RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 CDC42BPAQ5VT25 1732 aa24.23■■□□□ 1.47
USP4-201ENST00000265560 TRIM52Q96A61 297 aa24.23■■□□□ 1.47
USP4-201ENST00000265560 ZCCHC11Q5TAX3 1644 aaKnown RBP24.21■■□□□ 1.47
USP4-201ENST00000265560 ITSN2Q9NZM3 1697 aa24.18■■□□□ 1.46
USP4-201ENST00000265560 KDM6BO15054 1643 aa24.18■■□□□ 1.46
USP4-201ENST00000265560 MAPKBP1O60336 1514 aa24.16■■□□□ 1.46
USP4-201ENST00000265560 TTC37Q6PGP7 1564 aa24.16■■□□□ 1.46
USP4-201ENST00000265560 KDM5BQ9UGL1 1544 aa24.15■■□□□ 1.46
USP4-201ENST00000265560 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP24.14■■□□□ 1.46
USP4-201ENST00000265560 CYB5RLQ6IPT4 315 aa24.14■■□□□ 1.45
USP4-201ENST00000265560 UHRF1BP1LA0JNW5 1464 aa24.13■■□□□ 1.45
USP4-201ENST00000265560 DNMT1P26358 1616 aaKnown RBP24.13■■□□□ 1.45
USP4-201ENST00000265560 FOXD1Q16676 465 aa24.12■■□□□ 1.45
USP4-201ENST00000265560 CLSPNQ9HAW4 1339 aa24.11■■□□□ 1.45
USP4-201ENST00000265560 CDC42BPBQ9Y5S2 1711 aa24.1■■□□□ 1.45
USP4-201ENST00000265560 ARHGAP5Q13017 1502 aa24.09■■□□□ 1.45
USP4-201ENST00000265560 NPM1P06748 294 aaKnown RBP eCLIP24.08■■□□□ 1.45
USP4-201ENST00000265560 TSPY4P0CV99 314 aa24.07■■□□□ 1.44
USP4-201ENST00000265560 TSPY10P0CW01 314 aa24.07■■□□□ 1.44
USP4-201ENST00000265560 AKNAQ7Z591 1439 aa24.06■■□□□ 1.44
USP4-201ENST00000265560 SAMD9LQ8IVG5 1584 aa24.04■■□□□ 1.44
USP4-201ENST00000265560 NCOA1Q15788 1441 aa24.03■■□□□ 1.44
USP4-201ENST00000265560 PREX2Q70Z35 1606 aa24.02■■□□□ 1.44
USP4-201ENST00000265560 ASXL2Q76L83 1435 aa24.02■■□□□ 1.44
USP4-201ENST00000265560 GCC2Q8IWJ2 1684 aa24.01■■□□□ 1.43
USP4-201ENST00000265560 MPHOSPH9Q99550 1183 aa24■■□□□ 1.43
USP4-201ENST00000265560 ROCK1Q13464 1354 aa24■■□□□ 1.43
USP4-201ENST00000265560 WDR7Q9Y4E6 1490 aa24■■□□□ 1.43
USP4-201ENST00000265560 C9orf84Q5VXU9 1444 aa23.99■■□□□ 1.43
USP4-201ENST00000265560 SYCP2Q9BX26 1530 aa23.99■■□□□ 1.43
USP4-201ENST00000265560 MBD5Q9P267 1494 aa23.99■■□□□ 1.43
USP4-201ENST00000265560 EFCAB2Q5VUJ9 269 aa23.98■■□□□ 1.43
USP4-201ENST00000265560 MYO5CQ9NQX4 1742 aa23.98■■□□□ 1.43
USP4-201ENST00000265560 ANKRD30AQ9BXX3 1397 aa23.97■■□□□ 1.43
USP4-201ENST00000265560 PLCH2O75038 1416 aa23.95■■□□□ 1.43
USP4-201ENST00000265560 SLC4A1APQ9BWU0 796 aaKnown RBP23.95■■□□□ 1.42
USP4-201ENST00000265560 AFAP1Q8N556 730 aa23.94■■□□□ 1.42
USP4-201ENST00000265560 ARHGEF12Q9NZN5 1544 aa23.93■■□□□ 1.42
USP4-201ENST00000265560 CROCC2H7BZ55 1655 aa23.93■■□□□ 1.42
USP4-201ENST00000265560 DENND4BO75064 1496 aaPredicted RBP23.93■■□□□ 1.42
USP4-201ENST00000265560 ZNF316A6NFI3 1004 aaPredicted RBP23.92■■□□□ 1.42
USP4-201ENST00000265560 ANKRD50Q9ULJ7 1429 aa23.9■■□□□ 1.42
USP4-201ENST00000265560 KIF15Q9NS87 1388 aa23.9■■□□□ 1.42
USP4-201ENST00000265560 CCDC141Q6ZP82 1450 aa23.9■■□□□ 1.42
USP4-201ENST00000265560 MYT1LQ9UL68 1186 aa23.89■■□□□ 1.41
USP4-201ENST00000265560 ADGBQ8N7X0 1667 aa23.88■■□□□ 1.41
USP4-201ENST00000265560 TRAPPC8Q9Y2L5 1435 aa23.87■■□□□ 1.41
USP4-201ENST00000265560 GRWD1Q9BQ67 446 aaKnown RBP eCLIP23.87■■□□□ 1.417e-6■□□□□ 10.8
USP4-201ENST00000265560 ADGRL2O95490 1459 aa23.86■■□□□ 1.41
USP4-201ENST00000265560 RIMBP3CA6NJZ7 1639 aa23.85■■□□□ 1.41
USP4-201ENST00000265560 RIMBP3BA6NNM3 1639 aa23.85■■□□□ 1.41
USP4-201ENST00000265560 RIMBP3Q9UFD9 1639 aa23.85■■□□□ 1.41
USP4-201ENST00000265560 ARHGEF5Q12774 1597 aa23.84■■□□□ 1.41
USP4-201ENST00000265560 RSPH4AQ5TD94 716 aa23.83■■□□□ 1.4
USP4-201ENST00000265560 NUP155O75694 1391 aa23.83■■□□□ 1.4
USP4-201ENST00000265560 FANCAO15360 1455 aa23.82■■□□□ 1.4
USP4-201ENST00000265560 TONSLQ96HA7 1378 aa23.82■■□□□ 1.4
USP4-201ENST00000265560 DIEXFQ68CQ4 756 aaKnown RBP23.82■■□□□ 1.4
USP4-201ENST00000265560 PKD2Q13563 968 aa23.81■■□□□ 1.4
USP4-201ENST00000265560 SHANK2Q9UPX8 1470 aa23.81■■□□□ 1.4
USP4-201ENST00000265560 HIRIP3Q9BW71 556 aaPredicted RBP23.81■■□□□ 1.4
USP4-201ENST00000265560 KIAA1107Q9UPP5 1409 aa23.78■■□□□ 1.4
USP4-201ENST00000265560 SPAG9O60271 1321 aaKnown RBP23.77■■□□□ 1.4
USP4-201ENST00000265560 PZPP20742 1482 aa23.77■■□□□ 1.4
USP4-201ENST00000265560 PPP1R15AO75807 674 aaPredicted RBP23.77■■□□□ 1.4
USP4-201ENST00000265560 ABCA9Q8IUA7 1624 aa23.77■■□□□ 1.4
USP4-201ENST00000265560 ABCC1P33527 1531 aa23.76■■□□□ 1.39
USP4-201ENST00000265560 CD109Q6YHK3 1445 aa23.75■■□□□ 1.39
USP4-201ENST00000265560 SCAPERQ9BY12 1400 aa23.75■■□□□ 1.39
USP4-201ENST00000265560 PLEKHH2Q8IVE3 1493 aa23.75■■□□□ 1.39
USP4-201ENST00000265560 ADGRL1O94910 1474 aa23.73■■□□□ 1.39
USP4-201ENST00000265560 ANKRD30BQ9BXX2 1392 aa23.71■■□□□ 1.39
USP4-201ENST00000265560 L3MBTL2Q969R5 705 aa23.7■■□□□ 1.38
USP4-201ENST00000265560 RAPGEF3O95398 923 aa23.67■■□□□ 1.38
USP4-201ENST00000265560 FAM69CQ0P6D2 419 aa23.67■■□□□ 1.38
USP4-201ENST00000265560 TIMELESSQ9UNS1 1208 aa23.65■■□□□ 1.38
USP4-201ENST00000265560 ARAP3Q8WWN8 1544 aa23.63■■□□□ 1.37
USP4-201ENST00000265560 MAST1Q9Y2H9 1570 aa23.62■■□□□ 1.37
USP4-201ENST00000265560 ZNF326Q5BKZ1 582 aaKnown RBP23.61■■□□□ 1.37
USP4-201ENST00000265560 KIF3BO15066 747 aa23.59■■□□□ 1.37
USP4-201ENST00000265560 ZFYVE16Q7Z3T8 1539 aa23.57■■□□□ 1.36
USP4-201ENST00000265560 DUOX2Q9NRD8 1548 aa23.56■■□□□ 1.36
USP4-201ENST00000265560 PLXNC1O60486 1568 aa23.56■■□□□ 1.36
USP4-201ENST00000265560 FAM135AQ9P2D6 1515 aa23.56■■□□□ 1.36
USP4-201ENST00000265560 ACIN1Q9UKV3 1341 aaKnown RBP23.56■■□□□ 1.36
USP4-201ENST00000265560 RPRD2Q5VT52 1461 aaKnown RBP23.55■■□□□ 1.36
USP4-201ENST00000265560 TSPOAP1O95153 1857 aa23.55■■□□□ 1.36
USP4-201ENST00000265560 ATP7AQ04656 1500 aa23.54■■□□□ 1.36
USP4-201ENST00000265560 NBPF8Q3BBV2 869 aa23.54■■□□□ 1.36
USP4-201ENST00000265560 KDM2AQ9Y2K7 1162 aa23.53■■□□□ 1.36
USP4-201ENST00000265560 RGL3Q3MIN7 710 aa23.52■■□□□ 1.36
USP4-201ENST00000265560 MIER1Q8N108 512 aa23.5■■□□□ 1.35
USP4-201ENST00000265560 RTEL1-TNFRSF6BF6WH68 1400 aa23.5■■□□□ 1.35
USP4-201ENST00000265560 ERBINQ96RT1 1412 aa23.49■■□□□ 1.35
USP4-201ENST00000265560 ZNF518AQ6AHZ1 1483 aa23.48■■□□□ 1.35
USP4-201ENST00000265560 KDM5DQ9BY66 1539 aa23.47■■□□□ 1.35
USP4-201ENST00000265560 GGT6Q6P531 493 aa23.47■■□□□ 1.35
USP4-201ENST00000265560 INO80Q9ULG1 1556 aaPredicted RBP23.47■■□□□ 1.35
USP4-201ENST00000265560 POGZQ7Z3K3 1410 aa23.46■■□□□ 1.35
USP4-201ENST00000265560 KIDINS220Q9ULH0 1771 aa23.46■■□□□ 1.35
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms