RNA–Protein interactions for RNA: ENST00000558253.5

SPG11-209, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 3

Gene SPG11, Length 879 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-209ENST00000558253 LRRC8AQ8IWT6 810 aa9.53□□□□□ -0.88
SPG11-209ENST00000558253 AOPEPQ8N6M6 819 aa9.53□□□□□ -0.88
SPG11-209ENST00000558253 ENAHQ8N8S7 591 aaPredicted RBP9.53□□□□□ -0.88
SPG11-209ENST00000558253 CNNM3Q8NE01 707 aa9.53□□□□□ -0.88
SPG11-209ENST00000558253 GRAPLQ8TC17 118 aaPredicted RBP9.53□□□□□ -0.88
SPG11-209ENST00000558253 ZNF830Q96NB3 372 aaPredicted RBP9.53□□□□□ -0.88
SPG11-209ENST00000558253 PHF20Q9BVI0 1012 aa9.53□□□□□ -0.88
SPG11-209ENST00000558253 ADAM33Q9BZ11 813 aa9.53□□□□□ -0.88
SPG11-209ENST00000558253 TCP11L1Q9NUJ3 509 aa9.53□□□□□ -0.88
SPG11-209ENST00000558253 DDX52Q9Y2R4 599 aaKnown RBP eCLIP9.53□□□□□ -0.88
SPG11-209ENST00000558253 MYH14Q7Z406 1995 aaKnown RBP9.52□□□□□ -0.89
SPG11-209ENST00000558253 BTBD18B2RXH4 712 aa9.52□□□□□ -0.89
SPG11-209ENST00000558253 GNPATO15228 680 aa9.52□□□□□ -0.89
SPG11-209ENST00000558253 ONECUT3O60422 494 aaPredicted RBP9.52□□□□□ -0.89
SPG11-209ENST00000558253 MARCKSP29966 332 aaPredicted RBP9.52□□□□□ -0.89
SPG11-209ENST00000558253 TM4SF1P30408 202 aa9.52□□□□□ -0.89
SPG11-209ENST00000558253 TROAPQ12815 778 aa9.52□□□□□ -0.89
SPG11-209ENST00000558253 TMTC3Q6ZXV5 915 aa9.52□□□□□ -0.89
SPG11-209ENST00000558253 ZNF804AQ7Z570 1209 aa9.52□□□□□ -0.89
SPG11-209ENST00000558253 DZIP1Q86YF9 867 aaKnown RBP9.52□□□□□ -0.89
SPG11-209ENST00000558253 RAB11FIP4Q86YS3 637 aa9.52□□□□□ -0.89
SPG11-209ENST00000558253 CCDC112Q8NEF3 446 aa9.52□□□□□ -0.89
SPG11-209ENST00000558253 NUP133Q8WUM0 1156 aa9.52□□□□□ -0.89
SPG11-209ENST00000558253 CELF1Q92879 486 aaKnown RBP9.52□□□□□ -0.89
SPG11-209ENST00000558253 GTPBP4Q9BZE4 634 aaKnown RBP9.52□□□□□ -0.89
SPG11-209ENST00000558253 SENP2Q9HC62 589 aa9.52□□□□□ -0.89
SPG11-209ENST00000558253 DCP1AQ9NPI6 582 aaPredicted RBP9.52□□□□□ -0.89
SPG11-209ENST00000558253 DUOX1Q9NRD9 1551 aa9.52□□□□□ -0.89
SPG11-209ENST00000558253 AATFQ9NY61 560 aaKnown RBP eCLIP9.52□□□□□ -0.89
SPG11-209ENST00000558253 FBXO2Q9UK22 296 aaPredicted RBP9.52□□□□□ -0.89
SPG11-209ENST00000558253 USP21Q9UK80 565 aa9.52□□□□□ -0.89
SPG11-209ENST00000558253 COL24A1Q17RW2 1714 aa9.51□□□□□ -0.89
SPG11-209ENST00000558253 USP17L12C9JPN9 530 aa9.51□□□□□ -0.89
SPG11-209ENST00000558253 USP17L21D6R901 530 aa9.51□□□□□ -0.89
SPG11-209ENST00000558253 SNAP23O00161 211 aa9.51□□□□□ -0.89
SPG11-209ENST00000558253 BBOX1O75936 387 aa9.51□□□□□ -0.89
SPG11-209ENST00000558253 LDHBP07195 334 aaKnown RBP9.51□□□□□ -0.89
SPG11-209ENST00000558253 RXRAP19793 462 aa9.51□□□□□ -0.89
SPG11-209ENST00000558253 ATP2B4P23634 1241 aa9.51□□□□□ -0.89
SPG11-209ENST00000558253 SMARCA1P28370 1054 aa9.51□□□□□ -0.89
SPG11-209ENST00000558253 ERCC5P28715 1186 aaPredicted RBP9.51□□□□□ -0.89
SPG11-209ENST00000558253 FUT2Q10981 343 aa9.51□□□□□ -0.89
SPG11-209ENST00000558253 DPCR1Q3MIW9 517 aa9.51□□□□□ -0.89
SPG11-209ENST00000558253 ADGRA1Q86SQ6 560 aa9.51□□□□□ -0.89
SPG11-209ENST00000558253 CCDC144CPQ8IYA2 1237 aa9.51□□□□□ -0.89
SPG11-209ENST00000558253 CERKQ8TCT0 537 aa9.51□□□□□ -0.89
SPG11-209ENST00000558253 SDR42E1Q8WUS8 393 aa9.51□□□□□ -0.89
SPG11-209ENST00000558253 C8orf37Q96NL8 207 aa9.51□□□□□ -0.89
SPG11-209ENST00000558253 AIFM3Q96NN9 605 aa9.51□□□□□ -0.89
SPG11-209ENST00000558253 MYL10Q9BUA6 226 aa9.51□□□□□ -0.89
SPG11-209ENST00000558253 INCENPQ9NQS7 918 aa9.51□□□□□ -0.89
SPG11-209ENST00000558253 PODXL2Q9NZ53 605 aa9.51□□□□□ -0.89
SPG11-209ENST00000558253 PYCARDQ9ULZ3 195 aa9.51□□□□□ -0.89
SPG11-209ENST00000558253 IQSEC3Q9UPP2 1182 aaPredicted RBP9.51□□□□□ -0.89
SPG11-209ENST00000558253 TACC3Q9Y6A5 838 aa9.51□□□□□ -0.89
SPG11-209ENST00000558253 XDHP47989 1333 aa9.51□□□□□ -0.89
SPG11-209ENST00000558253 ROBO3Q96MS0 1386 aa9.5□□□□□ -0.89
SPG11-209ENST00000558253 GRXCR2A6NFK2 248 aa9.5□□□□□ -0.89
SPG11-209ENST00000558253 NPHP1O15259 732 aa9.5□□□□□ -0.89
SPG11-209ENST00000558253 SKILP12757 684 aa9.5□□□□□ -0.89
SPG11-209ENST00000558253 OSBPP22059 807 aa9.5□□□□□ -0.89
SPG11-209ENST00000558253 SARSP49591 514 aaKnown RBP9.5□□□□□ -0.89
SPG11-209ENST00000558253 TOB1P50616 345 aaPredicted RBP9.5□□□□□ -0.89
SPG11-209ENST00000558253 PIP4K2BP78356 416 aa9.5□□□□□ -0.89
SPG11-209ENST00000558253 MDM2Q00987 491 aaPredicted RBP9.5□□□□□ -0.89
SPG11-209ENST00000558253 POSTNQ15063 836 aa9.5□□□□□ -0.89
SPG11-209ENST00000558253 SLC27A3Q5K4L6 730 aa9.5□□□□□ -0.89
SPG11-209ENST00000558253 ARL6IP4Q66PJ3 421 aaKnown RBP9.5□□□□□ -0.89
SPG11-209ENST00000558253 BICDL1Q6ZP65 573 aa9.5□□□□□ -0.89
SPG11-209ENST00000558253 FCHSD1Q86WN1 690 aa9.5□□□□□ -0.89
SPG11-209ENST00000558253 STK11IPQ8N1F8 1099 aa9.5□□□□□ -0.89
SPG11-209ENST00000558253 CNBD1Q8NA66 436 aa9.5□□□□□ -0.89
SPG11-209ENST00000558253 ENOX1Q8TC92 643 aaKnown RBP9.5□□□□□ -0.89
SPG11-209ENST00000558253 TBC1D22AQ8WUA7 517 aa9.5□□□□□ -0.89
SPG11-209ENST00000558253 CACTINQ8WUQ7 758 aaKnown RBP9.5□□□□□ -0.89
SPG11-209ENST00000558253 SMARCE1Q969G3 411 aa9.5□□□□□ -0.89
SPG11-209ENST00000558253 RBM17Q96I25 401 aaKnown RBP9.5□□□□□ -0.89
SPG11-209ENST00000558253 GJB4Q9NTQ9 266 aa9.5□□□□□ -0.89
SPG11-209ENST00000558253 SUGT1Q9Y2Z0 365 aa9.5□□□□□ -0.89
SPG11-209ENST00000558253 NHSQ6T4R5 1651 aa9.5□□□□□ -0.89
SPG11-209ENST00000558253 IRS2Q9Y4H2 1338 aa9.5□□□□□ -0.89
SPG11-209ENST00000558253 THSD7AQ9UPZ6 1657 aa9.49□□□□□ -0.89
SPG11-209ENST00000558253 COL1A1P02452 1464 aaPredicted RBP9.49□□□□□ -0.89
SPG11-209ENST00000558253 TSPY2A6NKD2 308 aa9.49□□□□□ -0.89
SPG11-209ENST00000558253 UBAP1LF5GYI3 381 aa9.49□□□□□ -0.89
SPG11-209ENST00000558253 LAD1O00515 517 aa9.49□□□□□ -0.89
SPG11-209ENST00000558253 PPFIA3O75145 1194 aa9.49□□□□□ -0.89
SPG11-209ENST00000558253 SLFN14P0C7P3 912 aa9.49□□□□□ -0.89
SPG11-209ENST00000558253 SCG2P13521 617 aa9.49□□□□□ -0.89
SPG11-209ENST00000558253 SFPQP23246 707 aaKnown RBP eCLIP9.49□□□□□ -0.89
SPG11-209ENST00000558253 HOXA7P31268 230 aaPredicted RBP9.49□□□□□ -0.89
SPG11-209ENST00000558253 GUCY1A2P33402 732 aa9.49□□□□□ -0.89
SPG11-209ENST00000558253 ST5P78524 1137 aa9.49□□□□□ -0.89
SPG11-209ENST00000558253 LSM11P83369 360 aaKnown RBP eCLIP9.49□□□□□ -0.89
SPG11-209ENST00000558253 FANCCQ00597 558 aa9.49□□□□□ -0.89
SPG11-209ENST00000558253 NCAPHQ15003 741 aa9.49□□□□□ -0.89
SPG11-209ENST00000558253 PKN1Q16512 942 aa9.49□□□□□ -0.89
SPG11-209ENST00000558253 PFKFB3Q16875 520 aaPredicted RBP9.49□□□□□ -0.89
SPG11-209ENST00000558253 TPD52L1Q16890 204 aaPredicted RBP9.49□□□□□ -0.89
SPG11-209ENST00000558253 LONRF3Q496Y0 759 aa9.49□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms