RNA–Protein interactions for RNA: ENST00000409783.6

PTCD3-203, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 5

Gene PTCD3, Length 587 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-203ENST00000409783 CAPN15O75808 1086 aa25.89■■□□□ 1.74
PTCD3-203ENST00000409783 SNAI1O95863 264 aaPredicted RBP25.89■■□□□ 1.74
PTCD3-203ENST00000409783 GJB1P08034 283 aa25.89■■□□□ 1.74
PTCD3-203ENST00000409783 AK2P54819 239 aa25.89■■□□□ 1.74
PTCD3-203ENST00000409783 NTRK3Q16288 839 aa25.89■■□□□ 1.74
PTCD3-203ENST00000409783 TMEM106CQ9BVX2 250 aa25.89■■□□□ 1.74
PTCD3-203ENST00000409783 SYNGAP1Q96PV0 1343 aa25.88■■□□□ 1.73
PTCD3-203ENST00000409783 TRAF1Q13077 416 aa25.88■■□□□ 1.73
PTCD3-203ENST00000409783 PRAMEF19Q5SWL8 479 aa25.88■■□□□ 1.73
PTCD3-203ENST00000409783 LRRC37A2A6NM11 1700 aa25.88■■□□□ 1.73
PTCD3-203ENST00000409783 FRMPD3Q5JV73 1810 aa25.87■■□□□ 1.73
PTCD3-203ENST00000409783 CCDC196A0A1B0GTZ2 297 aa25.87■■□□□ 1.73
PTCD3-203ENST00000409783 CALML3P27482 149 aa25.87■■□□□ 1.73
PTCD3-203ENST00000409783 NEK4P51957 841 aa25.87■■□□□ 1.73
PTCD3-203ENST00000409783 IFFO2Q5TF58 517 aa25.87■■□□□ 1.73
PTCD3-203ENST00000409783 MCF2L2Q86YR7 1114 aa25.87■■□□□ 1.73
PTCD3-203ENST00000409783 SYTL5Q8TDW5 730 aaPredicted RBP25.87■■□□□ 1.73
PTCD3-203ENST00000409783 BACH2Q9BYV9 841 aa25.87■■□□□ 1.73
PTCD3-203ENST00000409783 NCOA5Q9HCD5 579 aaKnown RBP25.87■■□□□ 1.73
PTCD3-203ENST00000409783 COL20A1Q9P218 1284 aa25.87■■□□□ 1.73
PTCD3-203ENST00000409783 SEC63Q9UGP8 760 aaKnown RBP25.87■■□□□ 1.73
PTCD3-203ENST00000409783 TPCN1Q9ULQ1 816 aa25.87■■□□□ 1.73
PTCD3-203ENST00000409783 HSD17B4P51659 736 aa25.86■■□□□ 1.73
PTCD3-203ENST00000409783 CCT2P78371 535 aaKnown RBP25.86■■□□□ 1.73
PTCD3-203ENST00000409783 ARMCX2Q7L311 632 aa25.86■■□□□ 1.73
PTCD3-203ENST00000409783 MORC4Q8TE76 937 aa25.86■■□□□ 1.73
PTCD3-203ENST00000409783 SHISA4Q96DD7 197 aa25.86■■□□□ 1.73
PTCD3-203ENST00000409783 NRBP1Q9UHY1 535 aa25.86■■□□□ 1.73
PTCD3-203ENST00000409783 DDX49Q9Y6V7 483 aaKnown RBP25.86■■□□□ 1.73
PTCD3-203ENST00000409783 V9GY48 417 aaPredicted RBP25.86■■□□□ 1.73
PTCD3-203ENST00000409783 ZNF865P0CJ78 1059 aaPredicted RBP25.85■■□□□ 1.73
PTCD3-203ENST00000409783 GJA8P48165 433 aa25.85■■□□□ 1.73
PTCD3-203ENST00000409783 U2AF1L4Q8WU68 220 aaKnown RBP25.85■■□□□ 1.73
PTCD3-203ENST00000409783 DEFB118Q96PH6 123 aa25.85■■□□□ 1.73
PTCD3-203ENST00000409783 KATNBL1Q9H079 304 aa25.85■■□□□ 1.73
PTCD3-203ENST00000409783 CRISPLD2Q9H0B8 497 aa25.85■■□□□ 1.73
PTCD3-203ENST00000409783 CDKN2AIPQ9NXV6 580 aaPredicted RBP25.85■■□□□ 1.73
PTCD3-203ENST00000409783 SGPL1O95470 568 aa25.84■■□□□ 1.73
PTCD3-203ENST00000409783 EN2P19622 333 aaPredicted RBP25.84■■□□□ 1.73
PTCD3-203ENST00000409783 ALDH5A1P51649 535 aaPredicted RBP25.84■■□□□ 1.73
PTCD3-203ENST00000409783 LHX8Q68G74 356 aa25.84■■□□□ 1.73
PTCD3-203ENST00000409783 SAMD3Q8N6K7 520 aa25.84■■□□□ 1.73
PTCD3-203ENST00000409783 LOC102724159A0A0B4J2E5 919 aa25.83■■□□□ 1.73
PTCD3-203ENST00000409783 ASB14A6NK59 587 aa25.83■■□□□ 1.73
PTCD3-203ENST00000409783 CFBP00751 764 aa25.83■■□□□ 1.73
PTCD3-203ENST00000409783 IFNAR1P17181 557 aa25.83■■□□□ 1.73
PTCD3-203ENST00000409783 PWP2Q15269 919 aaKnown RBP25.83■■□□□ 1.73
PTCD3-203ENST00000409783 ANKRD1Q15327 319 aa25.83■■□□□ 1.73
PTCD3-203ENST00000409783 WWC2Q6AWC2 1192 aa25.83■■□□□ 1.73
PTCD3-203ENST00000409783 DNERQ8NFT8 737 aa25.83■■□□□ 1.73
PTCD3-203ENST00000409783 TAAR1Q96RJ0 339 aa25.83■■□□□ 1.73
PTCD3-203ENST00000409783 MAP3K20Q9NYL2 800 aaKnown RBP25.83■■□□□ 1.73
PTCD3-203ENST00000409783 ADD3Q9UEY8 706 aaKnown RBP25.83■■□□□ 1.73
PTCD3-203ENST00000409783 PRPF3O43395 683 aaKnown RBP25.82■■□□□ 1.72
PTCD3-203ENST00000409783 EDNRBP24530 442 aa25.82■■□□□ 1.72
PTCD3-203ENST00000409783 STK3Q13188 491 aa25.82■■□□□ 1.72
PTCD3-203ENST00000409783 TYW1BQ6NUM6 668 aa25.82■■□□□ 1.72
PTCD3-203ENST00000409783 GPKOWQ92917 476 aaPredicted RBP eCLIP25.82■■□□□ 1.724e-6■■□□□ 12.5
PTCD3-203ENST00000409783 TBC1D32Q96NH3 1257 aa25.82■■□□□ 1.72
PTCD3-203ENST00000409783 SEPT4O43236 478 aa25.81■■□□□ 1.72
PTCD3-203ENST00000409783 PFKFB2O60825 505 aa25.81■■□□□ 1.72
PTCD3-203ENST00000409783 HOXA13P31271 388 aaPredicted RBP25.81■■□□□ 1.72
PTCD3-203ENST00000409783 RGS19P49795 217 aa25.81■■□□□ 1.72
PTCD3-203ENST00000409783 SCRN1Q12765 414 aa25.81■■□□□ 1.72
PTCD3-203ENST00000409783 PKN1Q16512 942 aa25.81■■□□□ 1.72
PTCD3-203ENST00000409783 PHKBQ93100 1093 aa25.81■■□□□ 1.72
PTCD3-203ENST00000409783 ABHD16BQ9H3Z7 469 aa25.81■■□□□ 1.72
PTCD3-203ENST00000409783 UPF2Q9HAU5 1272 aaKnown RBP25.81■■□□□ 1.72
PTCD3-203ENST00000409783 DDX20Q9UHI6 824 aaKnown RBP25.81■■□□□ 1.72
PTCD3-203ENST00000409783 CNPY2Q9Y2B0 182 aa25.81■■□□□ 1.72
PTCD3-203ENST00000409783 LARGE1O95461 756 aa25.8■■□□□ 1.72
PTCD3-203ENST00000409783 CNGA1P29973 690 aa25.8■■□□□ 1.72
PTCD3-203ENST00000409783 ACVR2BQ13705 512 aa25.8■■□□□ 1.72
PTCD3-203ENST00000409783 PFKFB3Q16875 520 aaPredicted RBP25.8■■□□□ 1.72
PTCD3-203ENST00000409783 HEATR3Q7Z4Q2 680 aa25.8■■□□□ 1.72
PTCD3-203ENST00000409783 OGDHLQ9ULD0 1010 aa25.8■■□□□ 1.72
PTCD3-203ENST00000409783 GCOM1H8Y6P7 765 aaPredicted RBP25.79■■□□□ 1.72
PTCD3-203ENST00000409783 MEIS2O14770 477 aa25.79■■□□□ 1.72
PTCD3-203ENST00000409783 PPFIA3O75145 1194 aa25.79■■□□□ 1.72
PTCD3-203ENST00000409783 POLR2MP0CAP2 368 aa25.79■■□□□ 1.72
PTCD3-203ENST00000409783 ME3Q16798 604 aa25.79■■□□□ 1.72
PTCD3-203ENST00000409783 RNF26Q9BY78 433 aaPredicted RBP25.79■■□□□ 1.72
PTCD3-203ENST00000409783 SLKQ9H2G2 1235 aaPredicted RBP25.79■■□□□ 1.72
PTCD3-203ENST00000409783 hCG_1984214I3L0E3 225 aa25.78■■□□□ 1.72
PTCD3-203ENST00000409783 STXBP3O00186 592 aa25.78■■□□□ 1.72
PTCD3-203ENST00000409783 PIK3CDO00329 1044 aa25.78■■□□□ 1.72
PTCD3-203ENST00000409783 NOL8Q76FK4 1167 aaKnown RBP25.78■■□□□ 1.72
PTCD3-203ENST00000409783 ZNF713Q8N859 430 aaPredicted RBP25.78■■□□□ 1.72
PTCD3-203ENST00000409783 RMDN3Q96TC7 470 aa25.78■■□□□ 1.72
PTCD3-203ENST00000409783 BARHL2Q9NY43 387 aa25.78■■□□□ 1.72
PTCD3-203ENST00000409783 ZHX1Q9UKY1 873 aaPredicted RBP25.78■■□□□ 1.72
PTCD3-203ENST00000409783 MSCO60682 206 aa25.77■■□□□ 1.72
PTCD3-203ENST00000409783 SCG2P13521 617 aa25.77■■□□□ 1.72
PTCD3-203ENST00000409783 CAPN2P17655 700 aa25.77■■□□□ 1.72
PTCD3-203ENST00000409783 MNX1P50219 401 aaPredicted RBP25.77■■□□□ 1.72
PTCD3-203ENST00000409783 TAPT1Q6NXT6 567 aa25.77■■□□□ 1.72
PTCD3-203ENST00000409783 USP17L6PQ6QN14 398 aa25.77■■□□□ 1.72
PTCD3-203ENST00000409783 NSUN6Q8TEA1 469 aaKnown RBP25.77■■□□□ 1.72
PTCD3-203ENST00000409783 SLC26A6Q9BXS9 759 aa25.77■■□□□ 1.72
PTCD3-203ENST00000409783 PXMP2Q9NR77 195 aa25.77■■□□□ 1.72
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms