RNA–Protein interactions for RNA: ENST00000409915.8

SF3B1-202, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2 BASIC

Gene SF3B1, Length 600 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-202ENST00000409915 ZNF277Q9NRM2 450 aaPredicted RBP5.41□□□□□ -1.54
SF3B1-202ENST00000409915 C9orf78Q9NZ63 289 aaPredicted RBP5.41□□□□□ -1.54
SF3B1-202ENST00000409915 GMPR2Q9P2T1 348 aaKnown RBP5.41□□□□□ -1.54
SF3B1-202ENST00000409915 FAM8A1Q9UBU6 413 aa5.41□□□□□ -1.54
SF3B1-202ENST00000409915 MCM8Q9UJA3 840 aa5.41□□□□□ -1.54
SF3B1-202ENST00000409915 LZTS1Q9Y250 596 aa5.41□□□□□ -1.54
SF3B1-202ENST00000409915 PLAAQ9Y263 795 aa5.41□□□□□ -1.54
SF3B1-202ENST00000409915 CHMP3Q9Y3E7 222 aa5.41□□□□□ -1.54
SF3B1-202ENST00000409915 COL4A5P29400 1685 aa5.4□□□□□ -1.54
SF3B1-202ENST00000409915 LRRC37AA6NMS7 1700 aa5.4□□□□□ -1.54
SF3B1-202ENST00000409915 TIAM2Q8IVF5 1701 aa5.4□□□□□ -1.54
SF3B1-202ENST00000409915 SPEF2Q9C093 1822 aa5.4□□□□□ -1.54
SF3B1-202ENST00000409915 A0A1W2PRU2 124 aa5.4□□□□□ -1.54
SF3B1-202ENST00000409915 TMEM229AB2RXF0 380 aa5.4□□□□□ -1.54
SF3B1-202ENST00000409915 GIPC1O14908 333 aa5.4□□□□□ -1.54
SF3B1-202ENST00000409915 PPP1R12BO60237 982 aaPredicted RBP5.4□□□□□ -1.54
SF3B1-202ENST00000409915 RASGRP1O95267 797 aa5.4□□□□□ -1.54
SF3B1-202ENST00000409915 ALDH1A1P00352 501 aa5.4□□□□□ -1.54
SF3B1-202ENST00000409915 PTMAP06454 111 aaKnown RBP5.4□□□□□ -1.54
SF3B1-202ENST00000409915 COL6A1P12109 1028 aa5.4□□□□□ -1.54
SF3B1-202ENST00000409915 RLBP1P12271 317 aa5.4□□□□□ -1.54
SF3B1-202ENST00000409915 FOXO4P98177 505 aa5.4□□□□□ -1.54
SF3B1-202ENST00000409915 RASGRF1Q13972 1273 aa5.4□□□□□ -1.54
SF3B1-202ENST00000409915 C21orf62-AS1Q17RA5 79 aa5.4□□□□□ -1.54
SF3B1-202ENST00000409915 GRAMD1BQ3KR37 738 aa5.4□□□□□ -1.54
SF3B1-202ENST00000409915 CCDC152Q4G0S7 254 aa5.4□□□□□ -1.54
SF3B1-202ENST00000409915 INO80DQ53TQ3 878 aaPredicted RBP5.4□□□□□ -1.54
SF3B1-202ENST00000409915 CT47A1Q5JQC4 288 aaPredicted RBP5.4□□□□□ -1.54
SF3B1-202ENST00000409915 LMBR1LQ6UX01 489 aa5.4□□□□□ -1.54
SF3B1-202ENST00000409915 ATF7IPQ6VMQ6 1270 aa5.4□□□□□ -1.54
SF3B1-202ENST00000409915 THNSL2Q86YJ6 484 aa5.4□□□□□ -1.54
SF3B1-202ENST00000409915 TMEM57Q8N5G2 664 aa5.4□□□□□ -1.54
SF3B1-202ENST00000409915 CEP120Q8N960 986 aa5.4□□□□□ -1.54
SF3B1-202ENST00000409915 ZNF511Q8NB15 262 aa5.4□□□□□ -1.54
SF3B1-202ENST00000409915 EHBP1Q8NDI1 1231 aa5.4□□□□□ -1.54
SF3B1-202ENST00000409915 SVIPQ8NHG7 77 aa5.4□□□□□ -1.54
SF3B1-202ENST00000409915 KAZALD1Q96I82 304 aa5.4□□□□□ -1.54
SF3B1-202ENST00000409915 EAF1Q96JC9 268 aaPredicted RBP5.4□□□□□ -1.54
SF3B1-202ENST00000409915 MEIS3Q99687 375 aa5.4□□□□□ -1.54
SF3B1-202ENST00000409915 API5Q9BZZ5 524 aaKnown RBP5.4□□□□□ -1.54
SF3B1-202ENST00000409915 USP44Q9H0E7 712 aa5.4□□□□□ -1.54
SF3B1-202ENST00000409915 BICC1Q9H694 974 aaKnown RBP5.4□□□□□ -1.54
SF3B1-202ENST00000409915 ARHGEF10LQ9HCE6 1279 aa5.4□□□□□ -1.54
SF3B1-202ENST00000409915 ST7Q9NRC1 585 aa5.4□□□□□ -1.54
SF3B1-202ENST00000409915 ATP6V0A2Q9Y487 856 aa5.4□□□□□ -1.54
SF3B1-202ENST00000409915 DUOX1Q9NRD9 1551 aa5.4□□□□□ -1.55
SF3B1-202ENST00000409915 FER1L6Q2WGJ9 1857 aa5.4□□□□□ -1.55
SF3B1-202ENST00000409915 CHD4Q14839 1912 aa5.4□□□□□ -1.55
SF3B1-202ENST00000409915 MYH3P11055 1940 aa5.39□□□□□ -1.55
SF3B1-202ENST00000409915 FSD2A1L4K1 749 aa5.39□□□□□ -1.55
SF3B1-202ENST00000409915 WTIPA6NIX2 430 aaPredicted RBP5.39□□□□□ -1.55
SF3B1-202ENST00000409915 CPNE3O75131 537 aaKnown RBP5.39□□□□□ -1.55
SF3B1-202ENST00000409915 ZSCAN20P17040 1043 aaPredicted RBP5.39□□□□□ -1.55
SF3B1-202ENST00000409915 LMNB1P20700 586 aa5.39□□□□□ -1.55
SF3B1-202ENST00000409915 ITGA6P23229 1130 aa5.39□□□□□ -1.55
SF3B1-202ENST00000409915 COPB2P35606 906 aa5.39□□□□□ -1.55
SF3B1-202ENST00000409915 STAT3P40763 770 aa5.39□□□□□ -1.55
SF3B1-202ENST00000409915 CCT4P50991 539 aaKnown RBP5.39□□□□□ -1.55
SF3B1-202ENST00000409915 RPS8P62241 208 aaKnown RBP5.39□□□□□ -1.55
SF3B1-202ENST00000409915 IRX3P78415 501 aaPredicted RBP5.39□□□□□ -1.55
SF3B1-202ENST00000409915 GPSM2P81274 684 aa5.39□□□□□ -1.55
SF3B1-202ENST00000409915 NFKB2Q00653 900 aa5.39□□□□□ -1.55
SF3B1-202ENST00000409915 POU5F1Q01860 360 aaKnown RBP5.39□□□□□ -1.55
SF3B1-202ENST00000409915 DDR2Q16832 855 aa5.39□□□□□ -1.55
SF3B1-202ENST00000409915 AOC3Q16853 763 aa5.39□□□□□ -1.55
SF3B1-202ENST00000409915 CTC1Q2NKJ3 1217 aa5.39□□□□□ -1.55
SF3B1-202ENST00000409915 TMEM95Q3KNT9 176 aa5.39□□□□□ -1.55
SF3B1-202ENST00000409915 TNNI3KQ59H18 835 aa5.39□□□□□ -1.55
SF3B1-202ENST00000409915 ZKSCAN2Q63HK3 967 aa5.39□□□□□ -1.55
SF3B1-202ENST00000409915 DPP8Q6V1X1 898 aaPredicted RBP5.39□□□□□ -1.55
SF3B1-202ENST00000409915 ANKRD18AQ8IVF6 992 aa5.39□□□□□ -1.55
SF3B1-202ENST00000409915 CHPFQ8IZ52 775 aa5.39□□□□□ -1.55
SF3B1-202ENST00000409915 IFNL3Q8IZI9 196 aa5.39□□□□□ -1.55
SF3B1-202ENST00000409915 CRIPAKQ8N1N5 446 aa5.39□□□□□ -1.55
SF3B1-202ENST00000409915 ANKRD44Q8N8A2 993 aa5.39□□□□□ -1.55
SF3B1-202ENST00000409915 ZNF784Q8NCA9 323 aaPredicted RBP5.39□□□□□ -1.55
SF3B1-202ENST00000409915 C1orf131Q8NDD1 294 aaKnown RBP5.39□□□□□ -1.55
SF3B1-202ENST00000409915 TTC8Q8TAM2 541 aa5.39□□□□□ -1.55
SF3B1-202ENST00000409915 KLHDC4Q8TBB5 520 aa5.39□□□□□ -1.55
SF3B1-202ENST00000409915 PANK1Q8TE04 598 aa5.39□□□□□ -1.55
SF3B1-202ENST00000409915 THAP3Q8WTV1 239 aaPredicted RBP5.39□□□□□ -1.55
SF3B1-202ENST00000409915 E2F7Q96AV8 911 aa5.39□□□□□ -1.55
SF3B1-202ENST00000409915 TRIM44Q96DX7 344 aaPredicted RBP5.39□□□□□ -1.55
SF3B1-202ENST00000409915 PLA2G12BQ9BX93 195 aa5.39□□□□□ -1.55
SF3B1-202ENST00000409915 ZIM2Q9NZV7 527 aa5.39□□□□□ -1.55
SF3B1-202ENST00000409915 KLF15Q9UIH9 416 aa5.39□□□□□ -1.55
SF3B1-202ENST00000409915 RCAN3Q9UKA8 241 aa5.39□□□□□ -1.55
SF3B1-202ENST00000409915 LRFN2Q9ULH4 789 aa5.39□□□□□ -1.55
SF3B1-202ENST00000409915 ISY1Q9ULR0 285 aaKnown RBP5.39□□□□□ -1.55
SF3B1-202ENST00000409915 TPX2Q9ULW0 747 aaKnown RBP5.39□□□□□ -1.55
SF3B1-202ENST00000409915 MAPK8IP1Q9UQF2 711 aa5.39□□□□□ -1.55
SF3B1-202ENST00000409915 MRPS23Q9Y3D9 190 aaKnown RBP5.39□□□□□ -1.55
SF3B1-202ENST00000409915 LRRFIP2Q9Y608 721 aaKnown RBP5.39□□□□□ -1.55
SF3B1-202ENST00000409915 PTCH2Q9Y6C5 1203 aa5.39□□□□□ -1.55
SF3B1-202ENST00000409915 UTYO14607 1347 aa5.39□□□□□ -1.55
SF3B1-202ENST00000409915 ZNF541Q9H0D2 1346 aa5.39□□□□□ -1.55
SF3B1-202ENST00000409915 LTBP1Q14766 1721 aa5.38□□□□□ -1.55
SF3B1-202ENST00000409915 MINDY4BA8MYZ0 360 aa5.38□□□□□ -1.55
SF3B1-202ENST00000409915 SNAP23O00161 211 aa5.38□□□□□ -1.55
SF3B1-202ENST00000409915 IPO8O15397 1037 aaKnown RBP5.38□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 64 ms