RNA–Protein interactions for RNA: ENST00000494123.5

BRCA1-223, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 1,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-223ENST00000494123 HSPA8P11142 646 aaKnown RBP16.81■□□□□ 0.28
BRCA1-223ENST00000494123 TAL1P17542 331 aaPredicted RBP16.81■□□□□ 0.28
BRCA1-223ENST00000494123 PSMC4P43686 418 aa16.81■□□□□ 0.28
BRCA1-223ENST00000494123 ST3GAL1Q11201 340 aa16.81■□□□□ 0.28
BRCA1-223ENST00000494123 ARHGEF6Q15052 776 aa16.81■□□□□ 0.28
BRCA1-223ENST00000494123 CD99L2Q8TCZ2 262 aa16.81■□□□□ 0.28
BRCA1-223ENST00000494123 ACAD9Q9H845 621 aa16.81■□□□□ 0.28
BRCA1-223ENST00000494123 MRPL11Q9Y3B7 192 aaKnown RBP16.81■□□□□ 0.28
BRCA1-223ENST00000494123 PTPDC1A2A3K4 754 aa16.81■□□□□ 0.28
BRCA1-223ENST00000494123 hCG_1984214I3L0E3 225 aa16.81■□□□□ 0.28
BRCA1-223ENST00000494123 CTDNEP1O95476 244 aa16.81■□□□□ 0.28
BRCA1-223ENST00000494123 SCG2P13521 617 aa16.81■□□□□ 0.28
BRCA1-223ENST00000494123 PFKFB3Q16875 520 aaPredicted RBP16.81■□□□□ 0.28
BRCA1-223ENST00000494123 GPR142Q7Z601 462 aa16.81■□□□□ 0.28
BRCA1-223ENST00000494123 PLEKHH3Q7Z736 793 aa16.81■□□□□ 0.28
BRCA1-223ENST00000494123 ZNF713Q8N859 430 aaPredicted RBP16.81■□□□□ 0.28
BRCA1-223ENST00000494123 NSUN7Q8NE18 718 aaKnown RBP16.81■□□□□ 0.28
BRCA1-223ENST00000494123 GPKOWQ92917 476 aaPredicted RBP eCLIP16.81■□□□□ 0.28
BRCA1-223ENST00000494123 COA7Q96BR5 231 aa16.81■□□□□ 0.28
BRCA1-223ENST00000494123 LLPHQ9BRT6 129 aaKnown RBP16.81■□□□□ 0.28
BRCA1-223ENST00000494123 PLXNB2O15031 1838 aa16.8■□□□□ 0.28
BRCA1-223ENST00000494123 STK36Q9NRP7 1315 aa16.8■□□□□ 0.28
BRCA1-223ENST00000494123 KCTD2Q14681 263 aa16.8■□□□□ 0.28
BRCA1-223ENST00000494123 WASF1Q92558 559 aa16.8■□□□□ 0.28
BRCA1-223ENST00000494123 DDX11Q96FC9 970 aa16.8■□□□□ 0.28
BRCA1-223ENST00000494123 ARHGAP39Q9C0H5 1083 aa16.8■□□□□ 0.28
BRCA1-223ENST00000494123 ORC3Q9UBD5 711 aaPredicted RBP16.8■□□□□ 0.28
BRCA1-223ENST00000494123 SMCHD1A6NHR9 2005 aa16.8■□□□□ 0.28
BRCA1-223ENST00000494123 ZSWIM8A7E2V4 1837 aa16.8■□□□□ 0.28
BRCA1-223ENST00000494123 DTNBO60941 627 aa16.79■□□□□ 0.28
BRCA1-223ENST00000494123 FCER1AP12319 257 aa16.79■□□□□ 0.28
BRCA1-223ENST00000494123 LBX1P52954 281 aa16.79■□□□□ 0.28
BRCA1-223ENST00000494123 MUM1L1Q5H9M0 696 aa16.79■□□□□ 0.28
BRCA1-223ENST00000494123 WWC2Q6AWC2 1192 aa16.79■□□□□ 0.28
BRCA1-223ENST00000494123 ANKRD35Q8N283 1001 aa16.79■□□□□ 0.28
BRCA1-223ENST00000494123 TRIM47Q96LD4 638 aa16.79■□□□□ 0.28
BRCA1-223ENST00000494123 MMP19Q99542 508 aa16.79■□□□□ 0.28
BRCA1-223ENST00000494123 RBBP6Q7Z6E9 1792 aaKnown RBP16.79■□□□□ 0.28
BRCA1-223ENST00000494123 STRNO43815 780 aa16.78■□□□□ 0.28
BRCA1-223ENST00000494123 JAK2O60674 1132 aa16.78■□□□□ 0.28
BRCA1-223ENST00000494123 CTGFP29279 349 aa16.78■□□□□ 0.28
BRCA1-223ENST00000494123 NAPAP54920 295 aa16.78■□□□□ 0.28
BRCA1-223ENST00000494123 HMGN5P82970 282 aaKnown RBP16.78■□□□□ 0.28
BRCA1-223ENST00000494123 PKN1Q16512 942 aa16.78■□□□□ 0.28
BRCA1-223ENST00000494123 NSMFQ6X4W1 530 aa16.78■□□□□ 0.28
BRCA1-223ENST00000494123 CCDC12Q8WUD4 166 aaPredicted RBP16.78■□□□□ 0.28
BRCA1-223ENST00000494123 BARHL2Q9NY43 387 aa16.78■□□□□ 0.28
BRCA1-223ENST00000494123 ZSCAN21Q9Y5A6 473 aaPredicted RBP16.78■□□□□ 0.28
BRCA1-223ENST00000494123 NFIBO00712 420 aa16.78■□□□□ 0.28
BRCA1-223ENST00000494123 PTPREP23469 700 aa16.78■□□□□ 0.28
BRCA1-223ENST00000494123 HOXD10P28358 340 aa16.78■□□□□ 0.28
BRCA1-223ENST00000494123 PPP1R18Q6NYC8 613 aa16.78■□□□□ 0.28
BRCA1-223ENST00000494123 MCF2L2Q86YR7 1114 aa16.78■□□□□ 0.28
BRCA1-223ENST00000494123 FAM184AQ8NB25 1140 aa16.78■□□□□ 0.28
BRCA1-223ENST00000494123 CASP8AP2Q9UKL3 1982 aa16.77■□□□□ 0.28
BRCA1-223ENST00000494123 PFASO15067 1338 aa16.77■□□□□ 0.27
BRCA1-223ENST00000494123 SLC15A5A6NIM6 579 aa16.77■□□□□ 0.27
BRCA1-223ENST00000494123 GNRH1P01148 92 aa16.77■□□□□ 0.27
BRCA1-223ENST00000494123 HSP90AA1P07900 732 aaKnown RBP16.77■□□□□ 0.27
BRCA1-223ENST00000494123 XBP1P17861 261 aa16.77■□□□□ 0.27
BRCA1-223ENST00000494123 BECN1Q14457 450 aa16.77■□□□□ 0.27
BRCA1-223ENST00000494123 RNF207Q6ZRF8 634 aa16.77■□□□□ 0.27
BRCA1-223ENST00000494123 CCDC148Q8NFR7 591 aa16.77■□□□□ 0.27
BRCA1-223ENST00000494123 SMARCC2Q8TAQ2 1214 aa16.77■□□□□ 0.27
BRCA1-223ENST00000494123 CLEC4DQ8WXI8 215 aa16.77■□□□□ 0.27
BRCA1-223ENST00000494123 NUDT12Q9BQG2 462 aa16.77■□□□□ 0.27
BRCA1-223ENST00000494123 STXBP3O00186 592 aa16.76■□□□□ 0.27
BRCA1-223ENST00000494123 CFBP00751 764 aa16.76■□□□□ 0.27
BRCA1-223ENST00000494123 CUL4AQ13619 759 aa16.76■□□□□ 0.27
BRCA1-223ENST00000494123 ABRAQ8N0Z2 381 aa16.76■□□□□ 0.27
BRCA1-223ENST00000494123 SOCS4Q8WXH5 440 aa16.76■□□□□ 0.27
BRCA1-223ENST00000494123 ALG1Q9BT22 464 aa16.76■□□□□ 0.27
BRCA1-223ENST00000494123 A1CFQ9NQ94 594 aaKnown RBP16.76■□□□□ 0.27
BRCA1-223ENST00000494123 VPS54Q9P1Q0 977 aa16.76■□□□□ 0.27
BRCA1-223ENST00000494123 SMC3Q9UQE7 1217 aa16.76■□□□□ 0.27
BRCA1-223ENST00000494123 KIF3AQ9Y496 699 aa16.76■□□□□ 0.27
BRCA1-223ENST00000494123 ZNF236Q9UL36 1845 aa16.75■□□□□ 0.27
BRCA1-223ENST00000494123 FDPSP14324 419 aaKnown RBP16.75■□□□□ 0.27
BRCA1-223ENST00000494123 ADORA2AP29274 412 aa16.75■□□□□ 0.27
BRCA1-223ENST00000494123 GRB14Q14449 540 aa16.75■□□□□ 0.27
BRCA1-223ENST00000494123 DHX30Q7L2E3 1194 aaKnown RBP eCLIP16.75■□□□□ 0.27
BRCA1-223ENST00000494123 DPP9Q86TI2 863 aa16.75■□□□□ 0.27
BRCA1-223ENST00000494123 RGS22Q8NE09 1264 aa16.75■□□□□ 0.27
BRCA1-223ENST00000494123 CUL5Q93034 780 aa16.75■□□□□ 0.27
BRCA1-223ENST00000494123 AIFM3Q96NN9 605 aa16.75■□□□□ 0.27
BRCA1-223ENST00000494123 PSTPIP2Q9H939 334 aa16.75■□□□□ 0.27
BRCA1-223ENST00000494123 SH3GLB2Q9NR46 395 aa16.75■□□□□ 0.27
BRCA1-223ENST00000494123 SLC5A4Q9NY91 659 aa16.75■□□□□ 0.27
BRCA1-223ENST00000494123 TRIM17Q9Y577 477 aa16.75■□□□□ 0.27
BRCA1-223ENST00000494123 ZNFX1Q9P2E3 1918 aaKnown RBP16.75■□□□□ 0.27
BRCA1-223ENST00000494123 SMCO2A6NFE2 343 aa16.74■□□□□ 0.27
BRCA1-223ENST00000494123 GCOM1H8Y6P7 765 aaPredicted RBP16.74■□□□□ 0.27
BRCA1-223ENST00000494123 POLR2MP0CAP2 368 aa16.74■□□□□ 0.27
BRCA1-223ENST00000494123 CALML3P27482 149 aa16.74■□□□□ 0.27
BRCA1-223ENST00000494123 ADCY7P51828 1080 aa16.74■□□□□ 0.27
BRCA1-223ENST00000494123 CAP1Q01518 475 aa16.74■□□□□ 0.27
BRCA1-223ENST00000494123 BAATQ14032 418 aaPredicted RBP16.74■□□□□ 0.27
BRCA1-223ENST00000494123 TRIM29Q14134 588 aa16.74■□□□□ 0.27
BRCA1-223ENST00000494123 C6orf50Q9HD87 102 aa16.74■□□□□ 0.27
BRCA1-223ENST00000494123 CYP39A1Q9NYL5 469 aa16.74■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 54.7 ms