RNA–Protein interactions for RNA: ENST00000527823.5

USP48-212, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 4

Gene USP48, Length 554 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-212ENST00000527823 NR5A1Q13285 461 aa10.16□□□□□ -0.78
USP48-212ENST00000527823 CDC42EP5Q6NZY7 148 aa10.16□□□□□ -0.78
USP48-212ENST00000527823 HHIPL2Q6UWX4 724 aa10.16□□□□□ -0.78
USP48-212ENST00000527823 VPS37DQ86XT2 251 aa10.16□□□□□ -0.78
USP48-212ENST00000527823 SCYL3Q8IZE3 742 aa10.16□□□□□ -0.78
USP48-212ENST00000527823 ARID3AQ99856 593 aa10.16□□□□□ -0.78
USP48-212ENST00000527823 FRMD4AQ9P2Q2 1039 aaPredicted RBP10.16□□□□□ -0.78
USP48-212ENST00000527823 SUGT1Q9Y2Z0 365 aa10.16□□□□□ -0.78
USP48-212ENST00000527823 KIF16BQ96L93 1317 aa10.15□□□□□ -0.78
USP48-212ENST00000527823 PHF20L1A8MW92 1017 aa10.15□□□□□ -0.78
USP48-212ENST00000527823 ERVH48-1M5A8F1 160 aa10.15□□□□□ -0.78
USP48-212ENST00000527823 GFRA3O60609 400 aa10.15□□□□□ -0.78
USP48-212ENST00000527823 HMGCRP04035 888 aa10.15□□□□□ -0.78
USP48-212ENST00000527823 SLURP2P0DP57 97 aa10.15□□□□□ -0.78
USP48-212ENST00000527823 SKIP12755 728 aa10.15□□□□□ -0.78
USP48-212ENST00000527823 PTPRAP18433 802 aa10.15□□□□□ -0.78
USP48-212ENST00000527823 NNTQ13423 1086 aa10.15□□□□□ -0.78
USP48-212ENST00000527823 LRRC24Q50LG9 513 aa10.15□□□□□ -0.78
USP48-212ENST00000527823 RNF20Q5VTR2 975 aa10.15□□□□□ -0.78
USP48-212ENST00000527823 GADL1Q6ZQY3 521 aa10.15□□□□□ -0.78
USP48-212ENST00000527823 TBC1D9Q6ZT07 1266 aa10.15□□□□□ -0.78
USP48-212ENST00000527823 CCDC84Q86UT8 332 aaPredicted RBP10.15□□□□□ -0.78
USP48-212ENST00000527823 ZFPM1Q8IX07 1006 aa10.15□□□□□ -0.78
USP48-212ENST00000527823 SMCR8Q8TEV9 937 aaPredicted RBP10.15□□□□□ -0.78
USP48-212ENST00000527823 CCDC97Q96F63 343 aaPredicted RBP10.15□□□□□ -0.78
USP48-212ENST00000527823 MRIQ9BWK5 157 aa10.15□□□□□ -0.78
USP48-212ENST00000527823 UBE2OQ9C0C9 1292 aaKnown RBP10.15□□□□□ -0.78
USP48-212ENST00000527823 C11orf49Q9H6J7 331 aa10.15□□□□□ -0.78
USP48-212ENST00000527823 TFIP11Q9UBB9 837 aaKnown RBP10.15□□□□□ -0.78
USP48-212ENST00000527823 SLC45A1Q9Y2W3 748 aa10.15□□□□□ -0.78
USP48-212ENST00000527823 CDK5RAP2Q96SN8 1893 aa10.15□□□□□ -0.79
USP48-212ENST00000527823 RLFQ13129 1914 aa10.14□□□□□ -0.79
USP48-212ENST00000527823 FRAT2O75474 233 aaPredicted RBP10.14□□□□□ -0.79
USP48-212ENST00000527823 PRDX5P30044 214 aa10.14□□□□□ -0.79
USP48-212ENST00000527823 FAM110CQ1W6H9 321 aa10.14□□□□□ -0.79
USP48-212ENST00000527823 CCDC27Q2M243 656 aa10.14□□□□□ -0.79
USP48-212ENST00000527823 METTL24Q5JXM2 366 aa10.14□□□□□ -0.79
USP48-212ENST00000527823 TREML2Q5T2D2 321 aa10.14□□□□□ -0.79
USP48-212ENST00000527823 CCDC116Q8IYX3 515 aa10.14□□□□□ -0.79
USP48-212ENST00000527823 ANKRD13CQ8N6S4 541 aa10.14□□□□□ -0.79
USP48-212ENST00000527823 AFG3L2Q9Y4W6 797 aa10.14□□□□□ -0.79
USP48-212ENST00000527823 ZHX2Q9Y6X8 837 aa10.14□□□□□ -0.79
USP48-212ENST00000527823 IL16Q14005 1332 aa10.13□□□□□ -0.79
USP48-212ENST00000527823 FOCADQ5VW36 1801 aa10.13□□□□□ -0.79
USP48-212ENST00000527823 PALM3A6NDB9 673 aaPredicted RBP10.13□□□□□ -0.79
USP48-212ENST00000527823 PDE8BO95263 885 aa10.13□□□□□ -0.79
USP48-212ENST00000527823 FGFR2P21802 821 aa10.13□□□□□ -0.79
USP48-212ENST00000527823 RABL6Q3YEC7 729 aaPredicted RBP10.13□□□□□ -0.79
USP48-212ENST00000527823 CAVIN4Q5BKX8 364 aa10.13□□□□□ -0.79
USP48-212ENST00000527823 FASTKD5Q7L8L6 764 aaKnown RBP10.13□□□□□ -0.79
USP48-212ENST00000527823 ANKRD44Q8N8A2 993 aa10.13□□□□□ -0.79
USP48-212ENST00000527823 TRIB2Q92519 343 aa10.13□□□□□ -0.79
USP48-212ENST00000527823 HPS1Q92902 700 aa10.13□□□□□ -0.79
USP48-212ENST00000527823 COA7Q96BR5 231 aa10.13□□□□□ -0.79
USP48-212ENST00000527823 PPP1R12CQ9BZL4 782 aa10.13□□□□□ -0.79
USP48-212ENST00000527823 BICC1Q9H694 974 aaKnown RBP10.13□□□□□ -0.79
USP48-212ENST00000527823 PRKRIP1Q9H875 184 aaPredicted RBP10.13□□□□□ -0.79
USP48-212ENST00000527823 TMPRSS4Q9NRS4 437 aa10.13□□□□□ -0.79
USP48-212ENST00000527823 OGDHLQ9ULD0 1010 aa10.13□□□□□ -0.79
USP48-212ENST00000527823 AGTPBP1Q9UPW5 1226 aa10.13□□□□□ -0.79
USP48-212ENST00000527823 PCDHB11Q9Y5F2 797 aa10.13□□□□□ -0.79
USP48-212ENST00000527823 FAM187AA6NFU0 413 aa10.12□□□□□ -0.79
USP48-212ENST00000527823 TRIM75PA6NK02 468 aa10.12□□□□□ -0.79
USP48-212ENST00000527823 VAMP4O75379 141 aa10.12□□□□□ -0.79
USP48-212ENST00000527823 NBPF7P0C2Y1 421 aaPredicted RBP10.12□□□□□ -0.79
USP48-212ENST00000527823 RGS3P49796 1198 aa10.12□□□□□ -0.79
USP48-212ENST00000527823 DDX10Q13206 875 aaKnown RBP10.12□□□□□ -0.79
USP48-212ENST00000527823 PPP1R26Q5T8A7 1209 aaPredicted RBP10.12□□□□□ -0.79
USP48-212ENST00000527823 MAP3K21Q5TCX8 1036 aa10.12□□□□□ -0.79
USP48-212ENST00000527823 PLPP7Q8NBV4 271 aa10.12□□□□□ -0.79
USP48-212ENST00000527823 KLHDC4Q8TBB5 520 aa10.12□□□□□ -0.79
USP48-212ENST00000527823 PICK1Q9NRD5 415 aa10.12□□□□□ -0.79
USP48-212ENST00000527823 UTYO14607 1347 aa10.11□□□□□ -0.79
USP48-212ENST00000527823 ATP9BO43861 1147 aa10.11□□□□□ -0.79
USP48-212ENST00000527823 ALDH1L1O75891 902 aa10.11□□□□□ -0.79
USP48-212ENST00000527823 COL6A1P12109 1028 aa10.11□□□□□ -0.79
USP48-212ENST00000527823 PUM3Q15397 648 aaKnown RBP10.11□□□□□ -0.79
USP48-212ENST00000527823 LRRC26Q2I0M4 334 aa10.11□□□□□ -0.79
USP48-212ENST00000527823 DEPDC4Q8N2C3 294 aa10.11□□□□□ -0.79
USP48-212ENST00000527823 FAM161BQ96MY7 647 aa10.11□□□□□ -0.79
USP48-212ENST00000527823 C9orf78Q9NZ63 289 aaPredicted RBP10.11□□□□□ -0.79
USP48-212ENST00000527823 GJD2Q9UKL4 321 aa10.11□□□□□ -0.79
USP48-212ENST00000527823 DOLKQ9UPQ8 538 aa10.11□□□□□ -0.79
USP48-212ENST00000527823 GAKO14976 1311 aa10.1□□□□□ -0.79
USP48-212ENST00000527823 DDTLA6NHG4 134 aaPredicted RBP10.1□□□□□ -0.79
USP48-212ENST00000527823 RFX1P22670 979 aa10.1□□□□□ -0.79
USP48-212ENST00000527823 DHX9Q08211 1270 aaKnown RBP10.1□□□□□ -0.79
USP48-212ENST00000527823 FAM109BQ6ICB4 259 aaPredicted RBP10.1□□□□□ -0.79
USP48-212ENST00000527823 WDR66Q8TBY9 1149 aa10.1□□□□□ -0.79
USP48-212ENST00000527823 DDX4Q9NQI0 724 aaKnown RBP10.1□□□□□ -0.79
USP48-212ENST00000527823 PRDM6Q9NQX0 595 aa10.1□□□□□ -0.79
USP48-212ENST00000527823 FAM196BA6NMK8 535 aa10.09□□□□□ -0.79
USP48-212ENST00000527823 USP17L5A8MUK1 530 aa10.09□□□□□ -0.79
USP48-212ENST00000527823 NRG2O14511 850 aaPredicted RBP10.09□□□□□ -0.79
USP48-212ENST00000527823 IFIT1P09914 478 aaKnown RBP10.09□□□□□ -0.79
USP48-212ENST00000527823 WDR4P57081 412 aaKnown RBP10.09□□□□□ -0.79
USP48-212ENST00000527823 MAP3K10Q02779 954 aa10.09□□□□□ -0.79
USP48-212ENST00000527823 EXOSC9Q06265 439 aaKnown RBP10.09□□□□□ -0.79
USP48-212ENST00000527823 OXLD1Q5BKU9 147 aa10.09□□□□□ -0.79
USP48-212ENST00000527823 TRAF7Q6Q0C0 670 aa10.09□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 993.4 ms