RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 DDX1Q92499 740 aaKnown RBP1.53□□□□□ -2.16
VPS35-212ENST00000640313 PCSK5Q92824 1860 aa1.53□□□□□ -2.16
VPS35-212ENST00000640313 PLPPR2Q96GM1 343 aa1.53□□□□□ -2.16
VPS35-212ENST00000640313 SPATA25Q9BR10 227 aa1.53□□□□□ -2.16
VPS35-212ENST00000640313 SSBP3Q9BWW4 388 aaPredicted RBP1.53□□□□□ -2.16
VPS35-212ENST00000640313 BCO2Q9BYV7 579 aa1.53□□□□□ -2.16
VPS35-212ENST00000640313 C11orf21Q9P2W6 132 aa1.53□□□□□ -2.16
VPS35-212ENST00000640313 SUSD2Q9UGT4 822 aa1.53□□□□□ -2.16
VPS35-212ENST00000640313 BRPF3Q9ULD4 1205 aa1.53□□□□□ -2.16
VPS35-212ENST00000640313 MTMR7Q9Y216 660 aa1.53□□□□□ -2.16
VPS35-212ENST00000640313 A0A1B0GTL3 188 aa1.52□□□□□ -2.17
VPS35-212ENST00000640313 GFRA2O00451 464 aa1.52□□□□□ -2.17
VPS35-212ENST00000640313 USP2O75604 605 aaPredicted RBP1.52□□□□□ -2.17
VPS35-212ENST00000640313 MSL3P1P0C860 447 aa1.52□□□□□ -2.17
VPS35-212ENST00000640313 ARL4AP40617 200 aa1.52□□□□□ -2.17
VPS35-212ENST00000640313 LIMS1P48059 325 aa1.52□□□□□ -2.17
VPS35-212ENST00000640313 NCKAP1LP55160 1127 aa1.52□□□□□ -2.17
VPS35-212ENST00000640313 TGFB2P61812 414 aa1.52□□□□□ -2.17
VPS35-212ENST00000640313 PTPN11Q06124 597 aaPredicted RBP1.52□□□□□ -2.17
VPS35-212ENST00000640313 DLX2Q07687 328 aaPredicted RBP1.52□□□□□ -2.17
VPS35-212ENST00000640313 KLF10Q13118 480 aa1.52□□□□□ -2.17
VPS35-212ENST00000640313 TARBP2Q15633 366 aaKnown RBP1.52□□□□□ -2.17
VPS35-212ENST00000640313 TBC1D10BQ4KMP7 808 aaPredicted RBP1.52□□□□□ -2.17
VPS35-212ENST00000640313 GALNT18Q6P9A2 607 aa1.52□□□□□ -2.17
VPS35-212ENST00000640313 CEP128Q6ZU80 1094 aa1.52□□□□□ -2.17
VPS35-212ENST00000640313 MCATQ8IVS2 390 aaKnown RBP1.52□□□□□ -2.17
VPS35-212ENST00000640313 ADGRG2Q8IZP9 1017 aa1.52□□□□□ -2.17
VPS35-212ENST00000640313 CARFQ8N187 725 aa1.52□□□□□ -2.17
VPS35-212ENST00000640313 USHBP1Q8N6Y0 703 aa1.52□□□□□ -2.17
VPS35-212ENST00000640313 CHST13Q8NET6 341 aa1.52□□□□□ -2.17
VPS35-212ENST00000640313 ENOX1Q8TC92 643 aaKnown RBP1.52□□□□□ -2.17
VPS35-212ENST00000640313 ZNF526Q8TF50 670 aaPredicted RBP1.52□□□□□ -2.17
VPS35-212ENST00000640313 NAF1Q96HR8 494 aaKnown RBP1.52□□□□□ -2.17
VPS35-212ENST00000640313 MAP6Q96JE9 813 aa1.52□□□□□ -2.17
VPS35-212ENST00000640313 HHIPL1Q96JK4 782 aa1.52□□□□□ -2.17
VPS35-212ENST00000640313 PLCD4Q9BRC7 762 aa1.52□□□□□ -2.17
VPS35-212ENST00000640313 VPS11Q9H270 941 aa1.52□□□□□ -2.17
VPS35-212ENST00000640313 NLRP2Q9NX02 1062 aa1.52□□□□□ -2.17
VPS35-212ENST00000640313 TJP2Q9UDY2 1190 aa1.52□□□□□ -2.17
VPS35-212ENST00000640313 PPM1HQ9ULR3 514 aa1.52□□□□□ -2.17
VPS35-212ENST00000640313 LTBP3Q9NS15 1303 aa1.51□□□□□ -2.17
VPS35-212ENST00000640313 WTIPA6NIX2 430 aaPredicted RBP1.51□□□□□ -2.17
VPS35-212ENST00000640313 NDUFB5O43674 189 aa1.51□□□□□ -2.17
VPS35-212ENST00000640313 LRRN2O75325 713 aa1.51□□□□□ -2.17
VPS35-212ENST00000640313 AMHP03971 560 aa1.51□□□□□ -2.17
VPS35-212ENST00000640313 PLA2G1BP04054 148 aaKnown RBP1.51□□□□□ -2.17
VPS35-212ENST00000640313 RPL10P27635 214 aaKnown RBP1.51□□□□□ -2.17
VPS35-212ENST00000640313 MAPKAPK2P49137 400 aa1.51□□□□□ -2.17
VPS35-212ENST00000640313 ATXN1P54253 815 aaKnown RBP1.51□□□□□ -2.17
VPS35-212ENST00000640313 GJA9P57773 515 aa1.51□□□□□ -2.17
VPS35-212ENST00000640313 INHBEP58166 350 aa1.51□□□□□ -2.17
VPS35-212ENST00000640313 RTP1P59025 263 aa1.51□□□□□ -2.17
VPS35-212ENST00000640313 FOXO4P98177 505 aa1.51□□□□□ -2.17
VPS35-212ENST00000640313 NR1I3Q14994 352 aa1.51□□□□□ -2.17
VPS35-212ENST00000640313 RAB3GAP1Q15042 981 aa1.51□□□□□ -2.17
VPS35-212ENST00000640313 WIPI1Q5MNZ9 446 aaPredicted RBP1.51□□□□□ -2.17
VPS35-212ENST00000640313 LRCH2Q5VUJ6 765 aa1.51□□□□□ -2.17
VPS35-212ENST00000640313 NXPE4Q6UWF7 544 aa1.51□□□□□ -2.17
VPS35-212ENST00000640313 TPTE2Q6XPS3 522 aa1.51□□□□□ -2.17
VPS35-212ENST00000640313 RNF141Q8WVD5 230 aa1.51□□□□□ -2.17
VPS35-212ENST00000640313 KISS1RQ969F8 398 aaPredicted RBP1.51□□□□□ -2.17
VPS35-212ENST00000640313 PBXIP1Q96AQ6 731 aa1.51□□□□□ -2.17
VPS35-212ENST00000640313 ALKBH8Q96BT7 664 aaKnown RBP1.51□□□□□ -2.17
VPS35-212ENST00000640313 TMEM87BQ96K49 555 aa1.51□□□□□ -2.17
VPS35-212ENST00000640313 CDK5RAP1Q96SZ6 601 aaKnown RBP1.51□□□□□ -2.17
VPS35-212ENST00000640313 NIF3L1Q9GZT8 377 aa1.51□□□□□ -2.17
VPS35-212ENST00000640313 PRDM14Q9GZV8 571 aa1.51□□□□□ -2.17
VPS35-212ENST00000640313 TNFRSF12AQ9NP84 129 aa1.51□□□□□ -2.17
VPS35-212ENST00000640313 TNFRSF10DQ9UBN6 386 aa1.51□□□□□ -2.17
VPS35-212ENST00000640313 EGFL7Q9UHF1 273 aa1.51□□□□□ -2.17
VPS35-212ENST00000640313 ZMYM5Q9UJ78 669 aa1.51□□□□□ -2.17
VPS35-212ENST00000640313 ING1Q9UK53 422 aaPredicted RBP1.51□□□□□ -2.17
VPS35-212ENST00000640313 ADAM30Q9UKF2 790 aa1.51□□□□□ -2.17
VPS35-212ENST00000640313 ACSL6Q9UKU0 697 aa1.51□□□□□ -2.17
VPS35-212ENST00000640313 HS3ST3A1Q9Y663 406 aa1.51□□□□□ -2.17
VPS35-212ENST00000640313 SHISA3A0PJX4 238 aa1.5□□□□□ -2.17
VPS35-212ENST00000640313 TMEM82A0PJX8 343 aa1.5□□□□□ -2.17
VPS35-212ENST00000640313 FADS2P1A8MWK0 482 aa1.5□□□□□ -2.17
VPS35-212ENST00000640313 NUDT19A8MXV4 375 aa1.5□□□□□ -2.17
VPS35-212ENST00000640313 GPR182O15218 404 aa1.5□□□□□ -2.17
VPS35-212ENST00000640313 ICMTO60725 284 aa1.5□□□□□ -2.17
VPS35-212ENST00000640313 PGRP06401 933 aa1.5□□□□□ -2.17
VPS35-212ENST00000640313 GSTT1P30711 240 aa1.5□□□□□ -2.17
VPS35-212ENST00000640313 CDK8P49336 464 aa1.5□□□□□ -2.17
VPS35-212ENST00000640313 MVKQ03426 396 aa1.5□□□□□ -2.17
VPS35-212ENST00000640313 HSF5Q4G112 596 aaPredicted RBP1.5□□□□□ -2.17
VPS35-212ENST00000640313 CDCP2Q5VXM1 449 aa1.5□□□□□ -2.17
VPS35-212ENST00000640313 PCNX4Q63HM2 1172 aa1.5□□□□□ -2.17
VPS35-212ENST00000640313 PHLDB3Q6NSJ2 640 aa1.5□□□□□ -2.17
VPS35-212ENST00000640313 ZC3H14Q6PJT7 736 aaKnown RBP1.5□□□□□ -2.17
VPS35-212ENST00000640313 PI16Q6UXB8 463 aa1.5□□□□□ -2.17
VPS35-212ENST00000640313 RPTNQ6XPR3 784 aa1.5□□□□□ -2.17
VPS35-212ENST00000640313 PDZRN4Q6ZMN7 1036 aaPredicted RBP1.5□□□□□ -2.17
VPS35-212ENST00000640313 WAPLQ7Z5K2 1190 aa1.5□□□□□ -2.17
VPS35-212ENST00000640313 ZNF761Q86XN6 746 aaPredicted RBP1.5□□□□□ -2.17
VPS35-212ENST00000640313 DAGLBQ8NCG7 672 aa1.5□□□□□ -2.17
VPS35-212ENST00000640313 LINC00116Q8NCU8 138 aa1.5□□□□□ -2.17
VPS35-212ENST00000640313 SYTL5Q8TDW5 730 aaPredicted RBP1.5□□□□□ -2.17
VPS35-212ENST00000640313 CYB5D2Q8WUJ1 264 aa1.5□□□□□ -2.17
VPS35-212ENST00000640313 GAL3ST3Q96A11 431 aa1.5□□□□□ -2.17
Retrieved 100 of 20,778 RNA–protein pairs in 50.4 ms