90B1P14625 803 aaKnown RBP15.24■□□□□ 0.03
PCF11-201ENST00000298281 KANK1Q14678 1352 aa15.24■□□□□ 0.03
PCF11-201ENST00000298281 TPM4P67936 248 aa15.24■□□□□ 0.03
PCF11-201ENST00000298281 MARCH6O60337 910 aa15.23■□□□□ 0.03
PCF11-201ENST00000298281 CEP162Q5TB80 1403 aa15.23■□□□□ 0.03
PCF11-201ENST00000298281 RB1CC1Q8TDY2 1594 aa15.23■□□□□ 0.03
PCF11-201ENST00000298281 SPRYD3Q8NCJ5 442 aa15.23■□□□□ 0.03
PCF11-201ENST00000298281 FRAT1Q92837 279 aaPredicted RBP15.23■□□□□ 0.03
PCF11-201ENST00000298281 USP35Q9P2H5 1018 aa15.23■□□□□ 0.03
PCF11-201ENST00000298281 TMF1P82094 1093 aa15.22■□□□□ 0.03
PCF11-201ENST00000298281 TCEAL9Q9UHQ7 104 aa15.22■□□□□ 0.03
PCF11-201ENST00000298281 HSCBQ8IWL3 235 aa15.21■□□□□ 0.03
PCF11-201ENST00000298281 CHMP4AQ9BY43 222 aa15.21■□□□□ 0.03
PCF11-201ENST00000298281 RRP12Q5JTH9 1297 aaKnown RBP15.21■□□□□ 0.02
PCF11-201ENST00000298281 PES1O00541 588 aaKnown RBP15.2■□□□□ 0.02
PCF11-201ENST00000298281 RGS3P49796 1198 aa15.2■□□□□ 0.02
PCF11-201ENST00000298281 KIAA1211Q6ZU35 1233 aa15.2■□□□□ 0.02
PCF11-201ENST00000298281 CEP164Q9UPV0 1460 aa15.2■□□□□ 0.02
PCF11-201ENST00000298281 U2SURPO15042 1029 aaKnown RBP15.2■□□□□ 0.02
PCF11-201ENST00000298281 UTP3Q9NQZ2 479 aaKnown RBP eCLIP15.19■□□□□ 0.026e-10■■■■■ 59.4
PCF11-201ENST00000298281 TIMELESSQ9UNS1 1208 aa15.18■□□□□ 0.02
PCF11-201ENST00000298281 FHAD1B1AJZ9 1412 aa15.18■□□□□ 0.02
PCF11-201ENST00000298281 TRHP20396 242 aaPredicted RBP15.17■□□□□ 0.02
PCF11-201ENST00000298281 PTMSP20962 102 aa15.17■□□□□ 0.02
PCF11-201ENST00000298281 CWC22Q9HCG8 908 aaKnown RBP15.17■□□□□ 0.02
PCF11-201ENST00000298281 NOP58Q9Y2X3 529 aaKnown RBP15.17■□□□□ 0.02
PCF11-201ENST00000298281 CHMP3Q9Y3E7 222 aa15.17■□□□□ 0.02
PCF11-201ENST00000298281 WRNQ14191 1432 aaPredicted RBP eCLIP15.17■□□□□ 0.02
PCF11-201ENST00000298281 TAF7LQ5H9L4 462 aa15.17■□□□□ 0.02
PCF11-201ENST00000298281 GORABQ5T7V8 394 aa15.16■□□□□ 0.02
PCF11-201ENST00000298281 CCDC34Q96HJ3 373 aa15.16■□□□□ 0.02
PCF11-201ENST00000298281 CALD1Q05682 793 aaKnown RBP15.15■□□□□ 0.02
PCF11-201ENST00000298281 CCNB3Q8WWL7 1395 aa15.14■□□□□ 0.01
PCF11-201ENST00000298281 IPO8O15397 1037 aaKnown RBP15.14■□□□□ 0.01
PCF11-201ENST00000298281 TNIKQ9UKE5 1360 aa15.14■□□□□ 0.01
PCF11-201ENST00000298281 TPM3P06753 285 aa15.13■□□□□ 0.01
PCF11-201ENST00000298281 RTF1Q92541 710 aaKnown RBP15.13■□□□□ 0.01
PCF11-201ENST00000298281 FRAT2O75474 233 aaPredicted RBP15.13■□□□□ 0.01
PCF11-201ENST00000298281 BAZ1BQ9UIG0 1483 aaKnown RBP15.12■□□□□ 0.01
PCF11-201ENST00000298281 CTDP1Q9Y5B0 961 aaPredicted RBP15.12■□□□□ 0.01
PCF11-201ENST00000298281 ABCF1Q8NE71 845 aaKnown RBP eCLIP15.12■□□□□ 0.01
PCF11-201ENST00000298281 APBB1O00213 710 aa15.11■□□□□ 0.01
PCF11-201ENST00000298281 HTATSF1O43719 755 aaKnown RBP15.11■□□□□ 0.01
PCF11-201ENST00000298281 TPD52L1Q16890 204 aaPredicted RBP15.11■□□□□ 0.01
PCF11-201ENST00000298281 CC2D1BQ5T0F9 858 aaKnown RBP15.1■□□□□ 0.01
PCF11-201ENST00000298281 HDAC5Q9UQL6 1122 aa15.1■□□□□ 0.01
PCF11-201ENST00000298281 DCAF8L1A6NGE4 600 aa15.09■□□□□ 0.01
PCF11-201ENST00000298281 SRPK2P78362 688 aaKnown RBP15.09■□□□□ 0.01
PCF11-201ENST00000298281 TSR1Q2NL82 804 aaKnown RBP15.09■□□□□ 0.01
PCF11-201ENST00000298281 MORC1Q86VD1 984 aa15.09■□□□□ 0.01
PCF11-201ENST00000298281 KAT6BQ8WYB5 2073 aa15.08■□□□□ 0.01
PCF11-201ENST00000298281 RAD21O60216 631 aa15.08■□□□□ 0.01
PCF11-201ENST00000298281 PAK3O75914 559 aaPredicted RBP15.08■□□□□ 0
PCF11-201ENST00000298281 VSIG10Q8N0Z9 540 aa15.07■□□□□ 0
PCF11-201ENST00000298281 ERCC6Q03468 1493 aa15.07■□□□□ 0
PCF11-201ENST00000298281 CSB-PGBD3P0DP91 1061 aa15.07■□□□□ 0
PCF11-201ENST00000298281 DCAF11Q8TEB1 546 aa15.06■□□□□ 0
PCF11-201ENST00000298281 HDGFL2Q7Z4V5 671 aaPredicted RBP15.06■□□□□ 0
PCF11-201ENST00000298281 TRIM34Q9BYJ4 488 aa15.06■□□□□ 0
PCF11-201ENST00000298281 GBP4Q96PP9 640 aa15.06■□□□□ 0
PCF11-201ENST00000298281 MSH5O43196 834 aa15.05■□□□□ -0
PCF11-201ENST00000298281 PAF1Q8N7H5 531 aa15.05■□□□□ -0
PCF11-201ENST00000298281 CCER2I3L3R5 266 aa15.05■□□□□ -0
PCF11-201ENST00000298281 CCAR2Q8N163 923 aaKnown RBP15.04■□□□□ -0
PCF11-201ENST00000298281 SYAP1Q96A49 352 aaPredicted RBP15.04■□□□□ -0
PCF11-201ENST00000298281 GTF2E1P29083 439 aaPredicted RBP15.04■□□□□ -0
PCF11-201ENST00000298281 TOMM22Q9NS69 142 aa15.03■□□□□ -0
PCF11-201ENST00000298281 APPP05067 770 aa15.02□□□□□ -0.01
PCF11-201ENST00000298281 TPM2P07951 284 aa15.02□□□□□ -0.01
PCF11-201ENST00000298281 KTN1Q86UP2 1357 aaKnown RBP15.02□□□□□ -0.01
PCF11-201ENST00000298281 PHF23Q9BUL5 403 aaPredicted RBP15.01□□□□□ -0.01
PCF11-201ENST00000298281 NACADO15069 1562 aa15.01□□□□□ -0.01
PCF11-201ENST00000298281 GPATCH3Q96I76 525 aa15.01□□□□□ -0.01
PCF11-201ENST00000298281 CCDC70Q6NSX1 233 aa15□□□□□ -0.01
PCF11-201ENST00000298281 ODF2Q5BJF6 829 aa15□□□□□ -0.01
PCF11-201ENST00000298281 KLHL34Q8N239 644 aa15□□□□□ -0.01
PCF11-201ENST00000298281 RWDD1Q9H446 243 aaPredicted RBP15□□□□□ -0.01
PCF11-201ENST00000298281 GZF1Q9H116 711 aaPredicted RBP14.99□□□□□ -0.01
PCF11-201ENST00000298281 B4GALNT3Q6L9W6 998 aa14.99□□□□□ -0.01
PCF11-201ENST00000298281 AK7Q96M32 723 aa14.98□□□□□ -0.01
PCF11-201ENST00000298281 SIN3AQ96ST3 1273 aa14.98□□□□□ -0.01
PCF11-201ENST00000298281 SPAG9O60271 1321 aaKnown RBP14.97□□□□□ -0.01
PCF11-201ENST00000298281 CSPP1Q1MSJ5 1256 aa14.97□□□□□ -0.01
PCF11-201ENST00000298281 PCMTD1Q96MG8 357 aaPredicted RBP14.97□□□□□ -0.01
PCF11-201ENST00000298281 TRIM6-TRIM34B2RNG4 842 aa14.96□□□□□ -0.01
PCF11-201ENST00000298281 MLECQ14165 292 aa14.96□□□□□ -0.01
PCF11-201ENST00000298281 RALBP1Q15311 655 aa14.96□□□□□ -0.01
PCF11-201ENST00000298281 SF3A1Q15459 793 aaKnown RBP14.96□□□□□ -0.01
PCF11-201ENST00000298281 HMMRO75330 724 aa14.95□□□□□ -0.02
PCF11-201ENST00000298281 EIF3AQ14152 1382 aaKnown RBP14.95□□□□□ -0.02
PCF11-201ENST00000298281 STK31Q9BXU1 1019 aa14.95□□□□□ -0.02
PCF11-201ENST00000298281 CCDC43Q96MW1 224 aaKnown RBP14.94□□□□□ -0.02
PCF11-201ENST00000298281 PMFBP1Q8TBY8 1022 aa14.94□□□□□ -0.02
PCF11-201ENST00000298281 SAMD1Q6SPF0 538 aaPredicted RBP14.94□□□□□ -0.02
PCF11-201ENST00000298281 FBXW7Q969H0 707 aa14.93□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 62.8 ms