RNA–Protein interactions for RNA: ENST00000523488.5

CSMD1-213, Transcript of CUB and Sushi multiple domains 1, humanhuman

TSL 1 (best)

Gene CSMD1, Length 3,714 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD1-213ENST00000523488 OAS1P00973 400 aaKnown RBP9.41□□□□□ -0.9
CSMD1-213ENST00000523488 CEBPAP49715 358 aaPredicted RBP9.41□□□□□ -0.9
CSMD1-213ENST00000523488 MCMDC2Q4G0Z9 681 aa9.41□□□□□ -0.9
CSMD1-213ENST00000523488 ANKRD20A8PQ5CZ79 823 aa9.41□□□□□ -0.9
CSMD1-213ENST00000523488 TNFAIP8L3Q5GJ75 292 aa9.41□□□□□ -0.9
CSMD1-213ENST00000523488 AP1ARQ63HQ0 302 aa9.41□□□□□ -0.9
CSMD1-213ENST00000523488 FOXR2Q6PJQ5 311 aa9.41□□□□□ -0.9
CSMD1-213ENST00000523488 STK11IPQ8N1F8 1099 aa9.41□□□□□ -0.9
CSMD1-213ENST00000523488 CCDC155Q8N6L0 562 aa9.41□□□□□ -0.9
CSMD1-213ENST00000523488 DRAXINQ8NBI3 349 aaPredicted RBP9.41□□□□□ -0.9
CSMD1-213ENST00000523488 CCT6BQ92526 530 aa9.41□□□□□ -0.9
CSMD1-213ENST00000523488 CTAGE1Q96RT6 745 aa9.41□□□□□ -0.9
CSMD1-213ENST00000523488 CD248Q9HCU0 757 aa9.41□□□□□ -0.9
CSMD1-213ENST00000523488 DACH1Q9UI36 760 aa9.41□□□□□ -0.9
CSMD1-213ENST00000523488 A0A1W2PQJ5 194 aa9.4□□□□□ -0.9
CSMD1-213ENST00000523488 PPP1R3GB7ZBB8 358 aa9.4□□□□□ -0.9
CSMD1-213ENST00000523488 IFIT3O14879 490 aaKnown RBP9.4□□□□□ -0.9
CSMD1-213ENST00000523488 AHCYL1O43865 530 aa9.4□□□□□ -0.9
CSMD1-213ENST00000523488 PTPREP23469 700 aa9.4□□□□□ -0.9
CSMD1-213ENST00000523488 CKAP4Q07065 602 aaKnown RBP9.4□□□□□ -0.9
CSMD1-213ENST00000523488 TMED8Q6PL24 325 aaPredicted RBP9.4□□□□□ -0.9
CSMD1-213ENST00000523488 CALR3Q96L12 384 aaKnown RBP9.4□□□□□ -0.9
CSMD1-213ENST00000523488 MTA3Q9BTC8 594 aa9.4□□□□□ -0.9
CSMD1-213ENST00000523488 MYO1FO00160 1098 aa9.4□□□□□ -0.9
CSMD1-213ENST00000523488 PAX7P23759 505 aa9.4□□□□□ -0.9
CSMD1-213ENST00000523488 SLC8A1P32418 973 aa9.4□□□□□ -0.9
CSMD1-213ENST00000523488 ZNF268Q14587 947 aaPredicted RBP9.4□□□□□ -0.9
CSMD1-213ENST00000523488 ZNF473Q8WTR7 871 aaKnown RBP9.4□□□□□ -0.9
CSMD1-213ENST00000523488 SH3GL3Q99963 347 aa9.4□□□□□ -0.9
CSMD1-213ENST00000523488 ZNF142P52746 1687 aaPredicted RBP9.4□□□□□ -0.91
CSMD1-213ENST00000523488 ERICH2A1L162 156 aa9.4□□□□□ -0.91
CSMD1-213ENST00000523488 LSP1P33241 339 aa9.4□□□□□ -0.91
CSMD1-213ENST00000523488 GCKP35557 465 aa9.4□□□□□ -0.91
CSMD1-213ENST00000523488 RBL2Q08999 1139 aa9.4□□□□□ -0.91
CSMD1-213ENST00000523488 PDIA6Q15084 440 aa9.4□□□□□ -0.91
CSMD1-213ENST00000523488 WDR59Q6PJI9 974 aa9.4□□□□□ -0.91
CSMD1-213ENST00000523488 MYCBPAPQ8TBZ2 947 aa9.4□□□□□ -0.91
CSMD1-213ENST00000523488 CCHCR1Q8TD31 782 aa9.4□□□□□ -0.91
CSMD1-213ENST00000523488 ZNF526Q8TF50 670 aaPredicted RBP9.4□□□□□ -0.91
CSMD1-213ENST00000523488 OSBPL7Q9BZF2 842 aa9.4□□□□□ -0.91
CSMD1-213ENST00000523488 NDST4Q9H3R1 872 aa9.4□□□□□ -0.91
CSMD1-213ENST00000523488 EPB41L3Q9Y2J2 1087 aaPredicted RBP9.4□□□□□ -0.91
CSMD1-213ENST00000523488 SH3BP1Q9Y3L3 701 aa9.4□□□□□ -0.91
CSMD1-213ENST00000523488 TTC36A6NLP5 189 aa9.39□□□□□ -0.91
CSMD1-213ENST00000523488 E7EWF7 191 aa9.39□□□□□ -0.91
CSMD1-213ENST00000523488 ABL1P00519 1130 aa9.39□□□□□ -0.91
CSMD1-213ENST00000523488 EPHB4P54760 987 aa9.39□□□□□ -0.91
CSMD1-213ENST00000523488 CCDC40Q4G0X9 1142 aa9.39□□□□□ -0.91
CSMD1-213ENST00000523488 MIS18BP1Q6P0N0 1132 aa9.39□□□□□ -0.91
CSMD1-213ENST00000523488 PARP9Q8IXQ6 854 aa9.39□□□□□ -0.91
CSMD1-213ENST00000523488 CAGE1Q8TC20 777 aa9.39□□□□□ -0.91
CSMD1-213ENST00000523488 RIN2Q8WYP3 895 aaPredicted RBP9.39□□□□□ -0.91
CSMD1-213ENST00000523488 SCLT1Q96NL6 688 aa9.39□□□□□ -0.91
CSMD1-213ENST00000523488 MMS19Q96T76 1030 aa9.39□□□□□ -0.91
CSMD1-213ENST00000523488 MMTAG2Q9BU76 263 aaKnown RBP9.39□□□□□ -0.91
CSMD1-213ENST00000523488 LRRC2Q9BYS8 371 aa9.39□□□□□ -0.91
CSMD1-213ENST00000523488 TXLNGYQ9BZA5 131 aa9.39□□□□□ -0.91
CSMD1-213ENST00000523488 RBAK-RBAKDNI3L0D1 243 aa9.39□□□□□ -0.91
CSMD1-213ENST00000523488 SSBP05455 408 aaKnown RBP eCLIP9.39□□□□□ -0.91
CSMD1-213ENST00000523488 HSPA9P38646 679 aaKnown RBP9.39□□□□□ -0.91
CSMD1-213ENST00000523488 ANTXR2P58335 489 aa9.39□□□□□ -0.91
CSMD1-213ENST00000523488 CCT2P78371 535 aaKnown RBP9.39□□□□□ -0.91
CSMD1-213ENST00000523488 CYB5D1Q6P9G0 228 aa9.39□□□□□ -0.91
CSMD1-213ENST00000523488 CYP26C1Q6V0L0 522 aa9.39□□□□□ -0.91
CSMD1-213ENST00000523488 FAM43BQ6ZT52 329 aaPredicted RBP9.39□□□□□ -0.91
CSMD1-213ENST00000523488 KBTBD3Q8NAB2 608 aa9.39□□□□□ -0.91
CSMD1-213ENST00000523488 EYA1Q99502 592 aa9.39□□□□□ -0.91
CSMD1-213ENST00000523488 TLR7Q9NYK1 1049 aaKnown RBP9.39□□□□□ -0.91
CSMD1-213ENST00000523488 CPSF2Q9P2I0 782 aaKnown RBP9.39□□□□□ -0.91
CSMD1-213ENST00000523488 DDX60LQ5H9U9 1706 aaKnown RBP9.39□□□□□ -0.91
CSMD1-213ENST00000523488 GOLGA6L7A0A1B0GV03 622 aa9.39□□□□□ -0.91
CSMD1-213ENST00000523488 TRAPPC3O43617 180 aa9.39□□□□□ -0.91
CSMD1-213ENST00000523488 POLR3DP05423 398 aaPredicted RBP9.39□□□□□ -0.91
CSMD1-213ENST00000523488 ECHS1P30084 290 aa9.39□□□□□ -0.91
CSMD1-213ENST00000523488 RAB27AP51159 221 aa9.39□□□□□ -0.91
CSMD1-213ENST00000523488 CCNHP51946 323 aaPredicted RBP9.39□□□□□ -0.91
CSMD1-213ENST00000523488 CTDSPL2Q05D32 466 aa9.39□□□□□ -0.91
CSMD1-213ENST00000523488 G3BP1Q13283 466 aaKnown RBP eCLIP9.39□□□□□ -0.91
CSMD1-213ENST00000523488 SGSM1Q2NKQ1 1148 aa9.39□□□□□ -0.91
CSMD1-213ENST00000523488 LONRF3Q496Y0 759 aa9.39□□□□□ -0.91
CSMD1-213ENST00000523488 KLHDC4Q8TBB5 520 aa9.39□□□□□ -0.91
CSMD1-213ENST00000523488 PHAXQ9H814 394 aaKnown RBP9.39□□□□□ -0.91
CSMD1-213ENST00000523488 SPATS2LQ9NUQ6 558 aaKnown RBP9.39□□□□□ -0.91
CSMD1-213ENST00000523488 TBC1D30Q9Y2I9 924 aa9.39□□□□□ -0.91
CSMD1-213ENST00000523488 PCDHA5Q9Y5H7 936 aa9.39□□□□□ -0.91
CSMD1-213ENST00000523488 DUOX1Q9NRD9 1551 aa9.38□□□□□ -0.91
CSMD1-213ENST00000523488 GOLGA6BA6NDN3 693 aa9.38□□□□□ -0.91
CSMD1-213ENST00000523488 RASSF10A6NK89 507 aa9.38□□□□□ -0.91
CSMD1-213ENST00000523488 PDE2AO00408 941 aaPredicted RBP9.38□□□□□ -0.91
CSMD1-213ENST00000523488 OPA1O60313 960 aa9.38□□□□□ -0.91
CSMD1-213ENST00000523488 PECAM1P16284 738 aaPredicted RBP9.38□□□□□ -0.91
CSMD1-213ENST00000523488 RWDD2BP57060 319 aa9.38□□□□□ -0.91
CSMD1-213ENST00000523488 DPYDQ12882 1025 aa9.38□□□□□ -0.91
CSMD1-213ENST00000523488 GALNTL6Q49A17 601 aa9.38□□□□□ -0.91
CSMD1-213ENST00000523488 NBPF15Q8N660 670 aa9.38□□□□□ -0.91
CSMD1-213ENST00000523488 CCDC114Q96M63 670 aa9.38□□□□□ -0.91
CSMD1-213ENST00000523488 PPP1R37O75864 691 aa9.38□□□□□ -0.91
CSMD1-213ENST00000523488 FXR1P51114 621 aaKnown RBP eCLIP9.38□□□□□ -0.91
CSMD1-213ENST00000523488 TRAF1Q13077 416 aa9.38□□□□□ -0.91
CSMD1-213ENST00000523488 KANK3Q6NY19 840 aa9.38□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 142.6 ms