RNA–Protein interactions for RNA: YLR229C

CDC42, Transcript of Small rho-like GTPase, yeast

Gene CDC42, Length 576 nt, Biotype protein coding, Subcellular localisation Cellular bud, Endoplasmic reticulum .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CDC42	YLR229C	VPS34	P22543	875 aa		4.36	□□□□□ -1.71
CDC42	YLR229C	YCR016W	P25617	290 aa	Known RBP	4.36	□□□□□ -1.71
CDC42	YLR229C	PCL2	P25693	308 aa		4.36	□□□□□ -1.71
CDC42	YLR229C	YJU2	P28320	278 aa	Predicted RBP	4.36	□□□□□ -1.71
CDC42	YLR229C	URA10	P30402	227 aa		4.36	□□□□□ -1.71
CDC42	YLR229C	SIP2	P34164	415 aa	Known RBP	4.36	□□□□□ -1.71
CDC42	YLR229C	PEX5	P35056	612 aa		4.36	□□□□□ -1.71
CDC42	YLR229C	NTR2	P36118	322 aa	Predicted RBP	4.36	□□□□□ -1.71
CDC42	YLR229C	CTP1	P38152	299 aa		4.36	□□□□□ -1.71
CDC42	YLR229C	RFS1	P38234	210 aa	Known RBP	4.36	□□□□□ -1.71
CDC42	YLR229C	AIM3	P38266	947 aa	Known RBP	4.36	□□□□□ -1.71
CDC42	YLR229C	YBR138C	P38277	524 aa		4.36	□□□□□ -1.71
CDC42	YLR229C	OTU2	P38747	307 aa	Known RBP	4.36	□□□□□ -1.71
CDC42	YLR229C	PRM9	P39551	298 aa		4.36	□□□□□ -1.71
CDC42	YLR229C	YEN1	P40028	759 aa		4.36	□□□□□ -1.71
CDC42	YLR229C	RIC1	P40395	1056 aa		4.36	□□□□□ -1.71
CDC42	YLR229C	CDC1	P40986	491 aa		4.36	□□□□□ -1.71
CDC42	YLR229C	MSS2	P40990	351 aa		4.36	□□□□□ -1.71
CDC42	YLR229C	ERR3	P42222	437 aa		4.36	□□□□□ -1.71
CDC42	YLR229C	YJL107C	P42947	387 aa		4.36	□□□□□ -1.71
CDC42	YLR229C	MTR3	P48240	250 aa	Predicted RBP	4.36	□□□□□ -1.71
CDC42	YLR229C	TEP1	P53916	434 aa		4.36	□□□□□ -1.71
CDC42	YLR229C	KTR6	P54070	446 aa		4.36	□□□□□ -1.71
CDC42	YLR229C	SWP1	Q02795	286 aa		4.36	□□□□□ -1.71
CDC42	YLR229C	CLU1	Q03690	1277 aa	Known RBP	4.36	□□□□□ -1.71
CDC42	YLR229C	YML108W	Q03759	105 aa		4.36	□□□□□ -1.71
CDC42	YLR229C	PLP1	Q04004	230 aa		4.36	□□□□□ -1.71
CDC42	YLR229C	SEC10	Q06245	871 aa		4.36	□□□□□ -1.71
CDC42	YLR229C	GGA1	Q06336	557 aa		4.36	□□□□□ -1.71
CDC42	YLR229C	MCM21	Q06675	368 aa		4.36	□□□□□ -1.71
CDC42	YLR229C	AAD15	Q08361	143 aa		4.36	□□□□□ -1.71
CDC42	YLR229C	NRT1	Q08485	598 aa		4.36	□□□□□ -1.71
CDC42	YLR229C	SPE3	Q12074	293 aa	Known RBP	4.36	□□□□□ -1.71
CDC42	YLR229C	NBP2	Q12163	236 aa		4.36	□□□□□ -1.71
CDC42	YLR229C	HOS1	Q12214	470 aa		4.36	□□□□□ -1.71
CDC42	YLR229C	NFI1	Q12216	726 aa		4.36	□□□□□ -1.71
CDC42	YLR229C	PKH2	Q12236	1081 aa	Known RBP	4.36	□□□□□ -1.71
CDC42	YLR229C	GPR1	Q12361	961 aa		4.36	□□□□□ -1.71
CDC42	YLR229C	KCS1	Q12494	1050 aa		4.36	□□□□□ -1.71
CDC42	YLR229C	YDR524C-B	Q3E6R4	66 aa		4.36	□□□□□ -1.71
CDC42	YLR229C	RIF1	P29539	1916 aa		4.35	□□□□□ -1.71
CDC42	YLR229C	GID7	P25569	745 aa		4.35	□□□□□ -1.71
CDC42	YLR229C	CSM1	P25651	190 aa		4.35	□□□□□ -1.71
CDC42	YLR229C	PMI40	P29952	429 aa	Known RBP	4.35	□□□□□ -1.71
CDC42	YLR229C	VMA6	P32366	345 aa	Known RBP	4.35	□□□□□ -1.71
CDC42	YLR229C	RIM1	P32445	135 aa	Known RBP	4.35	□□□□□ -1.71
CDC42	YLR229C	PRP19	P32523	503 aa	Known RBP	4.35	□□□□□ -1.71
CDC42	YLR229C	ATO2	P32907	282 aa		4.35	□□□□□ -1.71
CDC42	YLR229C	UIP5	P36137	443 aa		4.35	□□□□□ -1.71
CDC42	YLR229C	MRPL7	P36519	292 aa		4.35	□□□□□ -1.71
CDC42	YLR229C	FSH1	P38777	243 aa	Known RBP	4.35	□□□□□ -1.71
CDC42	YLR229C	PPE1	P38796	400 aa		4.35	□□□□□ -1.71
CDC42	YLR229C	YAT2	P40017	923 aa		4.35	□□□□□ -1.71
CDC42	YLR229C	THO1	P40040	218 aa	Known RBP	4.35	□□□□□ -1.71
CDC42	YLR229C	PEP8	P40335	379 aa		4.35	□□□□□ -1.71
CDC42	YLR229C	SDP1	P40479	209 aa		4.35	□□□□□ -1.71
CDC42	YLR229C	MAF1	P41910	395 aa		4.35	□□□□□ -1.71
CDC42	YLR229C	GUF1	P46943	645 aa		4.35	□□□□□ -1.71
CDC42	YLR229C	SSY5	P47002	699 aa		4.35	□□□□□ -1.71
CDC42	YLR229C	YJL132W	P47014	750 aa		4.35	□□□□□ -1.71
CDC42	YLR229C	IMD4	P50094	524 aa	Known RBP	4.35	□□□□□ -1.71
CDC42	YLR229C	VPS62	P53285	467 aa		4.35	□□□□□ -1.71
CDC42	YLR229C	CUS2	P53830	285 aa	Predicted RBP	4.35	□□□□□ -1.71
CDC42	YLR229C	SLU7	Q02775	382 aa	Known RBP	4.35	□□□□□ -1.71
CDC42	YLR229C	MMT1	Q03218	510 aa		4.35	□□□□□ -1.71
CDC42	YLR229C	YMR160W	Q03823	816 aa		4.35	□□□□□ -1.71
CDC42	YLR229C	ERB1	Q04660	807 aa	Known RBP	4.35	□□□□□ -1.71
CDC42	YLR229C	AIM32	Q04689	311 aa		4.35	□□□□□ -1.71
CDC42	YLR229C	HRD3	Q05787	833 aa		4.35	□□□□□ -1.71
CDC42	YLR229C	NSL1	Q12143	216 aa		4.35	□□□□□ -1.71
CDC42	YLR229C	ATG34	Q12292	412 aa		4.35	□□□□□ -1.71
CDC42	YLR229C	DBP10	Q12389	995 aa	Known RBP	4.35	□□□□□ -1.71
CDC42	YLR229C	ARP7	Q12406	477 aa		4.35	□□□□□ -1.71
CDC42	YLR229C	NPC2	Q12408	173 aa		4.35	□□□□□ -1.71
CDC42	YLR229C	HSH49	Q99181	213 aa	Predicted RBP	4.35	□□□□□ -1.71
CDC42	YLR229C	YLR358C	O13565	187 aa		4.34	□□□□□ -1.71
CDC42	YLR229C	ATP2	P00830	511 aa	Known RBP	4.34	□□□□□ -1.71
CDC42	YLR229C	CBP2	P03874	630 aa	Predicted RBP	4.34	□□□□□ -1.71
CDC42	YLR229C	MSS18	P08593	268 aa		4.34	□□□□□ -1.71
CDC42	YLR229C	TUB1	P09733	447 aa	Known RBP	4.34	□□□□□ -1.71
CDC42	YLR229C	MET16	P18408	261 aa	Predicted RBP	4.34	□□□□□ -1.71
CDC42	YLR229C	KGD2	P19262	463 aa	Predicted RBP	4.34	□□□□□ -1.71
CDC42	YLR229C	UBA1	P22515	1024 aa	Known RBP	4.34	□□□□□ -1.71
CDC42	YLR229C	CAD1	P24813	409 aa	Known RBP	4.34	□□□□□ -1.71
CDC42	YLR229C	ERG6	P25087	383 aa	Known RBP	4.34	□□□□□ -1.71
CDC42	YLR229C	ADY2	P25613	283 aa		4.34	□□□□□ -1.71
CDC42	YLR229C	YIH1	P25637	258 aa		4.34	□□□□□ -1.71
CDC42	YLR229C	POT1	P27796	417 aa	Known RBP RIP-Chip data	4.34	□□□□□ -1.71	not detected
CDC42	YLR229C	HEM12	P32347	362 aa	Predicted RBP	4.34	□□□□□ -1.71
CDC42	YLR229C	PHA2	P32452	334 aa		4.34	□□□□□ -1.71
CDC42	YLR229C	PAH1	P32567	862 aa		4.34	□□□□□ -1.71
CDC42	YLR229C	RPC34	P32910	317 aa		4.34	□□□□□ -1.71
CDC42	YLR229C	TOD6	P34219	525 aa		4.34	□□□□□ -1.71
CDC42	YLR229C	RIM2	P38127	377 aa		4.34	□□□□□ -1.71
CDC42	YLR229C	SLX1	P38324	304 aa		4.34	□□□□□ -1.71
CDC42	YLR229C	RIM4	P38741	713 aa		4.34	□□□□□ -1.71
CDC42	YLR229C	SSZ1	P38788	538 aa	Known RBP	4.34	□□□□□ -1.71
CDC42	YLR229C	PEX18	P38855	283 aa		4.34	□□□□□ -1.71
CDC42	YLR229C	CTF8	P38877	133 aa		4.34	□□□□□ -1.71
CDC42	YLR229C	YHR202W	P38887	602 aa		4.34	□□□□□ -1.71

Retrieved 100 of 5,963 RNA–protein pairs in 18.9 ms