RNA–Protein interactions for RNA: ENSMUST00000054384.5

Trim56-201, Transcript of E3 ubiquitin-protein ligase TRIM56, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Trim56, Length 9,279 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56-201ENSMUST00000054384 Cep104Q80V31 926 aa13.01□□□□□ -0.33
Trim56-201ENSMUST00000054384 Zscan2Q07230 614 aa13.01□□□□□ -0.33
Trim56-201ENSMUST00000054384 Esco1Q69Z69 843 aa13.01□□□□□ -0.33
Trim56-201ENSMUST00000054384 Nrbp2Q91V36 499 aa13.01□□□□□ -0.33
Trim56-201ENSMUST00000054384 Zmat2Q9CPW7 199 aa13.01□□□□□ -0.33
Trim56-201ENSMUST00000054384 CpvlQ9D3S9 478 aa13.01□□□□□ -0.33
Trim56-201ENSMUST00000054384 NsfP46460 744 aa13.01□□□□□ -0.33
Trim56-201ENSMUST00000054384 XpcP51612 930 aa13.01□□□□□ -0.33
Trim56-201ENSMUST00000054384 Timm10P62073 90 aa13.01□□□□□ -0.33
Trim56-201ENSMUST00000054384 Pfdn4Q3UWL8 134 aa13.01□□□□□ -0.33
Trim56-201ENSMUST00000054384 Polr2bQ8CFI7 1174 aaKnown RBP13.01□□□□□ -0.33
Trim56-201ENSMUST00000054384 Klhl40Q9D783 621 aa13.01□□□□□ -0.33
Trim56-201ENSMUST00000054384 Akap17bA2A3V1 959 aa13.01□□□□□ -0.33
Trim56-201ENSMUST00000054384 Patl1Q3TC46 770 aaKnown RBP13.01□□□□□ -0.33
Trim56-201ENSMUST00000054384 MtbpQ8BJS8 894 aaKnown RBP13.01□□□□□ -0.33
Trim56-201ENSMUST00000054384 Riox2Q8CD15 465 aa13.01□□□□□ -0.33
Trim56-201ENSMUST00000054384 Foxo3Q9WVH4 672 aa13.01□□□□□ -0.33
Trim56-201ENSMUST00000054384 Gm7995L7N2E4 160 aa13□□□□□ -0.33
Trim56-201ENSMUST00000054384 Atg16l1Q8C0J2 607 aa13□□□□□ -0.33
Trim56-201ENSMUST00000054384 Catsper1Q91ZR5 686 aa13□□□□□ -0.33
Trim56-201ENSMUST00000054384 4930449I24RikQ9D5E3 319 aa13□□□□□ -0.33
Trim56-201ENSMUST00000054384 Rmdn1Q9DCV4 305 aa13□□□□□ -0.33
Trim56-201ENSMUST00000054384 Znf467Q8JZL0 594 aa13□□□□□ -0.33
Trim56-201ENSMUST00000054384 Gnl1P36916 607 aa13□□□□□ -0.33
Trim56-201ENSMUST00000054384 Eya3P97480 510 aa13□□□□□ -0.33
Trim56-201ENSMUST00000054384 Krt80Q0VBK2 452 aa13□□□□□ -0.33
Trim56-201ENSMUST00000054384 Gucy2fQ5SDA5 1108 aa13□□□□□ -0.33
Trim56-201ENSMUST00000054384 Nudcd3Q8R1N4 363 aa13□□□□□ -0.33
Trim56-201ENSMUST00000054384 Kdm8Q9CXT6 414 aa13□□□□□ -0.33
Trim56-201ENSMUST00000054384 Sdr42e1Q9D665 394 aa13□□□□□ -0.33
Trim56-201ENSMUST00000054384 Rtn3Q9ES97 964 aa13□□□□□ -0.33
Trim56-201ENSMUST00000054384 Krt27Q9Z320 448 aa13□□□□□ -0.33
Trim56-201ENSMUST00000054384 TxkP42682 527 aa13□□□□□ -0.33
Trim56-201ENSMUST00000054384 Trappc10Q3TLI0 1259 aa13□□□□□ -0.33
Trim56-201ENSMUST00000054384 Pank4Q80YV4 820 aa13□□□□□ -0.33
Trim56-201ENSMUST00000054384 Ddx39aQ8VDW0 427 aaKnown RBP13□□□□□ -0.33
Trim56-201ENSMUST00000054384 ChmQ9QXG2 665 aa13□□□□□ -0.33
Trim56-201ENSMUST00000054384 Nlrp5Q9R1M5 1163 aa13□□□□□ -0.33
Trim56-201ENSMUST00000054384 NppbP40753 121 aa13□□□□□ -0.33
Trim56-201ENSMUST00000054384 Gm136Q3V037 328 aa13□□□□□ -0.33
Trim56-201ENSMUST00000054384 Zfyve19Q9DAZ9 389 aa13□□□□□ -0.33
Trim56-201ENSMUST00000054384 Med23Q80YQ2 1367 aa13□□□□□ -0.33
Trim56-201ENSMUST00000054384 Ncapd2Q8K2Z4 1392 aa13□□□□□ -0.33
Trim56-201ENSMUST00000054384 Prl3d1P18121 224 aa13□□□□□ -0.33
Trim56-201ENSMUST00000054384 Xrcc6P23475 608 aa13□□□□□ -0.33
Trim56-201ENSMUST00000054384 Tom1l2Q5SRX1 507 aa13□□□□□ -0.33
Trim56-201ENSMUST00000054384 Map3k7Q62073 579 aa13□□□□□ -0.33
Trim56-201ENSMUST00000054384 Nlrp9aQ66X03 949 aa13□□□□□ -0.33
Trim56-201ENSMUST00000054384 Ncoa7Q6DFV7 943 aa13□□□□□ -0.33
Trim56-201ENSMUST00000054384 Snx1Q9WV80 522 aa13□□□□□ -0.33
Trim56-201ENSMUST00000054384 Mcf2A2AEU1 1111 aa13□□□□□ -0.33
Trim56-201ENSMUST00000054384 Q3TTJ4 293 aa13□□□□□ -0.33
Trim56-201ENSMUST00000054384 Zfp51Q3U4L8 781 aa13□□□□□ -0.33
Trim56-201ENSMUST00000054384 Slc18a1Q8R090 521 aa13□□□□□ -0.33
Trim56-201ENSMUST00000054384 Pagr1bF6V0H0 108 aa12.99□□□□□ -0.33
Trim56-201ENSMUST00000054384 Slc3a2P10852 526 aaKnown RBP12.99□□□□□ -0.33
Trim56-201ENSMUST00000054384 Zc4h2Q68FG0 224 aa12.99□□□□□ -0.33
Trim56-201ENSMUST00000054384 ScocQ78YZ6 125 aa12.99□□□□□ -0.33
Trim56-201ENSMUST00000054384 Pagr1aQ99L02 253 aa12.99□□□□□ -0.33
Trim56-201ENSMUST00000054384 Ndc80Q9D0F1 642 aaKnown RBP12.99□□□□□ -0.33
Trim56-201ENSMUST00000054384 Tspan17Q9D7W4 270 aa12.99□□□□□ -0.33
Trim56-201ENSMUST00000054384 Arhgap17Q3UIA2 846 aa12.99□□□□□ -0.33
Trim56-201ENSMUST00000054384 OcrlQ6NVF0 900 aa12.99□□□□□ -0.33
Trim56-201ENSMUST00000054384 Brd2Q7JJ13 798 aaKnown RBP12.99□□□□□ -0.33
Trim56-201ENSMUST00000054384 Tor1aip1Q921T2 595 aaKnown RBP12.99□□□□□ -0.33
Trim56-201ENSMUST00000054384 Mfap3Q922T2 349 aa12.99□□□□□ -0.33
Trim56-201ENSMUST00000054384 Rhobtb1Q9DAK3 695 aa12.99□□□□□ -0.33
Trim56-201ENSMUST00000054384 Ets1P27577 440 aa12.99□□□□□ -0.33
Trim56-201ENSMUST00000054384 Rab20P35295 233 aa12.99□□□□□ -0.33
Trim56-201ENSMUST00000054384 Gpc4P51655 557 aa12.99□□□□□ -0.33
Trim56-201ENSMUST00000054384 PapolaQ61183 739 aa12.99□□□□□ -0.33
Trim56-201ENSMUST00000054384 Znf219Q6IQX8 726 aa12.99□□□□□ -0.33
Trim56-201ENSMUST00000054384 Ccdc40Q8BI79 1192 aa12.99□□□□□ -0.33
Trim56-201ENSMUST00000054384 Gm11985A0A1B0GS61 206 aa12.99□□□□□ -0.33
Trim56-201ENSMUST00000054384 Rint1Q8BZ36 792 aa12.99□□□□□ -0.33
Trim56-201ENSMUST00000054384 Bag5Q8CI32 447 aa12.99□□□□□ -0.33
Trim56-201ENSMUST00000054384 Ccnyl1D3YUJ3 367 aa12.99□□□□□ -0.33
Trim56-201ENSMUST00000054384 SelenovD3YXG1 328 aa12.99□□□□□ -0.33
Trim56-201ENSMUST00000054384 Art2bO35975 289 aa12.99□□□□□ -0.33
Trim56-201ENSMUST00000054384 Cfap70D3YVL2 1141 aa12.99□□□□□ -0.33
Trim56-201ENSMUST00000054384 Snx19Q6P4T1 997 aa12.99□□□□□ -0.33
Trim56-201ENSMUST00000054384 Klhl38Q8BSF5 581 aa12.99□□□□□ -0.33
Trim56-201ENSMUST00000054384 Ppme1Q8BVQ5 386 aa12.99□□□□□ -0.33
Trim56-201ENSMUST00000054384 Gtpbp6Q3U6U5 514 aa12.99□□□□□ -0.33
Trim56-201ENSMUST00000054384 Ahcyl2Q68FL4 613 aaKnown RBP12.99□□□□□ -0.33
Trim56-201ENSMUST00000054384 DohhA0A1Y7VJ29 135 aa12.99□□□□□ -0.33
Trim56-201ENSMUST00000054384 Caprin1Q60865 707 aaKnown RBP12.99□□□□□ -0.33
Trim56-201ENSMUST00000054384 Ccdc78D3Z5T1 437 aa12.98□□□□□ -0.33
Trim56-201ENSMUST00000054384 Trim5E9PV98 497 aa12.98□□□□□ -0.33
Trim56-201ENSMUST00000054384 Axin2O88566 840 aa12.98□□□□□ -0.33
Trim56-201ENSMUST00000054384 Vti1aO89116 217 aa12.98□□□□□ -0.33
Trim56-201ENSMUST00000054384 XlrP05531 208 aa12.98□□□□□ -0.33
Trim56-201ENSMUST00000054384 Prkab2Q6PAM0 271 aa12.98□□□□□ -0.33
Trim56-201ENSMUST00000054384 4932411N23RikQ8C0S0 470 aa12.98□□□□□ -0.33
Trim56-201ENSMUST00000054384 MlklQ9D2Y4 472 aa12.98□□□□□ -0.33
Trim56-201ENSMUST00000054384 InsrrQ9WTL4 1300 aa12.98□□□□□ -0.33
Trim56-201ENSMUST00000054384 Cdk13Q69ZA1 1511 aaKnown RBP12.98□□□□□ -0.33
Trim56-201ENSMUST00000054384 Atp8a2P98200 1148 aa12.98□□□□□ -0.33
Trim56-201ENSMUST00000054384 Gm12185Q5NCB2 835 aa12.98□□□□□ -0.33
Trim56-201ENSMUST00000054384 Tmem60Q8K174 133 aa12.98□□□□□ -0.33
Retrieved 100 of 22,080 RNA–protein pairs in 44.2 ms