RNA–Protein interactions for RNA: YAL013W

DEP1, Transcript of Component of the Rpd3L histone deacetylase complex, yeastyeast

Gene DEP1, Length 1,218 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
DEP1YAL013W LIP5P32875 414 aa14.11□□□□□ -0.15
DEP1YAL013W SRP72P38688 640 aaKnown RBP14.11□□□□□ -0.15
DEP1YAL013W CHS6P40955 746 aa14.11□□□□□ -0.15
DEP1YAL013W YVH1Q02256 364 aaKnown RBP14.11□□□□□ -0.15
DEP1YAL013W TVP15Q03860 143 aa14.11□□□□□ -0.15
DEP1YAL013W RPN9Q04062 393 aaKnown RBP14.11□□□□□ -0.15
DEP1YAL013W YPR114WQ06107 315 aa14.11□□□□□ -0.15
DEP1YAL013W TMA46Q12000 345 aaKnown RBP14.11□□□□□ -0.15
DEP1YAL013W TRX2P22803 104 aaKnown RBP14.1□□□□□ -0.15
DEP1YAL013W CLB1P24868 471 aa14.1□□□□□ -0.15
DEP1YAL013W TFC3P34111 1160 aa14.1□□□□□ -0.15
DEP1YAL013W VRP1P37370 817 aa14.1□□□□□ -0.15
DEP1YAL013W MAK5P38112 773 aaPredicted RBP14.1□□□□□ -0.15
DEP1YAL013W LDB7P38210 180 aa14.1□□□□□ -0.15
DEP1YAL013W FLC3P53121 802 aa14.1□□□□□ -0.15
DEP1YAL013W GSF2Q04697 403 aaKnown RBP14.1□□□□□ -0.15
DEP1YAL013W NUT2Q06213 157 aa14.1□□□□□ -0.15
DEP1YAL013W APC9Q12107 265 aa14.1□□□□□ -0.15
DEP1YAL013W CHS5Q12114 671 aaKnown RBP14.1□□□□□ -0.15
DEP1YAL013W YOL087CQ99247 1116 aa14.1□□□□□ -0.15
DEP1YAL013W YOR338WQ99326 363 aa14.1□□□□□ -0.15
DEP1YAL013W YCR099CP25657 155 aa14.09□□□□□ -0.15
DEP1YAL013W CTP1P38152 299 aa14.09□□□□□ -0.15
DEP1YAL013W ACO2P39533 789 aa14.09□□□□□ -0.15
DEP1YAL013W RMD8P43620 662 aa14.09□□□□□ -0.15
DEP1YAL013W PET130P47065 347 aa14.09□□□□□ -0.15
DEP1YAL013W CSN12P47130 423 aa14.09□□□□□ -0.15
DEP1YAL013W YMR155WQ03795 547 aa14.09□□□□□ -0.15
DEP1YAL013W CSN9Q03981 162 aa14.09□□□□□ -0.15
DEP1YAL013W NUS1Q12063 375 aa14.09□□□□□ -0.15
DEP1YAL013W PMA2P19657 947 aa14.08□□□□□ -0.16
DEP1YAL013W PHO3P24031 467 aa14.08□□□□□ -0.16
DEP1YAL013W HEM3P28789 327 aa14.08□□□□□ -0.16
DEP1YAL013W MUP3P38734 546 aa14.08□□□□□ -0.16
DEP1YAL013W GTS1P40956 396 aa14.08□□□□□ -0.16
DEP1YAL013W PYK2P52489 506 aaKnown RBP14.08□□□□□ -0.16
DEP1YAL013W LCB5Q06147 687 aaKnown RBP14.08□□□□□ -0.16
DEP1YAL013W RSB1Q08417 382 aa14.08□□□□□ -0.16
DEP1YAL013W LEU1P07264 779 aaKnown RBP14.07□□□□□ -0.16
DEP1YAL013W ABF1P14164 731 aa14.07□□□□□ -0.16
DEP1YAL013W FPR1P20081 114 aaKnown RBP14.07□□□□□ -0.16
DEP1YAL013W LRG1P35688 1017 aa14.07□□□□□ -0.16
DEP1YAL013W IRS4P36115 615 aaKnown RBP14.07□□□□□ -0.16
DEP1YAL013W YHB1P39676 399 aaKnown RBP14.07□□□□□ -0.16
DEP1YAL013W ALG8P40351 577 aa14.07□□□□□ -0.16
DEP1YAL013W YJR124CP47159 448 aa14.07□□□□□ -0.16
DEP1YAL013W MNT2P53059 558 aa14.07□□□□□ -0.16
DEP1YAL013W FMN1Q03778 218 aa14.07□□□□□ -0.16
DEP1YAL013W MRH1Q12117 320 aaPredicted RBP14.07□□□□□ -0.16
DEP1YAL013W STB3Q12427 513 aa14.07□□□□□ -0.16
DEP1YAL013W KEX2P13134 814 aa14.06□□□□□ -0.16
DEP1YAL013W EXO70P19658 623 aa14.06□□□□□ -0.16
DEP1YAL013W PRP4P20053 465 aaKnown RBP14.06□□□□□ -0.16
DEP1YAL013W ARG1P22768 420 aa14.06□□□□□ -0.16
DEP1YAL013W RPC19P28000 142 aaKnown RBP14.06□□□□□ -0.16
DEP1YAL013W MVD1P32377 396 aaKnown RBP14.06□□□□□ -0.16
DEP1YAL013W YKL097CP34245 136 aa14.06□□□□□ -0.16
DEP1YAL013W NEM1P38757 446 aa14.06□□□□□ -0.16
DEP1YAL013W YIR007WP40566 764 aa14.06□□□□□ -0.16
DEP1YAL013W GYP8P43570 497 aa14.06□□□□□ -0.16
DEP1YAL013W GLG2P47011 380 aa14.06□□□□□ -0.16
DEP1YAL013W TEL2P53038 688 aa14.06□□□□□ -0.16
DEP1YAL013W BOL2P53082 120 aa14.06□□□□□ -0.16
DEP1YAL013W YNL143CP53908 130 aa14.06□□□□□ -0.16
DEP1YAL013W YHM2Q04013 314 aa14.06□□□□□ -0.16
DEP1YAL013W HPT1Q04178 221 aaKnown RBP14.06□□□□□ -0.16
DEP1YAL013W ENT4Q07872 247 aa14.06□□□□□ -0.16
DEP1YAL013W HRK1Q08732 759 aaKnown RBP14.06□□□□□ -0.16
DEP1YAL013W RHO2P06781 192 aa14.05□□□□□ -0.16
DEP1YAL013W YJU3P28321 313 aa14.05□□□□□ -0.16
DEP1YAL013W MRPL9P31334 269 aa14.05□□□□□ -0.16
DEP1YAL013W MF(ALPHA)2P32435 120 aa14.05□□□□□ -0.16
DEP1YAL013W RFC3P38629 340 aa14.05□□□□□ -0.16
DEP1YAL013W YHR131CP38835 850 aa14.05□□□□□ -0.16
DEP1YAL013W RPH1P39956 796 aa14.05□□□□□ -0.16
DEP1YAL013W AXL1P40851 1208 aa14.05□□□□□ -0.16
DEP1YAL013W GCD14P46959 383 aaPredicted RBP14.05□□□□□ -0.16
DEP1YAL013W SET2P46995 733 aaKnown RBP14.05□□□□□ -0.16
DEP1YAL013W TMA22P47089 198 aaPredicted RBP14.05□□□□□ -0.16
DEP1YAL013W YNR065CP53751 1116 aa14.05□□□□□ -0.16
DEP1YAL013W YDR338CQ05497 695 aa14.05□□□□□ -0.16
DEP1YAL013W BLS1Q06071 122 aa14.05□□□□□ -0.16
DEP1YAL013W YPL225WQ08971 146 aaKnown RBP14.05□□□□□ -0.16
DEP1YAL013W DAP1Q12091 152 aa14.05□□□□□ -0.16
DEP1YAL013W MDY2Q12285 212 aa14.05□□□□□ -0.16
DEP1YAL013W YPL247CQ12523 523 aa14.05□□□□□ -0.16
DEP1YAL013W PMR1P13586 950 aa14.04□□□□□ -0.16
DEP1YAL013W HSC82P15108 705 aaKnown RBP14.04□□□□□ -0.16
DEP1YAL013W BET2P20133 325 aa14.04□□□□□ -0.16
DEP1YAL013W VAC17P25591 423 aa14.04□□□□□ -0.16
DEP1YAL013W RRN3P36070 627 aa14.04□□□□□ -0.16
DEP1YAL013W ERP5P38819 212 aa14.04□□□□□ -0.16
DEP1YAL013W MGS1P40151 587 aa14.04□□□□□ -0.16
DEP1YAL013W SPC105P53148 917 aa14.04□□□□□ -0.16
DEP1YAL013W SFB2P53953 876 aa14.04□□□□□ -0.16
DEP1YAL013W SPC24Q04477 213 aa14.04□□□□□ -0.16
DEP1YAL013W YOL019WQ08157 551 aa14.04□□□□□ -0.16
DEP1YAL013W UBX3Q12229 455 aa14.04□□□□□ -0.16
DEP1YAL013W YPR089WO13585 888 aa14.03□□□□□ -0.16
DEP1YAL013W COX6P00427 148 aa14.03□□□□□ -0.16
Retrieved 100 of 5,963 RNA–protein pairs in 203.2 ms