RNA–Protein interactions for RNA: YLR220W

CCC1, Transcript of Vacuolar Fe2+/Mn2+ transporter, yeast

Gene CCC1, Length 969 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CCC1	YLR220W	FAR8	Q05040	523 aa		15.56	■□□□□ 0.08
CCC1	YLR220W	VHS3	Q08438	674 aa		15.56	■□□□□ 0.08
CCC1	YLR220W	BEM2	P39960	2167 aa	Known RBP	15.55	■□□□□ 0.08
CCC1	YLR220W	GLN4	P13188	809 aa	Known RBP	15.55	■□□□□ 0.08
CCC1	YLR220W	SRV2	P17555	526 aa	Known RBP	15.55	■□□□□ 0.08
CCC1	YLR220W	BEM1	P29366	551 aa		15.55	■□□□□ 0.08
CCC1	YLR220W	DSF2	P38213	736 aa		15.55	■□□□□ 0.08
CCC1	YLR220W	YSW1	P38280	609 aa		15.55	■□□□□ 0.08
CCC1	YLR220W	FMO1	P38866	432 aa		15.55	■□□□□ 0.08
CCC1	YLR220W	SEC28	P40509	296 aa	Known RBP	15.55	■□□□□ 0.08
CCC1	YLR220W	SER33	P40510	469 aa		15.55	■□□□□ 0.08
CCC1	YLR220W	TFG1	P41895	735 aa	Predicted RBP	15.55	■□□□□ 0.08
CCC1	YLR220W	BIO4	P53630	237 aa		15.55	■□□□□ 0.08
CCC1	YLR220W	YNL143C	P53908	130 aa		15.55	■□□□□ 0.08
CCC1	YLR220W	YNL058C	P53947	316 aa		15.55	■□□□□ 0.08
CCC1	YLR220W	CLU1	Q03690	1277 aa	Known RBP	15.55	■□□□□ 0.08
CCC1	YLR220W	HPF1	Q05164	967 aa		15.55	■□□□□ 0.08
CCC1	YLR220W	NUT2	Q06213	157 aa		15.55	■□□□□ 0.08
CCC1	YLR220W	HOM2	P13663	365 aa	Known RBP	15.54	■□□□□ 0.08
CCC1	YLR220W	AMD1	P15274	810 aa	Known RBP	15.54	■□□□□ 0.08
CCC1	YLR220W	AMD2	P22580	549 aa		15.54	■□□□□ 0.08
CCC1	YLR220W	CYM1	P32898	989 aa		15.54	■□□□□ 0.08
CCC1	YLR220W	CSE1	P33307	960 aa		15.54	■□□□□ 0.08
CCC1	YLR220W	ACO2	P39533	789 aa		15.54	■□□□□ 0.08
CCC1	YLR220W	ALG8	P40351	577 aa		15.54	■□□□□ 0.08
CCC1	YLR220W	GTS1	P40956	396 aa		15.54	■□□□□ 0.08
CCC1	YLR220W	VAC7	P53950	1165 aa		15.54	■□□□□ 0.08
CCC1	YLR220W	SPP2	Q02521	185 aa		15.54	■□□□□ 0.08
CCC1	YLR220W	RPN9	Q04062	393 aa	Known RBP	15.54	■□□□□ 0.08
CCC1	YLR220W	OMS1	Q06668	471 aa		15.54	■□□□□ 0.08
CCC1	YLR220W	GCY1	P14065	312 aa	Known RBP RIP-Chip data	15.53	■□□□□ 0.08	not detected
CCC1	YLR220W	SRP72	P38688	640 aa	Known RBP	15.53	■□□□□ 0.08
CCC1	YLR220W	LRP1	P38801	184 aa	Known RBP	15.53	■□□□□ 0.08
CCC1	YLR220W	YGL140C	P53120	1219 aa		15.53	■□□□□ 0.08
CCC1	YLR220W	HBT1	Q07653	1046 aa	Known RBP	15.53	■□□□□ 0.08
CCC1	YLR220W	HRK1	Q08732	759 aa	Known RBP	15.53	■□□□□ 0.08
CCC1	YLR220W	YLR053C	Q12026	108 aa		15.53	■□□□□ 0.08
CCC1	YLR220W	NSP1	P14907	823 aa	Known RBP	15.52	■□□□□ 0.08
CCC1	YLR220W	UBA1	P22515	1024 aa	Known RBP	15.52	■□□□□ 0.08
CCC1	YLR220W	SEC14	P24280	304 aa	Known RBP	15.52	■□□□□ 0.08
CCC1	YLR220W	PEP8	P40335	379 aa		15.52	■□□□□ 0.08
CCC1	YLR220W	YMR030W-A	Q3E760	96 aa		15.52	■□□□□ 0.08
CCC1	YLR220W	RGS2	Q99188	309 aa		15.52	■□□□□ 0.08
CCC1	YLR220W	STE2	D6VTK4	431 aa		15.51	■□□□□ 0.07
CCC1	YLR220W	MPH2	P0CD99	609 aa		15.51	■□□□□ 0.07
CCC1	YLR220W	APA1	P16550	321 aa	Known RBP	15.51	■□□□□ 0.07
CCC1	YLR220W	GAL11	P19659	1081 aa		15.51	■□□□□ 0.07
CCC1	YLR220W	HCM1	P25364	564 aa		15.51	■□□□□ 0.07
CCC1	YLR220W	MSH1	P25846	959 aa		15.51	■□□□□ 0.07
CCC1	YLR220W	SPS19	P32573	292 aa	Known RBP	15.51	■□□□□ 0.07
CCC1	YLR220W	YBR032W	P38223	100 aa		15.51	■□□□□ 0.07
CCC1	YLR220W	PIK1	P39104	1066 aa		15.51	■□□□□ 0.07
CCC1	YLR220W	HAT2	P39984	401 aa		15.51	■□□□□ 0.07
CCC1	YLR220W	PET130	P47065	347 aa		15.51	■□□□□ 0.07
CCC1	YLR220W	LIA1	P47120	325 aa	Known RBP	15.51	■□□□□ 0.07
CCC1	YLR220W	FAA4	P47912	694 aa	Known RBP	15.51	■□□□□ 0.07
CCC1	YLR220W	COG7	P53195	279 aa		15.51	■□□□□ 0.07
CCC1	YLR220W	YLR177W	Q06251	628 aa		15.51	■□□□□ 0.07
CCC1	YLR220W	YCR099C	P25657	155 aa		15.5	■□□□□ 0.07
CCC1	YLR220W	MRPL9	P31334	269 aa		15.5	■□□□□ 0.07
CCC1	YLR220W	YBR259W	P38338	688 aa		15.5	■□□□□ 0.07
CCC1	YLR220W	STN1	P38960	494 aa		15.5	■□□□□ 0.07
CCC1	YLR220W	YJR061W	P40355	935 aa		15.5	■□□□□ 0.07
CCC1	YLR220W	IME4	P41833	600 aa		15.5	■□□□□ 0.07
CCC1	YLR220W	MTO1	P53070	669 aa		15.5	■□□□□ 0.07
CCC1	YLR220W	CIA1	Q05583	330 aa		15.5	■□□□□ 0.07
CCC1	YLR220W	TGL5	Q12043	749 aa		15.5	■□□□□ 0.07
CCC1	YLR220W	GCD11	P32481	527 aa	Known RBP	15.49	■□□□□ 0.07
CCC1	YLR220W	STB6	P36085	766 aa		15.49	■□□□□ 0.07
CCC1	YLR220W	YHR078W	P38799	552 aa		15.49	■□□□□ 0.07
CCC1	YLR220W	YHR182W	P38870	785 aa		15.49	■□□□□ 0.07
CCC1	YLR220W	TIM17	P39515	158 aa		15.49	■□□□□ 0.07
CCC1	YLR220W	NPY1	P53164	384 aa		15.49	■□□□□ 0.07
CCC1	YLR220W	RCF2	P53721	224 aa		15.49	■□□□□ 0.07
CCC1	YLR220W	FRE4	P53746	719 aa		15.49	■□□□□ 0.07
CCC1	YLR220W	TAF11	Q04226	346 aa		15.49	■□□□□ 0.07
CCC1	YLR220W	RPC11	Q04307	110 aa	Predicted RBP	15.49	■□□□□ 0.07
CCC1	YLR220W	NUS1	Q12063	375 aa		15.49	■□□□□ 0.07
CCC1	YLR220W	MF(ALPHA)2	P32435	120 aa		15.48	■□□□□ 0.07
CCC1	YLR220W	LRG1	P35688	1017 aa		15.48	■□□□□ 0.07
CCC1	YLR220W	DSN1	P40568	576 aa		15.48	■□□□□ 0.07
CCC1	YLR220W	AQR1	P53943	586 aa		15.48	■□□□□ 0.07
CCC1	YLR220W	YMR209C	Q03648	457 aa		15.48	■□□□□ 0.07
CCC1	YLR220W	TRX2	P22803	104 aa	Known RBP	15.47	■□□□□ 0.07
CCC1	YLR220W	PHO3	P24031	467 aa		15.47	■□□□□ 0.07
CCC1	YLR220W	RRP14	P36080	434 aa	Known RBP	15.47	■□□□□ 0.07
CCC1	YLR220W	LIN1	P38852	340 aa	Predicted RBP	15.47	■□□□□ 0.07
CCC1	YLR220W	OAF1	P39720	1047 aa	Predicted RBP	15.47	■□□□□ 0.07
CCC1	YLR220W	PFK26	P40433	827 aa	Known RBP	15.47	■□□□□ 0.07
CCC1	YLR220W	HOS4	P40480	1083 aa		15.47	■□□□□ 0.07
CCC1	YLR220W	SWC4	P53201	476 aa		15.47	■□□□□ 0.07
CCC1	YLR220W	CWC24	P53769	259 aa		15.47	■□□□□ 0.07
CCC1	YLR220W	BUD7	Q08754	746 aa		15.47	■□□□□ 0.07
CCC1	YLR220W	SAM4	Q08985	325 aa	Known RBP	15.47	■□□□□ 0.07
CCC1	YLR220W	GNT1	Q12096	491 aa		15.47	■□□□□ 0.07
CCC1	YLR220W	RAD3	P06839	778 aa		15.46	■□□□□ 0.07
CCC1	YLR220W	ABF1	P14164	731 aa		15.46	■□□□□ 0.07
CCC1	YLR220W	CHL1	P22516	861 aa	Predicted RBP	15.46	■□□□□ 0.07
CCC1	YLR220W	CCR4	P31384	837 aa	Known RBP	15.46	■□□□□ 0.07
CCC1	YLR220W	DBP8	P38719	431 aa		15.46	■□□□□ 0.07

Retrieved 100 of 5,963 RNA–protein pairs in 52.4 ms