RNA–Protein interactions for RNA: ENST00000269318.9

CCDC40-201, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2 BASIC

Gene CCDC40, Length 1,970 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-201ENST00000269318 ROCK1Q13464 1354 aa24.31■■□□□ 1.48
CCDC40-201ENST00000269318 RRP7BPQ9NSQ0 103 aa24.31■■□□□ 1.48
CCDC40-201ENST00000269318 CDC42BPAQ5VT25 1732 aa24.3■■□□□ 1.48
CCDC40-201ENST00000269318 KDM6BO15054 1643 aa24.27■■□□□ 1.48
CCDC40-201ENST00000269318 DIEXFQ68CQ4 756 aaKnown RBP24.24■■□□□ 1.47
CCDC40-201ENST00000269318 SIN3AQ96ST3 1273 aa24.23■■□□□ 1.47
CCDC40-201ENST00000269318 UHRF1BP1LA0JNW5 1464 aa24.22■■□□□ 1.47
CCDC40-201ENST00000269318 CROCC2H7BZ55 1655 aa24.21■■□□□ 1.47
CCDC40-201ENST00000269318 TIMELESSQ9UNS1 1208 aa24.19■■□□□ 1.46
CCDC40-201ENST00000269318 ZNF777Q9ULD5 760 aaPredicted RBP24.18■■□□□ 1.46
CCDC40-201ENST00000269318 ADGRL2O95490 1459 aa24.17■■□□□ 1.46
CCDC40-201ENST00000269318 ADGBQ8N7X0 1667 aa24.17■■□□□ 1.46
CCDC40-201ENST00000269318 DENND4BO75064 1496 aaPredicted RBP24.16■■□□□ 1.46
CCDC40-201ENST00000269318 PREX2Q70Z35 1606 aa24.16■■□□□ 1.46
CCDC40-201ENST00000269318 KDM5BQ9UGL1 1544 aa24.15■■□□□ 1.46
CCDC40-201ENST00000269318 NEUROD1Q13562 356 aa24.15■■□□□ 1.46
CCDC40-201ENST00000269318 NCOA1Q15788 1441 aa24.14■■□□□ 1.46
CCDC40-201ENST00000269318 ZCCHC11Q5TAX3 1644 aaKnown RBP24.14■■□□□ 1.46
CCDC40-201ENST00000269318 DNAJC5Q9H3Z4 198 aa24.14■■□□□ 1.45
CCDC40-201ENST00000269318 ACIN1Q9UKV3 1341 aaKnown RBP24.13■■□□□ 1.45
CCDC40-201ENST00000269318 CDC42BPBQ9Y5S2 1711 aa24.13■■□□□ 1.45
CCDC40-201ENST00000269318 SHANK2Q9UPX8 1470 aa24.12■■□□□ 1.45
CCDC40-201ENST00000269318 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP24.12■■□□□ 1.45
CCDC40-201ENST00000269318 TTC37Q6PGP7 1564 aa24.12■■□□□ 1.45
CCDC40-201ENST00000269318 ARHGEF5Q12774 1597 aa24.09■■□□□ 1.45
CCDC40-201ENST00000269318 SAMD9LQ8IVG5 1584 aa24.09■■□□□ 1.45
CCDC40-201ENST00000269318 TRIM52Q96A61 297 aa24.09■■□□□ 1.45
CCDC40-201ENST00000269318 MBD5Q9P267 1494 aa24.08■■□□□ 1.45
CCDC40-201ENST00000269318 ANKRD30AQ9BXX3 1397 aa24.06■■□□□ 1.44
CCDC40-201ENST00000269318 MPHOSPH9Q99550 1183 aa24.05■■□□□ 1.44
CCDC40-201ENST00000269318 C9orf84Q5VXU9 1444 aa24.05■■□□□ 1.44
CCDC40-201ENST00000269318 PPP1R15AO75807 674 aaPredicted RBP24.02■■□□□ 1.44
CCDC40-201ENST00000269318 MYO5CQ9NQX4 1742 aa24.02■■□□□ 1.44
CCDC40-201ENST00000269318 OSCARQ8IYS5 282 aa24.01■■□□□ 1.43
CCDC40-201ENST00000269318 ARHGAP5Q13017 1502 aa24■■□□□ 1.43
CCDC40-201ENST00000269318 TONSLQ96HA7 1378 aa24■■□□□ 1.43
CCDC40-201ENST00000269318 HNRNPMP52272 730 aaKnown RBP eCLIP24■■□□□ 1.43
CCDC40-201ENST00000269318 CCDC141Q6ZP82 1450 aa24■■□□□ 1.43
CCDC40-201ENST00000269318 ANKRD50Q9ULJ7 1429 aa23.97■■□□□ 1.43
CCDC40-201ENST00000269318 PZPP20742 1482 aa23.97■■□□□ 1.43
CCDC40-201ENST00000269318 TSPY4P0CV99 314 aa23.96■■□□□ 1.43
CCDC40-201ENST00000269318 TSPY10P0CW01 314 aa23.96■■□□□ 1.43
CCDC40-201ENST00000269318 RSPH4AQ5TD94 716 aa23.96■■□□□ 1.43
CCDC40-201ENST00000269318 SYCP2Q9BX26 1530 aa23.96■■□□□ 1.43
CCDC40-201ENST00000269318 KCNH8Q96L42 1107 aa23.96■■□□□ 1.43
CCDC40-201ENST00000269318 PLCH2O75038 1416 aa23.95■■□□□ 1.42
CCDC40-201ENST00000269318 KIAA1107Q9UPP5 1409 aa23.95■■□□□ 1.42
CCDC40-201ENST00000269318 PLEKHH2Q8IVE3 1493 aa23.93■■□□□ 1.42
CCDC40-201ENST00000269318 ANKRD30BQ9BXX2 1392 aa23.93■■□□□ 1.42
CCDC40-201ENST00000269318 MAST1Q9Y2H9 1570 aa23.92■■□□□ 1.42
CCDC40-201ENST00000269318 KIF15Q9NS87 1388 aa23.9■■□□□ 1.42
CCDC40-201ENST00000269318 WDR7Q9Y4E6 1490 aa23.9■■□□□ 1.42
CCDC40-201ENST00000269318 FOXD1Q16676 465 aa23.9■■□□□ 1.42
CCDC40-201ENST00000269318 SLC4A1APQ9BWU0 796 aaKnown RBP23.9■■□□□ 1.42
CCDC40-201ENST00000269318 ARAP3Q8WWN8 1544 aa23.88■■□□□ 1.41
CCDC40-201ENST00000269318 ARHGEF12Q9NZN5 1544 aa23.88■■□□□ 1.41
CCDC40-201ENST00000269318 KDM5DQ9BY66 1539 aa23.86■■□□□ 1.41
CCDC40-201ENST00000269318 RPRD2Q5VT52 1461 aaKnown RBP23.86■■□□□ 1.41
CCDC40-201ENST00000269318 ABCC1P33527 1531 aa23.84■■□□□ 1.41
CCDC40-201ENST00000269318 EFCAB2Q5VUJ9 269 aa23.83■■□□□ 1.41
CCDC40-201ENST00000269318 MIER1Q8N108 512 aa23.83■■□□□ 1.41
CCDC40-201ENST00000269318 PLXNC1O60486 1568 aa23.82■■□□□ 1.4
CCDC40-201ENST00000269318 ABCA9Q8IUA7 1624 aa23.8■■□□□ 1.4
CCDC40-201ENST00000269318 ASXL2Q76L83 1435 aa23.79■■□□□ 1.4
CCDC40-201ENST00000269318 NUP155O75694 1391 aa23.78■■□□□ 1.4
CCDC40-201ENST00000269318 TEX14Q8IWB6 1497 aa23.77■■□□□ 1.4
CCDC40-201ENST00000269318 PKD2Q13563 968 aa23.76■■□□□ 1.39
CCDC40-201ENST00000269318 L3MBTL2Q969R5 705 aa23.75■■□□□ 1.39
CCDC40-201ENST00000269318 TRAPPC8Q9Y2L5 1435 aa23.75■■□□□ 1.39
CCDC40-201ENST00000269318 UNC13BO14795 1591 aa23.72■■□□□ 1.39
CCDC40-201ENST00000269318 DUOX2Q9NRD8 1548 aa23.71■■□□□ 1.39
CCDC40-201ENST00000269318 FANCAO15360 1455 aa23.69■■□□□ 1.38
CCDC40-201ENST00000269318 FAM135AQ9P2D6 1515 aa23.69■■□□□ 1.38
CCDC40-201ENST00000269318 ERBINQ96RT1 1412 aa23.67■■□□□ 1.38
CCDC40-201ENST00000269318 RTEL1-TNFRSF6BF6WH68 1400 aa23.66■■□□□ 1.38
CCDC40-201ENST00000269318 NPM1P06748 294 aaKnown RBP eCLIP23.66■■□□□ 1.38
CCDC40-201ENST00000269318 ZFYVE16Q7Z3T8 1539 aa23.65■■□□□ 1.38
CCDC40-201ENST00000269318 MAGI2Q86UL8 1455 aa23.64■■□□□ 1.38
CCDC40-201ENST00000269318 HIRIP3Q9BW71 556 aaPredicted RBP23.64■■□□□ 1.38
CCDC40-201ENST00000269318 IQGAP3Q86VI3 1631 aa23.62■■□□□ 1.37
CCDC40-201ENST00000269318 AFAP1Q8N556 730 aa23.61■■□□□ 1.37
CCDC40-201ENST00000269318 SPAG9O60271 1321 aaKnown RBP23.61■■□□□ 1.37
CCDC40-201ENST00000269318 ADGRL1O94910 1474 aa23.6■■□□□ 1.37
CCDC40-201ENST00000269318 NBPF8Q3BBV2 869 aa23.6■■□□□ 1.37
CCDC40-201ENST00000269318 INO80Q9ULG1 1556 aaPredicted RBP23.6■■□□□ 1.37
CCDC40-201ENST00000269318 SCAPERQ9BY12 1400 aa23.57■■□□□ 1.36
CCDC40-201ENST00000269318 ATP7AQ04656 1500 aa23.56■■□□□ 1.36
CCDC40-201ENST00000269318 DDX10Q13206 875 aaKnown RBP23.55■■□□□ 1.36
CCDC40-201ENST00000269318 HSPA5P11021 654 aaKnown RBP23.53■■□□□ 1.36
CCDC40-201ENST00000269318 CD109Q6YHK3 1445 aa23.52■■□□□ 1.36
CCDC40-201ENST00000269318 GRWD1Q9BQ67 446 aaKnown RBP eCLIP23.52■■□□□ 1.36
CCDC40-201ENST00000269318 EIF4G2P78344 907 aaKnown RBP eCLIP23.51■■□□□ 1.35
CCDC40-201ENST00000269318 PLA2R1Q13018 1463 aa23.51■■□□□ 1.35
CCDC40-201ENST00000269318 CFAP74Q9C0B2 1584 aa23.51■■□□□ 1.35
CCDC40-201ENST00000269318 UHRF1BP1Q6BDS2 1440 aa23.5■■□□□ 1.35
CCDC40-201ENST00000269318 DEPDC5O75140 1603 aa23.49■■□□□ 1.35
CCDC40-201ENST00000269318 CENPBP07199 599 aaPredicted RBP23.48■■□□□ 1.35
CCDC40-201ENST00000269318 ATP10AO60312 1499 aa23.47■■□□□ 1.35
CCDC40-201ENST00000269318 SPATA31E1Q6ZUB1 1445 aa23.46■■□□□ 1.35
CCDC40-201ENST00000269318 RIMBP3CA6NJZ7 1639 aa23.46■■□□□ 1.35
Retrieved 100 of 20,778 RNA–protein pairs in 51.3 ms