RNA–Protein interactions for RNA: YMR153W

NUP53, Transcript of FG-nucleoporin component of central core of nuclear pore complex (NPC), yeast

Gene NUP53, Length 1,428 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
NUP53	YMR153W	RRN10	P38204	145 aa		7.38	□□□□□ -1.23
NUP53	YMR153W	PHO89	P38361	574 aa		7.38	□□□□□ -1.23
NUP53	YMR153W	UTP9	P38882	575 aa	Known RBP	7.38	□□□□□ -1.23
NUP53	YMR153W	AZF1	P41696	914 aa		7.38	□□□□□ -1.23
NUP53	YMR153W	IBA57	P47158	497 aa		7.38	□□□□□ -1.23
NUP53	YMR153W	EFM5	P53200	248 aa	Known RBP	7.38	□□□□□ -1.23
NUP53	YMR153W	RMI1	Q02685	241 aa		7.38	□□□□□ -1.23
NUP53	YMR153W	RNY1	Q02933	434 aa	Known RBP	7.38	□□□□□ -1.23
NUP53	YMR153W	HOS3	Q02959	697 aa	Known RBP	7.38	□□□□□ -1.23
NUP53	YMR153W	ROY1	Q04847	553 aa		7.38	□□□□□ -1.23
NUP53	YMR153W	VID22	Q05934	901 aa		7.38	□□□□□ -1.23
NUP53	YMR153W	RIF2	Q06208	395 aa		7.38	□□□□□ -1.23
NUP53	YMR153W	SEC10	Q06245	871 aa		7.38	□□□□□ -1.23
NUP53	YMR153W	IRC13	Q08630	104 aa		7.38	□□□□□ -1.23
NUP53	YMR153W	YPL247C	Q12523	523 aa		7.38	□□□□□ -1.23
NUP53	YMR153W	YCR090C	P25654	182 aa	Known RBP	7.37	□□□□□ -1.23
NUP53	YMR153W	MCM5	P29496	775 aa	Known RBP	7.37	□□□□□ -1.23
NUP53	YMR153W	FTH1	P38310	465 aa		7.37	□□□□□ -1.23
NUP53	YMR153W	MET30	P39014	640 aa		7.37	□□□□□ -1.23
NUP53	YMR153W	PTC2	P39966	464 aa	Known RBP	7.37	□□□□□ -1.23
NUP53	YMR153W	AXL1	P40851	1208 aa		7.37	□□□□□ -1.23
NUP53	YMR153W	CEP3	P40969	608 aa		7.37	□□□□□ -1.23
NUP53	YMR153W	ASK10	P48361	1146 aa		7.37	□□□□□ -1.23
NUP53	YMR153W	SED5	Q01590	340 aa		7.37	□□□□□ -1.23
NUP53	YMR153W	YMR155W	Q03795	547 aa		7.37	□□□□□ -1.23
NUP53	YMR153W	IOC2	Q12072	812 aa		7.37	□□□□□ -1.23
NUP53	YMR153W	RUD3	Q12234	484 aa	Known RBP	7.37	□□□□□ -1.23
NUP53	YMR153W	GUK1	P15454	187 aa	Known RBP	7.36	□□□□□ -1.23
NUP53	YMR153W	SEC15	P22224	910 aa		7.36	□□□□□ -1.23
NUP53	YMR153W	ILV6	P25605	309 aa	Known RBP	7.36	□□□□□ -1.23
NUP53	YMR153W	ADE1	P27616	306 aa		7.36	□□□□□ -1.23
NUP53	YMR153W	HXT4	P32467	576 aa		7.36	□□□□□ -1.23
NUP53	YMR153W	SRB5	P32585	307 aa		7.36	□□□□□ -1.23
NUP53	YMR153W	APT2	P36973	181 aa		7.36	□□□□□ -1.23
NUP53	YMR153W	MNL1	P38888	796 aa		7.36	□□□□□ -1.23
NUP53	YMR153W	YHR210C	P38893	341 aa		7.36	□□□□□ -1.23
NUP53	YMR153W	GGC1	P38988	300 aa		7.36	□□□□□ -1.23
NUP53	YMR153W	HXT6	P39003	570 aa	Known RBP	7.36	□□□□□ -1.23
NUP53	YMR153W	HXT7	P39004	570 aa		7.36	□□□□□ -1.23
NUP53	YMR153W	CAB2	P40506	365 aa		7.36	□□□□□ -1.23
NUP53	YMR153W	PRM2	P40534	656 aa		7.36	□□□□□ -1.23
NUP53	YMR153W	AIF1	P52923	378 aa		7.36	□□□□□ -1.23
NUP53	YMR153W	GIC2	Q06648	383 aa		7.36	□□□□□ -1.23
NUP53	YMR153W	RAD34	Q06665	692 aa		7.36	□□□□□ -1.23
NUP53	YMR153W	RPS21A	P0C0V8	87 aa	Known RBP	7.35	□□□□□ -1.23
NUP53	YMR153W	SIN4	P32259	974 aa		7.35	□□□□□ -1.23
NUP53	YMR153W	CBF5	P33322	483 aa	Known RBP RIP-Chip data	7.35	□□□□□ -1.23	not detected
NUP53	YMR153W	YRO2	P38079	344 aa		7.35	□□□□□ -1.23
NUP53	YMR153W	YIL086C	P40503	102 aa		7.35	□□□□□ -1.23
NUP53	YMR153W	MNT3	P40549	630 aa		7.35	□□□□□ -1.23
NUP53	YMR153W	VMA13	P41807	478 aa	Known RBP	7.35	□□□□□ -1.23
NUP53	YMR153W	YGR250C	P53316	781 aa	Known RBP	7.35	□□□□□ -1.23
NUP53	YMR153W	LSC1	P53598	329 aa	Known RBP	7.35	□□□□□ -1.23
NUP53	YMR153W	IST1	P53843	298 aa	Predicted RBP	7.35	□□□□□ -1.23
NUP53	YMR153W	USA1	Q03714	838 aa		7.35	□□□□□ -1.23
NUP53	YMR153W	APC9	Q12107	265 aa		7.35	□□□□□ -1.23
NUP53	YMR153W	YPL245W	Q12179	454 aa	Known RBP	7.35	□□□□□ -1.23
NUP53	YMR153W	SLH1	P53327	1967 aa	Known RBP	7.35	□□□□□ -1.23
NUP53	YMR153W	PRP8	P33334	2413 aa	Known RBP	7.35	□□□□□ -1.23
NUP53	YMR153W	NMT1	P14743	455 aa		7.35	□□□□□ -1.23
NUP53	YMR153W	ART10	P18634	518 aa	Known RBP	7.35	□□□□□ -1.23
NUP53	YMR153W	PRP2	P20095	876 aa	Predicted RBP	7.35	□□□□□ -1.23
NUP53	YMR153W	LDB16	P25587	256 aa		7.35	□□□□□ -1.23
NUP53	YMR153W	KKQ8	P36004	724 aa		7.35	□□□□□ -1.23
NUP53	YMR153W	DMA1	P38823	416 aa		7.35	□□□□□ -1.23
NUP53	YMR153W	ENT2	Q05785	613 aa		7.35	□□□□□ -1.23
NUP53	YMR153W	YPR022C	Q12139	1133 aa		7.35	□□□□□ -1.23
NUP53	YMR153W	AXL2	P38928	823 aa		7.34	□□□□□ -1.23
NUP53	YMR153W	PTI1	P39927	425 aa	Predicted RBP	7.34	□□□□□ -1.23
NUP53	YMR153W	COA1	P40452	197 aa		7.34	□□□□□ -1.23
NUP53	YMR153W	APQ12	P40532	138 aa		7.34	□□□□□ -1.23
NUP53	YMR153W	PAN2	P53010	1115 aa	Predicted RBP	7.34	□□□□□ -1.23
NUP53	YMR153W	MRS2	Q01926	470 aa		7.34	□□□□□ -1.23
NUP53	YMR153W	ELP4	Q02884	456 aa	Known RBP	7.34	□□□□□ -1.23
NUP53	YMR153W	PEX25	Q02969	394 aa		7.34	□□□□□ -1.23
NUP53	YMR153W	TEN1	Q07921	160 aa		7.34	□□□□□ -1.23
NUP53	YMR153W	AHA1	Q12449	350 aa	Known RBP	7.34	□□□□□ -1.23
NUP53	YMR153W	FAS1	P07149	2051 aa	Known RBP	7.33	□□□□□ -1.24
NUP53	YMR153W	URA4	P20051	364 aa		7.33	□□□□□ -1.24
NUP53	YMR153W	GBP2	P25555	427 aa	Known RBP RIP-Chip data	7.33	□□□□□ -1.24	not detected
NUP53	YMR153W	NIP1	P32497	812 aa	Known RBP	7.33	□□□□□ -1.24
NUP53	YMR153W	COX13	P32799	129 aa		7.33	□□□□□ -1.24
NUP53	YMR153W	RRN3	P36070	627 aa		7.33	□□□□□ -1.24
NUP53	YMR153W	CAB3	P36076	571 aa		7.33	□□□□□ -1.24
NUP53	YMR153W	VRP1	P37370	817 aa		7.33	□□□□□ -1.24
NUP53	YMR153W	YHR112C	P38716	378 aa		7.33	□□□□□ -1.24
NUP53	YMR153W	SAP1	P39955	897 aa	Known RBP	7.33	□□□□□ -1.24
NUP53	YMR153W	VRG4	P40107	337 aa		7.33	□□□□□ -1.24
NUP53	YMR153W	SEC27	P41811	889 aa	Known RBP	7.33	□□□□□ -1.24
NUP53	YMR153W	FAR3	P46671	204 aa		7.33	□□□□□ -1.24
NUP53	YMR153W	HOC1	P47124	396 aa		7.33	□□□□□ -1.24
NUP53	YMR153W	TEL2	P53038	688 aa		7.33	□□□□□ -1.24
NUP53	YMR153W	YNL058C	P53947	316 aa		7.33	□□□□□ -1.24
NUP53	YMR153W	SUR7	P54003	302 aa		7.33	□□□□□ -1.24
NUP53	YMR153W	LSM3	P57743	89 aa	Known RBP	7.33	□□□□□ -1.24
NUP53	YMR153W	STE23	Q06010	1027 aa		7.33	□□□□□ -1.24
NUP53	YMR153W	MCA1	Q08601	432 aa		7.33	□□□□□ -1.24
NUP53	YMR153W	YPL066W	Q12194	479 aa		7.33	□□□□□ -1.24
NUP53	YMR153W	AI3	P03877	415 aa		7.32	□□□□□ -1.24
NUP53	YMR153W	FUN30	P31380	1131 aa		7.32	□□□□□ -1.24

Retrieved 100 of 5,963 RNA–protein pairs in 23.3 ms