RNA–Protein interactions for RNA: ENST00000441089.1

PTPN4-206, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 671 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-206ENST00000441089 KIAA2012Q0VF49 1180 aa6.24□□□□□ -1.41
PTPN4-206ENST00000441089 TCIRG1Q13488 830 aa6.24□□□□□ -1.41
PTPN4-206ENST00000441089 ZNF496Q96IT1 587 aaPredicted RBP6.24□□□□□ -1.41
PTPN4-206ENST00000441089 R3HDMLQ9H3Y0 253 aa6.24□□□□□ -1.41
PTPN4-206ENST00000441089 MTMR10Q9NXD2 777 aa6.24□□□□□ -1.41
PTPN4-206ENST00000441089 GGA3Q9NZ52 723 aa6.24□□□□□ -1.41
PTPN4-206ENST00000441089 NUP98P52948 1817 aa6.24□□□□□ -1.41
PTPN4-206ENST00000441089 DDX60Q8IY21 1712 aaKnown RBP6.24□□□□□ -1.41
PTPN4-206ENST00000441089 MYO9BQ13459 2157 aa6.23□□□□□ -1.41
PTPN4-206ENST00000441089 SHTN1A0MZ66 631 aa6.23□□□□□ -1.41
PTPN4-206ENST00000441089 MANSC4A6NHS7 340 aaPredicted RBP6.23□□□□□ -1.41
PTPN4-206ENST00000441089 FAM177BA6PVY3 158 aa6.23□□□□□ -1.41
PTPN4-206ENST00000441089 ZBTB7BO15156 539 aaPredicted RBP6.23□□□□□ -1.41
PTPN4-206ENST00000441089 IL13P35225 146 aa6.23□□□□□ -1.41
PTPN4-206ENST00000441089 NF2P35240 595 aa6.23□□□□□ -1.41
PTPN4-206ENST00000441089 EPHA4P54764 986 aa6.23□□□□□ -1.41
PTPN4-206ENST00000441089 SPEM2Q0P670 501 aa6.23□□□□□ -1.41
PTPN4-206ENST00000441089 DPP8Q6V1X1 898 aaPredicted RBP6.23□□□□□ -1.41
PTPN4-206ENST00000441089 TXNRD3Q86VQ6 643 aa6.23□□□□□ -1.41
PTPN4-206ENST00000441089 CD99L2Q8TCZ2 262 aa6.23□□□□□ -1.41
PTPN4-206ENST00000441089 TP53INP1Q96A56 240 aa6.23□□□□□ -1.41
PTPN4-206ENST00000441089 NACC1Q96RE7 527 aa6.23□□□□□ -1.41
PTPN4-206ENST00000441089 LGR6Q9HBX8 967 aa6.23□□□□□ -1.41
PTPN4-206ENST00000441089 SCHIP1Q9P0W5 487 aaPredicted RBP6.23□□□□□ -1.41
PTPN4-206ENST00000441089 ATP6V0A2Q9Y487 856 aa6.23□□□□□ -1.41
PTPN4-206ENST00000441089 UBE2Q2LH0YL09 131 aa6.22□□□□□ -1.41
PTPN4-206ENST00000441089 TCERG1O14776 1098 aaKnown RBP6.22□□□□□ -1.41
PTPN4-206ENST00000441089 RAD21O60216 631 aa6.22□□□□□ -1.41
PTPN4-206ENST00000441089 A1BGP04217 495 aa6.22□□□□□ -1.41
PTPN4-206ENST00000441089 SP3Q02447 781 aa6.22□□□□□ -1.41
PTPN4-206ENST00000441089 KIF4BQ2VIQ3 1234 aa6.22□□□□□ -1.41
PTPN4-206ENST00000441089 OTUD7BQ6GQQ9 843 aa6.22□□□□□ -1.41
PTPN4-206ENST00000441089 HSH2DQ96JZ2 352 aa6.22□□□□□ -1.41
PTPN4-206ENST00000441089 CFAP53Q96M91 514 aa6.22□□□□□ -1.41
PTPN4-206ENST00000441089 RPTORQ8N122 1335 aa6.22□□□□□ -1.41
PTPN4-206ENST00000441089 WTIPA6NIX2 430 aaPredicted RBP6.21□□□□□ -1.42
PTPN4-206ENST00000441089 PSMD14O00487 310 aa6.21□□□□□ -1.42
PTPN4-206ENST00000441089 DIAPH1O60610 1272 aaKnown RBP6.21□□□□□ -1.42
PTPN4-206ENST00000441089 EGFRP00533 1210 aa6.21□□□□□ -1.42
PTPN4-206ENST00000441089 BMP8BP34820 402 aa6.21□□□□□ -1.42
PTPN4-206ENST00000441089 WDR43Q15061 677 aaKnown RBP eCLIP6.21□□□□□ -1.42
PTPN4-206ENST00000441089 TMEM132AQ24JP5 1023 aa6.21□□□□□ -1.42
PTPN4-206ENST00000441089 LRIT3Q3SXY7 679 aa6.21□□□□□ -1.42
PTPN4-206ENST00000441089 SULT6B1Q6IMI4 303 aa6.21□□□□□ -1.42
PTPN4-206ENST00000441089 ZNF790Q6PG37 636 aa6.21□□□□□ -1.42
PTPN4-206ENST00000441089 Q7L0L9 218 aa6.21□□□□□ -1.42
PTPN4-206ENST00000441089 AEBP1Q8IUX7 1158 aa6.21□□□□□ -1.42
PTPN4-206ENST00000441089 CCDC146Q8IYE0 955 aa6.21□□□□□ -1.42
PTPN4-206ENST00000441089 SERBP1Q8NC51 408 aaKnown RBP eCLIP6.21□□□□□ -1.42
PTPN4-206ENST00000441089 POM121Q96HA1 1249 aa6.21□□□□□ -1.42
PTPN4-206ENST00000441089 FMNL2Q96PY5 1086 aa6.21□□□□□ -1.42
PTPN4-206ENST00000441089 ALG2Q9H553 416 aa6.21□□□□□ -1.42
PTPN4-206ENST00000441089 ZNF358Q9NW07 568 aa6.21□□□□□ -1.42
PTPN4-206ENST00000441089 NAGPAQ9UK23 515 aa6.21□□□□□ -1.42
PTPN4-206ENST00000441089 SIPA1L3O60292 1781 aaPredicted RBP6.21□□□□□ -1.42
PTPN4-206ENST00000441089 ABCC12Q96J65 1359 aa6.2□□□□□ -1.42
PTPN4-206ENST00000441089 IBTKQ9P2D0 1353 aaPredicted RBP6.2□□□□□ -1.42
PTPN4-206ENST00000441089 ZDBF2Q9HCK1 2354 aa6.2□□□□□ -1.42
PTPN4-206ENST00000441089 YDJCA8MPS7 323 aa6.2□□□□□ -1.42
PTPN4-206ENST00000441089 C9orf172C9J069 976 aa6.2□□□□□ -1.42
PTPN4-206ENST00000441089 U2SURPO15042 1029 aaKnown RBP6.2□□□□□ -1.42
PTPN4-206ENST00000441089 U2AF1L5P0DN76 240 aaPredicted RBP6.2□□□□□ -1.42
PTPN4-206ENST00000441089 ZBTB48P10074 688 aaPredicted RBP6.2□□□□□ -1.42
PTPN4-206ENST00000441089 ELNP15502 786 aa6.2□□□□□ -1.42
PTPN4-206ENST00000441089 NOS2P35228 1153 aa6.2□□□□□ -1.42
PTPN4-206ENST00000441089 HNRNPUQ00839 825 aaKnown RBP eCLIP6.2□□□□□ -1.42
PTPN4-206ENST00000441089 U2AF1Q01081 240 aaKnown RBP eCLIP6.2□□□□□ -1.42
PTPN4-206ENST00000441089 TEFQ10587 303 aa6.2□□□□□ -1.42
PTPN4-206ENST00000441089 ANGEL2Q5VTE6 544 aaKnown RBP6.2□□□□□ -1.42
PTPN4-206ENST00000441089 MCTP1Q6DN14 999 aa6.2□□□□□ -1.42
PTPN4-206ENST00000441089 MOB2Q70IA6 237 aa6.2□□□□□ -1.42
PTPN4-206ENST00000441089 ARMC9Q7Z3E5 817 aa6.2□□□□□ -1.42
PTPN4-206ENST00000441089 SP8Q8IXZ3 490 aa6.2□□□□□ -1.42
PTPN4-206ENST00000441089 LENG1Q96BZ8 264 aaPredicted RBP6.2□□□□□ -1.42
PTPN4-206ENST00000441089 PLEKHF1Q96S99 279 aa6.2□□□□□ -1.42
PTPN4-206ENST00000441089 PTCH2Q9Y6C5 1203 aa6.2□□□□□ -1.42
PTPN4-206ENST00000441089 ANKRD36CQ5JPF3 1778 aa6.2□□□□□ -1.42
PTPN4-206ENST00000441089 PSME4Q14997 1843 aa6.2□□□□□ -1.42
PTPN4-206ENST00000441089 SCN9AQ15858 1988 aa6.19□□□□□ -1.42
PTPN4-206ENST00000441089 LZTS3O60299 673 aaPredicted RBP6.19□□□□□ -1.42
PTPN4-206ENST00000441089 BBOX1O75936 387 aa6.19□□□□□ -1.42
PTPN4-206ENST00000441089 HMOX1P09601 288 aa6.19□□□□□ -1.42
PTPN4-206ENST00000441089 CAPN2P17655 700 aa6.19□□□□□ -1.42
PTPN4-206ENST00000441089 TEAD4Q15561 434 aa6.19□□□□□ -1.42
PTPN4-206ENST00000441089 ZNF280CQ8ND82 737 aa6.19□□□□□ -1.42
PTPN4-206ENST00000441089 NUDT8Q8WV74 236 aa6.19□□□□□ -1.42
PTPN4-206ENST00000441089 SNX27Q96L92 541 aa6.19□□□□□ -1.42
PTPN4-206ENST00000441089 STAP2Q9UGK3 403 aa6.19□□□□□ -1.42
PTPN4-206ENST00000441089 NUDCQ9Y266 331 aa6.19□□□□□ -1.42
PTPN4-206ENST00000441089 SYNGAP1Q96PV0 1343 aa6.19□□□□□ -1.42
PTPN4-206ENST00000441089 ALPK3Q96L96 1907 aa6.19□□□□□ -1.42
PTPN4-206ENST00000441089 CACNA1GO43497 2377 aa6.18□□□□□ -1.42
PTPN4-206ENST00000441089 DNAH12Q6ZR08 3092 aa6.18□□□□□ -1.42
PTPN4-206ENST00000441089 APAF1O14727 1248 aa6.18□□□□□ -1.42
PTPN4-206ENST00000441089 PRMT2P55345 433 aa6.18□□□□□ -1.42
PTPN4-206ENST00000441089 CRHR2Q13324 411 aa6.18□□□□□ -1.42
PTPN4-206ENST00000441089 EML3Q32P44 896 aa6.18□□□□□ -1.42
PTPN4-206ENST00000441089 FAM109BQ6ICB4 259 aaPredicted RBP6.18□□□□□ -1.42
PTPN4-206ENST00000441089 TMC4Q7Z404 712 aa6.18□□□□□ -1.42
PTPN4-206ENST00000441089 UBE2Q1Q7Z7E8 422 aa6.18□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 77.9 ms