RNA–Protein interactions for RNA: YKR098C

UBP11, Transcript of Ubiquitin-specific protease, yeastyeast

Gene UBP11, Length 2,154 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
UBP11YKR098C APL4Q12028 832 aa2.34□□□□□ -2.04
UBP11YKR098C SEC39Q12745 709 aa2.34□□□□□ -2.04
UBP11YKR098C OPI1P21957 404 aa2.33□□□□□ -2.04
UBP11YKR098C CLB2P24869 491 aa2.33□□□□□ -2.04
UBP11YKR098C BOS1P25385 244 aa2.33□□□□□ -2.04
UBP11YKR098C CDC60P26637 1090 aaKnown RBP2.33□□□□□ -2.04
UBP11YKR098C BUD14P27637 709 aa2.33□□□□□ -2.04
UBP11YKR098C ARP1P38696 384 aa2.33□□□□□ -2.04
UBP11YKR098C ANS1P38832 159 aa2.33□□□□□ -2.04
UBP11YKR098C STB2P46679 850 aa2.33□□□□□ -2.04
UBP11YKR098C TAX4P47030 604 aa2.33□□□□□ -2.04
UBP11YKR098C ORC5P50874 479 aa2.33□□□□□ -2.04
UBP11YKR098C ERG26P53199 349 aaKnown RBP2.33□□□□□ -2.04
UBP11YKR098C EAF7P53911 425 aaKnown RBP2.33□□□□□ -2.04
UBP11YKR098C ERO1Q03103 563 aa2.33□□□□□ -2.04
UBP11YKR098C RBS1Q05672 457 aaKnown RBP2.33□□□□□ -2.04
UBP11YKR098C BSP1Q06604 576 aa2.33□□□□□ -2.04
UBP11YKR098C APN1P22936 367 aa2.33□□□□□ -2.04
UBP11YKR098C CLB1P24868 471 aa2.33□□□□□ -2.04
UBP11YKR098C ELO2P25358 347 aa2.33□□□□□ -2.04
UBP11YKR098C YCR051WP25631 222 aa2.33□□□□□ -2.04
UBP11YKR098C URA7P28274 579 aaKnown RBP2.33□□□□□ -2.04
UBP11YKR098C YME1P32795 747 aa2.33□□□□□ -2.04
UBP11YKR098C YKL100CP34248 587 aa2.33□□□□□ -2.04
UBP11YKR098C MIA40P36046 403 aa2.33□□□□□ -2.04
UBP11YKR098C ICS2P38284 255 aa2.33□□□□□ -2.04
UBP11YKR098C MSR1P38714 643 aa2.33□□□□□ -2.04
UBP11YKR098C ARN1P38731 627 aa2.33□□□□□ -2.04
UBP11YKR098C APE4P38821 490 aa2.33□□□□□ -2.04
UBP11YKR098C VMA13P41807 478 aaKnown RBP2.33□□□□□ -2.04
UBP11YKR098C YJL107CP42947 387 aa2.33□□□□□ -2.04
UBP11YKR098C LYS20P48570 428 aaKnown RBP2.33□□□□□ -2.04
UBP11YKR098C ASI1P54074 624 aa2.33□□□□□ -2.04
UBP11YKR098C TAP42Q04372 366 aa2.33□□□□□ -2.04
UBP11YKR098C EMI2Q04409 500 aaKnown RBP2.33□□□□□ -2.04
UBP11YKR098C ROY1Q04847 553 aa2.33□□□□□ -2.04
UBP11YKR098C COQ9Q05779 260 aa2.33□□□□□ -2.04
UBP11YKR098C ADE13Q05911 482 aaKnown RBP2.33□□□□□ -2.04
UBP11YKR098C PDR8Q06149 701 aa2.33□□□□□ -2.04
UBP11YKR098C TPO3Q06451 622 aa2.33□□□□□ -2.04
UBP11YKR098C MCH4Q08268 501 aa2.33□□□□□ -2.04
UBP11YKR098C SLK19Q08581 821 aaKnown RBP2.33□□□□□ -2.04
UBP11YKR098C YDL007C-AQ2V2Q0 85 aa2.33□□□□□ -2.04
UBP11YKR098C NUP1P20676 1076 aa2.32□□□□□ -2.04
UBP11YKR098C BUD5P25300 642 aaPredicted RBP2.32□□□□□ -2.04
UBP11YKR098C SNT1P25357 1226 aa2.32□□□□□ -2.04
UBP11YKR098C HOT13P36078 116 aa2.32□□□□□ -2.04
UBP11YKR098C DBP8P38719 431 aa2.32□□□□□ -2.04
UBP11YKR098C STU2P46675 888 aa2.32□□□□□ -2.04
UBP11YKR098C DLD2P46681 530 aaKnown RBP2.32□□□□□ -2.04
UBP11YKR098C BPL1P48445 690 aaPredicted RBP2.32□□□□□ -2.04
UBP11YKR098C VPS9P54787 451 aa2.32□□□□□ -2.04
UBP11YKR098C RSM23Q01163 450 aa2.32□□□□□ -2.04
UBP11YKR098C PDS5Q04264 1277 aa2.32□□□□□ -2.04
UBP11YKR098C AIM32Q04689 311 aa2.32□□□□□ -2.04
UBP11YKR098C VTA1Q06263 330 aa2.32□□□□□ -2.04
UBP11YKR098C ATG26Q06321 1198 aa2.32□□□□□ -2.04
UBP11YKR098C FRE3Q08905 711 aa2.32□□□□□ -2.04
UBP11YKR098C ARG81P05085 880 aa2.32□□□□□ -2.04
UBP11YKR098C PUT2P07275 575 aa2.32□□□□□ -2.04
UBP11YKR098C PAP1P29468 568 aaKnown RBP2.32□□□□□ -2.04
UBP11YKR098C HXT3P32466 567 aaKnown RBP2.32□□□□□ -2.04
UBP11YKR098C FLO10P36170 1169 aa2.32□□□□□ -2.04
UBP11YKR098C RPL32P38061 130 aaKnown RBP2.32□□□□□ -2.04
UBP11YKR098C VPS41P38959 992 aa2.32□□□□□ -2.04
UBP11YKR098C CIN4P39110 191 aa2.32□□□□□ -2.04
UBP11YKR098C JEM1P40358 645 aa2.32□□□□□ -2.04
UBP11YKR098C PYK2P52489 506 aaKnown RBP2.32□□□□□ -2.04
UBP11YKR098C YNL144CP53907 740 aa2.32□□□□□ -2.04
UBP11YKR098C CIK1Q01649 594 aa2.32□□□□□ -2.04
UBP11YKR098C SOV1Q04748 898 aa2.32□□□□□ -2.04
UBP11YKR098C ECM30Q06673 1274 aa2.32□□□□□ -2.04
UBP11YKR098C NCE102Q12207 173 aaRIP-Chip data2.32□□□□□ -2.04not detected
UBP11YKR098C AFI1Q99222 893 aa2.32□□□□□ -2.04
UBP11YKR098C YML133CQ03099 1374 aa2.31□□□□□ -2.04
UBP11YKR098C YLL067CQ07888 1374 aa2.31□□□□□ -2.04
UBP11YKR098C YLL066CQ99208 1374 aa2.31□□□□□ -2.04
UBP11YKR098C RPL3P14126 387 aaKnown RBP2.31□□□□□ -2.04
UBP11YKR098C CLC1P17891 233 aa2.31□□□□□ -2.04
UBP11YKR098C REC107P21651 314 aa2.31□□□□□ -2.04
UBP11YKR098C MTR2P34232 184 aaKnown RBP2.31□□□□□ -2.04
UBP11YKR098C APE3P37302 537 aaKnown RBP2.31□□□□□ -2.04
UBP11YKR098C RFC1P38630 861 aaKnown RBP2.31□□□□□ -2.04
UBP11YKR098C ZIM17P42844 174 aa2.31□□□□□ -2.04
UBP11YKR098C IRC7P43623 340 aa2.31□□□□□ -2.04
UBP11YKR098C TCB2P48231 1178 aa2.31□□□□□ -2.04
UBP11YKR098C ART5P53244 586 aaKnown RBP2.31□□□□□ -2.04
UBP11YKR098C CAF130P53280 1122 aaPredicted RBP2.31□□□□□ -2.04
UBP11YKR098C OGG1P53397 376 aaPredicted RBP2.31□□□□□ -2.04
UBP11YKR098C ATP23P53722 227 aa2.31□□□□□ -2.04
UBP11YKR098C OSW1Q08692 278 aa2.31□□□□□ -2.04
UBP11YKR098C PFA4Q12006 378 aa2.31□□□□□ -2.04
UBP11YKR098C RPL31BP0C2H9 113 aaKnown RBP2.3□□□□□ -2.04
UBP11YKR098C NAT1P12945 854 aaKnown RBP2.3□□□□□ -2.04
UBP11YKR098C CPR2P23285 205 aa2.3□□□□□ -2.04
UBP11YKR098C MNE1P24720 663 aa2.3□□□□□ -2.04
UBP11YKR098C ERV1P27882 189 aa2.3□□□□□ -2.04
UBP11YKR098C GAC1P28006 793 aa2.3□□□□□ -2.04
UBP11YKR098C RML2P32611 393 aa2.3□□□□□ -2.04
UBP11YKR098C PPZ2P33329 710 aa2.3□□□□□ -2.04
Retrieved 100 of 5,963 RNA–protein pairs in 108.4 ms