RNA–Protein interactions for RNA: ENST00000237186.10

UBE3D-201, Transcript of ubiquitin protein ligase E3D, humanhuman

TSL 1 (best)

Gene UBE3D, Length 1,879 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3D-201ENST00000237186 MPHOSPH9Q99550 1183 aa23.06■■□□□ 1.28
UBE3D-201ENST00000237186 KDM6BO15054 1643 aa23.05■■□□□ 1.28
UBE3D-201ENST00000237186 ADCY10Q96PN6 1610 aa23.05■■□□□ 1.28
UBE3D-201ENST00000237186 KDM5BQ9UGL1 1544 aa23.05■■□□□ 1.28
UBE3D-201ENST00000237186 ZNF644Q9H582 1327 aaPredicted RBP23.05■■□□□ 1.28
UBE3D-201ENST00000237186 ABCA8O94911 1581 aa23.05■■□□□ 1.28
UBE3D-201ENST00000237186 TRIM52Q96A61 297 aa23.05■■□□□ 1.28
UBE3D-201ENST00000237186 CFDP1Q9UEE9 299 aaPredicted RBP23.02■■□□□ 1.28
UBE3D-201ENST00000237186 CAMSAP2Q08AD1 1489 aa22.99■■□□□ 1.27
UBE3D-201ENST00000237186 ITSN2Q9NZM3 1697 aa22.99■■□□□ 1.27
UBE3D-201ENST00000237186 SHROOM2Q13796 1616 aa22.98■■□□□ 1.27
UBE3D-201ENST00000237186 PLEKHD1A6NEE1 506 aa22.98■■□□□ 1.27
UBE3D-201ENST00000237186 DDX10Q13206 875 aaKnown RBP22.98■■□□□ 1.27
UBE3D-201ENST00000237186 ATP10BO94823 1461 aa22.98■■□□□ 1.27
UBE3D-201ENST00000237186 NCOA1Q15788 1441 aa22.96■■□□□ 1.27
UBE3D-201ENST00000237186 ADGRL2O95490 1459 aa22.95■■□□□ 1.27
UBE3D-201ENST00000237186 ANKRD30BQ9BXX2 1392 aa22.95■■□□□ 1.26
UBE3D-201ENST00000237186 KIF14Q15058 1648 aa22.95■■□□□ 1.26
UBE3D-201ENST00000237186 PTPRGP23470 1445 aa22.94■■□□□ 1.26
UBE3D-201ENST00000237186 ABCC10Q5T3U5 1492 aa22.94■■□□□ 1.26
UBE3D-201ENST00000237186 CLASP1Q7Z460 1538 aa22.92■■□□□ 1.26
UBE3D-201ENST00000237186 RPRD2Q5VT52 1461 aaKnown RBP22.88■■□□□ 1.25
UBE3D-201ENST00000237186 HIRIP3Q9BW71 556 aaPredicted RBP22.88■■□□□ 1.25
UBE3D-201ENST00000237186 ANKRD30AQ9BXX3 1397 aa22.86■■□□□ 1.25
UBE3D-201ENST00000237186 ERCC6L2Q5T890 1561 aa22.86■■□□□ 1.25
UBE3D-201ENST00000237186 CCER2I3L3R5 266 aa22.85■■□□□ 1.25
UBE3D-201ENST00000237186 L3MBTL2Q969R5 705 aa22.85■■□□□ 1.25
UBE3D-201ENST00000237186 SLC4A1APQ9BWU0 796 aaKnown RBP22.85■■□□□ 1.25
UBE3D-201ENST00000237186 SHANK2Q9UPX8 1470 aa22.84■■□□□ 1.25
UBE3D-201ENST00000237186 ZNF777Q9ULD5 760 aaPredicted RBP22.84■■□□□ 1.25
UBE3D-201ENST00000237186 PZPP20742 1482 aa22.84■■□□□ 1.25
UBE3D-201ENST00000237186 ADGBQ8N7X0 1667 aa22.83■■□□□ 1.25
UBE3D-201ENST00000237186 FOXD1Q16676 465 aa22.83■■□□□ 1.24
UBE3D-201ENST00000237186 CROCC2H7BZ55 1655 aa22.82■■□□□ 1.24
UBE3D-201ENST00000237186 PELP1Q8IZL8 1130 aaKnown RBP22.81■■□□□ 1.24
UBE3D-201ENST00000237186 KCNH8Q96L42 1107 aa22.8■■□□□ 1.24
UBE3D-201ENST00000237186 CDC42BPAQ5VT25 1732 aa22.8■■□□□ 1.24
UBE3D-201ENST00000237186 ANP32CO43423 234 aa22.79■■□□□ 1.24
UBE3D-201ENST00000237186 TEX14Q8IWB6 1497 aa22.78■■□□□ 1.24
UBE3D-201ENST00000237186 EIF4G2P78344 907 aaKnown RBP eCLIP22.77■■□□□ 1.24
UBE3D-201ENST00000237186 ANKRD50Q9ULJ7 1429 aa22.77■■□□□ 1.24
UBE3D-201ENST00000237186 HSPA5P11021 654 aaKnown RBP22.77■■□□□ 1.24
UBE3D-201ENST00000237186 C9orf84Q5VXU9 1444 aa22.75■■□□□ 1.23
UBE3D-201ENST00000237186 KIAA1107Q9UPP5 1409 aa22.75■■□□□ 1.23
UBE3D-201ENST00000237186 ARHGEF5Q12774 1597 aa22.74■■□□□ 1.23
UBE3D-201ENST00000237186 RSPH4AQ5TD94 716 aa22.74■■□□□ 1.23
UBE3D-201ENST00000237186 MBD5Q9P267 1494 aa22.74■■□□□ 1.23
UBE3D-201ENST00000237186 TSPY4P0CV99 314 aa22.73■■□□□ 1.23
UBE3D-201ENST00000237186 TSPY10P0CW01 314 aa22.73■■□□□ 1.23
UBE3D-201ENST00000237186 ABCC2Q92887 1545 aa22.71■■□□□ 1.23
UBE3D-201ENST00000237186 WASHC2AQ641Q2 1341 aa22.71■■□□□ 1.23
UBE3D-201ENST00000237186 NBPF8Q3BBV2 869 aa22.7■■□□□ 1.22
UBE3D-201ENST00000237186 KDM5DQ9BY66 1539 aa22.68■■□□□ 1.22
UBE3D-201ENST00000237186 PKD2Q13563 968 aa22.67■■□□□ 1.22
UBE3D-201ENST00000237186 HNRNPMP52272 730 aaKnown RBP eCLIP22.66■■□□□ 1.22
UBE3D-201ENST00000237186 SPATA31E1Q6ZUB1 1445 aa22.65■■□□□ 1.22
UBE3D-201ENST00000237186 CCDC141Q6ZP82 1450 aa22.65■■□□□ 1.22
UBE3D-201ENST00000237186 PREX2Q70Z35 1606 aa22.64■■□□□ 1.22
UBE3D-201ENST00000237186 OSCARQ8IYS5 282 aa22.64■■□□□ 1.21
UBE3D-201ENST00000237186 NUP155O75694 1391 aa22.64■■□□□ 1.21
UBE3D-201ENST00000237186 KIF15Q9NS87 1388 aa22.64■■□□□ 1.21
UBE3D-201ENST00000237186 UHRF1BP1LA0JNW5 1464 aa22.63■■□□□ 1.21
UBE3D-201ENST00000237186 SAMD9LQ8IVG5 1584 aa22.62■■□□□ 1.21
UBE3D-201ENST00000237186 CDC42BPBQ9Y5S2 1711 aa22.6■■□□□ 1.21
UBE3D-201ENST00000237186 CCDC7Q96M83 1385 aa22.59■■□□□ 1.21
UBE3D-201ENST00000237186 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP22.58■■□□□ 1.21
UBE3D-201ENST00000237186 CNTLNQ9NXG0 1405 aa22.57■■□□□ 1.2
UBE3D-201ENST00000237186 C11orf95C9JLR9 678 aaPredicted RBP22.56■■□□□ 1.2
UBE3D-201ENST00000237186 MAST1Q9Y2H9 1570 aa22.56■■□□□ 1.2
UBE3D-201ENST00000237186 UHRF1BP1Q6BDS2 1440 aa22.55■■□□□ 1.2
UBE3D-201ENST00000237186 PLEKHH2Q8IVE3 1493 aa22.55■■□□□ 1.2
UBE3D-201ENST00000237186 SUPT16HQ9Y5B9 1047 aaKnown RBP22.55■■□□□ 1.2
UBE3D-201ENST00000237186 ZCCHC11Q5TAX3 1644 aaKnown RBP22.55■■□□□ 1.2
UBE3D-201ENST00000237186 TTC37Q6PGP7 1564 aa22.54■■□□□ 1.2
UBE3D-201ENST00000237186 ARHGAP5Q13017 1502 aa22.51■■□□□ 1.19
UBE3D-201ENST00000237186 ARHGEF12Q9NZN5 1544 aa22.51■■□□□ 1.19
UBE3D-201ENST00000237186 SYCP2Q9BX26 1530 aa22.5■■□□□ 1.19
UBE3D-201ENST00000237186 PLCH2O75038 1416 aa22.49■■□□□ 1.19
UBE3D-201ENST00000237186 KIF7Q2M1P5 1343 aa22.48■■□□□ 1.19
UBE3D-201ENST00000237186 ARID4BQ4LE39 1312 aaPredicted RBP22.46■■□□□ 1.19
UBE3D-201ENST00000237186 FAM135AQ9P2D6 1515 aa22.46■■□□□ 1.19
UBE3D-201ENST00000237186 RALGAPBQ86X10 1494 aa22.44■■□□□ 1.18
UBE3D-201ENST00000237186 PRKRIP1Q9H875 184 aaPredicted RBP22.43■■□□□ 1.18
UBE3D-201ENST00000237186 PLXNC1O60486 1568 aa22.43■■□□□ 1.18
UBE3D-201ENST00000237186 MYO5CQ9NQX4 1742 aa22.43■■□□□ 1.18
UBE3D-201ENST00000237186 USP47Q96K76 1375 aa22.43■■□□□ 1.18
UBE3D-201ENST00000237186 EFCAB2Q5VUJ9 269 aa22.43■■□□□ 1.18
UBE3D-201ENST00000237186 UNC13BO14795 1591 aa22.41■■□□□ 1.18
UBE3D-201ENST00000237186 POLR1AO95602 1720 aaPredicted RBP22.4■■□□□ 1.18
UBE3D-201ENST00000237186 DUOX2Q9NRD8 1548 aa22.38■■□□□ 1.17
UBE3D-201ENST00000237186 KDM5CP41229 1560 aa22.38■■□□□ 1.17
UBE3D-201ENST00000237186 ERBINQ96RT1 1412 aa22.37■■□□□ 1.17
UBE3D-201ENST00000237186 ARAP3Q8WWN8 1544 aa22.37■■□□□ 1.17
UBE3D-201ENST00000237186 MAGI2Q86UL8 1455 aa22.35■■□□□ 1.17
UBE3D-201ENST00000237186 WDR7Q9Y4E6 1490 aa22.35■■□□□ 1.17
UBE3D-201ENST00000237186 ZNF326Q5BKZ1 582 aaKnown RBP22.35■■□□□ 1.17
UBE3D-201ENST00000237186 PLA2R1Q13018 1463 aa22.34■■□□□ 1.17
UBE3D-201ENST00000237186 ABCC1P33527 1531 aa22.34■■□□□ 1.17
UBE3D-201ENST00000237186 ATP10AO60312 1499 aa22.34■■□□□ 1.17
UBE3D-201ENST00000237186 CCDC144AA2RUR9 1427 aa22.34■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms