RNA–Protein interactions for RNA: ENST00000242776.8

DDX39A-201, Transcript of DExD-box helicase 39A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene DDX39A, Length 1,471 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX39A-201ENST00000242776 SCAPERQ9BY12 1400 aa23.06■■□□□ 1.28
DDX39A-201ENST00000242776 EEA1Q15075 1411 aa23.05■■□□□ 1.28
DDX39A-201ENST00000242776 CERKQ8TCT0 537 aa23.02■■□□□ 1.28
DDX39A-201ENST00000242776 MAGI2Q86UL8 1455 aa23.01■■□□□ 1.27
DDX39A-201ENST00000242776 CEBPAP49715 358 aaPredicted RBP23■■□□□ 1.27
DDX39A-201ENST00000242776 MYO5CQ9NQX4 1742 aa23■■□□□ 1.27
DDX39A-201ENST00000242776 PLCH2O75038 1416 aa22.99■■□□□ 1.27
DDX39A-201ENST00000242776 MYT1LQ9UL68 1186 aa22.98■■□□□ 1.27
DDX39A-201ENST00000242776 ATP10AO60312 1499 aa22.96■■□□□ 1.27
DDX39A-201ENST00000242776 KIF14Q15058 1648 aa22.95■■□□□ 1.26
DDX39A-201ENST00000242776 PREX1Q8TCU6 1659 aa22.95■■□□□ 1.26
DDX39A-201ENST00000242776 UBTFP17480 764 aaKnown RBP22.95■■□□□ 1.26
DDX39A-201ENST00000242776 C9orf84Q5VXU9 1444 aa22.94■■□□□ 1.26
DDX39A-201ENST00000242776 ARHGEF12Q9NZN5 1544 aa22.94■■□□□ 1.26
DDX39A-201ENST00000242776 EFCAB2Q5VUJ9 269 aa22.93■■□□□ 1.26
DDX39A-201ENST00000242776 ARHGAP5Q13017 1502 aa22.9■■□□□ 1.26
DDX39A-201ENST00000242776 AFAP1Q8N556 730 aa22.89■■□□□ 1.25
DDX39A-201ENST00000242776 STRCQ7RTU9 1775 aa22.87■■□□□ 1.25
DDX39A-201ENST00000242776 CDK11AQ9UQ88 783 aaPredicted RBP22.85■■□□□ 1.25
DDX39A-201ENST00000242776 FMN1Q68DA7 1419 aa22.85■■□□□ 1.25
DDX39A-201ENST00000242776 LRRIQ1Q96JM4 1722 aa22.85■■□□□ 1.25
DDX39A-201ENST00000242776 ARHGAP35Q9NRY4 1499 aa22.85■■□□□ 1.25
DDX39A-201ENST00000242776 ZNF518AQ6AHZ1 1483 aa22.84■■□□□ 1.25
DDX39A-201ENST00000242776 UHRF1BP1Q6BDS2 1440 aa22.82■■□□□ 1.24
DDX39A-201ENST00000242776 DIP2CQ9Y2E4 1556 aa22.81■■□□□ 1.24
DDX39A-201ENST00000242776 CDC42BPBQ9Y5S2 1711 aa22.81■■□□□ 1.24
DDX39A-201ENST00000242776 TROQ12816 1431 aaPredicted RBP22.81■■□□□ 1.24
DDX39A-201ENST00000242776 ABCA6Q8N139 1617 aa22.8■■□□□ 1.24
DDX39A-201ENST00000242776 KDM5CP41229 1560 aa22.8■■□□□ 1.24
DDX39A-201ENST00000242776 DISP3Q9P2K9 1392 aa22.8■■□□□ 1.24
DDX39A-201ENST00000242776 CLIP1P30622 1438 aa22.79■■□□□ 1.24
DDX39A-201ENST00000242776 C3P01024 1663 aa22.79■■□□□ 1.24
DDX39A-201ENST00000242776 SETD1BQ9UPS6 1966 aaKnown RBP22.78■■□□□ 1.24
DDX39A-201ENST00000242776 DMRT2Q9Y5R5 561 aa22.77■■□□□ 1.24
DDX39A-201ENST00000242776 ILDR2Q71H61 639 aa22.76■■□□□ 1.23
DDX39A-201ENST00000242776 ESF1Q9H501 851 aaKnown RBP22.76■■□□□ 1.23
DDX39A-201ENST00000242776 TRAPPC8Q9Y2L5 1435 aa22.73■■□□□ 1.23
DDX39A-201ENST00000242776 ITSN2Q9NZM3 1697 aa22.72■■□□□ 1.23
DDX39A-201ENST00000242776 PREX2Q70Z35 1606 aa22.71■■□□□ 1.23
DDX39A-201ENST00000242776 ABCC1P33527 1531 aa22.69■■□□□ 1.22
DDX39A-201ENST00000242776 REREQ9P2R6 1566 aa22.69■■□□□ 1.22
DDX39A-201ENST00000242776 MLH3Q9UHC1 1453 aa22.69■■□□□ 1.22
DDX39A-201ENST00000242776 ZNF777Q9ULD5 760 aaPredicted RBP22.67■■□□□ 1.22
DDX39A-201ENST00000242776 KIDINS220Q9ULH0 1771 aa22.67■■□□□ 1.22
DDX39A-201ENST00000242776 CDC42BPAQ5VT25 1732 aa22.66■■□□□ 1.22
DDX39A-201ENST00000242776 PTPRTO14522 1441 aa22.64■■□□□ 1.21
DDX39A-201ENST00000242776 AGLP35573 1532 aa22.64■■□□□ 1.21
DDX39A-201ENST00000242776 SUPT6HQ7KZ85 1726 aaKnown RBP22.62■■□□□ 1.21
DDX39A-201ENST00000242776 SPATA31D1Q6ZQQ2 1576 aa22.62■■□□□ 1.21
DDX39A-201ENST00000242776 LTBP4Q8N2S1 1624 aa22.6■■□□□ 1.21
DDX39A-201ENST00000242776 CCDC18Q5T9S5 1454 aa22.6■■□□□ 1.21
DDX39A-201ENST00000242776 SOCS7O14512 581 aa22.59■■□□□ 1.21
DDX39A-201ENST00000242776 NCOA1Q15788 1441 aa22.58■■□□□ 1.21
DDX39A-201ENST00000242776 CAMSAP1Q5T5Y3 1602 aa22.58■■□□□ 1.2
DDX39A-201ENST00000242776 CASKIN1Q8WXD9 1431 aa22.58■■□□□ 1.2
DDX39A-201ENST00000242776 SAMD9LQ8IVG5 1584 aa22.57■■□□□ 1.2
DDX39A-201ENST00000242776 CHIC1Q5VXU3 224 aa22.57■■□□□ 1.2
DDX39A-201ENST00000242776 NCKAP5LQ9HCH0 1330 aa22.57■■□□□ 1.2
DDX39A-201ENST00000242776 SYCP2Q9BX26 1530 aa22.56■■□□□ 1.2
DDX39A-201ENST00000242776 HNRNPMP52272 730 aaKnown RBP eCLIP22.56■■□□□ 1.25e-8■■■■□ 23.8
DDX39A-201ENST00000242776 CNTLNQ9NXG0 1405 aa22.56■■□□□ 1.2
DDX39A-201ENST00000242776 CLTCQ00610 1675 aaKnown RBP22.55■■□□□ 1.2
DDX39A-201ENST00000242776 SPAG9O60271 1321 aaKnown RBP22.53■■□□□ 1.2
DDX39A-201ENST00000242776 MROH2AA6NES4 1674 aa22.53■■□□□ 1.2
DDX39A-201ENST00000242776 ZMYM3Q14202 1370 aa22.52■■□□□ 1.2
DDX39A-201ENST00000242776 ZNF335Q9H4Z2 1342 aaPredicted RBP22.51■■□□□ 1.19
DDX39A-201ENST00000242776 GGT6Q6P531 493 aa22.48■■□□□ 1.19
DDX39A-201ENST00000242776 ATP7AQ04656 1500 aa22.48■■□□□ 1.19
DDX39A-201ENST00000242776 GPATCH8Q9UKJ3 1502 aaKnown RBP22.48■■□□□ 1.19
DDX39A-201ENST00000242776 NPATQ14207 1427 aa22.48■■□□□ 1.19
DDX39A-201ENST00000242776 MYO3AQ8NEV4 1616 aa22.47■■□□□ 1.19
DDX39A-201ENST00000242776 FYCO1Q9BQS8 1478 aa22.47■■□□□ 1.19
DDX39A-201ENST00000242776 UBAP1LF5GYI3 381 aa22.46■■□□□ 1.19
DDX39A-201ENST00000242776 IQSEC2Q5JU85 1478 aa22.45■■□□□ 1.18
DDX39A-201ENST00000242776 CFDP1Q9UEE9 299 aaPredicted RBP22.44■■□□□ 1.18
DDX39A-201ENST00000242776 A2MP01023 1474 aa22.43■■□□□ 1.18
DDX39A-201ENST00000242776 INO80Q9ULG1 1556 aaPredicted RBP22.43■■□□□ 1.18
DDX39A-201ENST00000242776 ZNF142P52746 1687 aaPredicted RBP22.42■■□□□ 1.18
DDX39A-201ENST00000242776 CEP170BQ9Y4F5 1589 aaPredicted RBP22.41■■□□□ 1.18
DDX39A-201ENST00000242776 CCNB3Q8WWL7 1395 aa22.4■■□□□ 1.18
DDX39A-201ENST00000242776 PLXNC1O60486 1568 aa22.4■■□□□ 1.18
DDX39A-201ENST00000242776 PTPRKQ15262 1439 aa22.39■■□□□ 1.17
DDX39A-201ENST00000242776 ZNF644Q9H582 1327 aaPredicted RBP22.37■■□□□ 1.17
DDX39A-201ENST00000242776 SCAF1Q9H7N4 1312 aaKnown RBP22.37■■□□□ 1.17
DDX39A-201ENST00000242776 PKD2Q13563 968 aa22.36■■□□□ 1.17
DDX39A-201ENST00000242776 ADGBQ8N7X0 1667 aa22.36■■□□□ 1.17
DDX39A-201ENST00000242776 PLEKHH2Q8IVE3 1493 aa22.36■■□□□ 1.17
DDX39A-201ENST00000242776 MTUS2Q5JR59 1369 aa22.35■■□□□ 1.17
DDX39A-201ENST00000242776 PPP6R1Q9UPN7 881 aa22.34■■□□□ 1.17
DDX39A-201ENST00000242776 KIAA1107Q9UPP5 1409 aa22.34■■□□□ 1.17
DDX39A-201ENST00000242776 PLA2R1Q13018 1463 aa22.34■■□□□ 1.17
DDX39A-201ENST00000242776 TCOF1Q13428 1488 aaKnown RBP22.33■■□□□ 1.16
DDX39A-201ENST00000242776 PIP4K2BP78356 416 aa22.31■■□□□ 1.16
DDX39A-201ENST00000242776 DNMT1P26358 1616 aaKnown RBP22.3■■□□□ 1.16
DDX39A-201ENST00000242776 TIAM1Q13009 1591 aa22.29■■□□□ 1.16
DDX39A-201ENST00000242776 POLR1AO95602 1720 aaPredicted RBP22.28■■□□□ 1.16
DDX39A-201ENST00000242776 FBXO31Q5XUX0 539 aaPredicted RBP22.28■■□□□ 1.16
DDX39A-201ENST00000242776 A2ML1A8K2U0 1454 aa22.27■■□□□ 1.16
DDX39A-201ENST00000242776 KIF3BO15066 747 aa22.24■■□□□ 1.15
DDX39A-201ENST00000242776 HSPA1LP34931 641 aa22.24■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms