RNA–Protein interactions for RNA: ENST00000299633.6

HDGFL3-201, Transcript of HDGF like 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HDGFL3, Length 12,733 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDGFL3-201ENST00000299633 IRX1P78414 480 aaPredicted RBP12.28□□□□□ -0.44
HDGFL3-201ENST00000299633 TRAF7Q6Q0C0 670 aa12.28□□□□□ -0.44
HDGFL3-201ENST00000299633 ZMYM4Q5VZL5 1548 aa12.28□□□□□ -0.44
HDGFL3-201ENST00000299633 NONOQ15233 471 aaKnown RBP eCLIP12.28□□□□□ -0.44
HDGFL3-201ENST00000299633 POMGNT1Q8WZA1 660 aa12.28□□□□□ -0.44
HDGFL3-201ENST00000299633 STMN3Q9NZ72 180 aa12.28□□□□□ -0.44
HDGFL3-201ENST00000299633 SNX21Q969T3 373 aa12.28□□□□□ -0.44
HDGFL3-201ENST00000299633 GTF3C5Q9Y5Q8 519 aaPredicted RBP12.28□□□□□ -0.44
HDGFL3-201ENST00000299633 STX10O60499 249 aa12.28□□□□□ -0.44
HDGFL3-201ENST00000299633 MARCKSP29966 332 aaPredicted RBP12.27□□□□□ -0.44
HDGFL3-201ENST00000299633 TMEM259Q4ZIN3 620 aa12.27□□□□□ -0.44
HDGFL3-201ENST00000299633 FAM180AQ6UWF9 173 aa12.27□□□□□ -0.44
HDGFL3-201ENST00000299633 SMC5Q8IY18 1101 aa12.27□□□□□ -0.44
HDGFL3-201ENST00000299633 TTLL11Q8NHH1 800 aa12.27□□□□□ -0.44
HDGFL3-201ENST00000299633 HMG20BQ9P0W2 317 aa12.27□□□□□ -0.44
HDGFL3-201ENST00000299633 ARHGAP30Q7Z6I6 1101 aaPredicted RBP12.27□□□□□ -0.44
HDGFL3-201ENST00000299633 DYDC2Q96IM9 177 aa12.27□□□□□ -0.44
HDGFL3-201ENST00000299633 KIAA0586Q9BVV6 1533 aa12.27□□□□□ -0.44
HDGFL3-201ENST00000299633 HARSP12081 509 aaKnown RBP12.27□□□□□ -0.44
HDGFL3-201ENST00000299633 ART3Q13508 389 aa12.27□□□□□ -0.44
HDGFL3-201ENST00000299633 TCEANC2Q96MN5 208 aa12.27□□□□□ -0.44
HDGFL3-201ENST00000299633 PCDHB15Q9Y5E8 787 aa12.27□□□□□ -0.44
HDGFL3-201ENST00000299633 SYCP2Q9BX26 1530 aa12.27□□□□□ -0.44
HDGFL3-201ENST00000299633 ZBTB22O15209 634 aa12.27□□□□□ -0.45
HDGFL3-201ENST00000299633 HDAC4P56524 1084 aa12.27□□□□□ -0.45
HDGFL3-201ENST00000299633 GSDMAQ96QA5 445 aa12.27□□□□□ -0.45
HDGFL3-201ENST00000299633 TRMT10CQ7L0Y3 403 aaKnown RBP12.27□□□□□ -0.45
HDGFL3-201ENST00000299633 PROCA1Q8NCQ7 364 aaPredicted RBP12.27□□□□□ -0.45
HDGFL3-201ENST00000299633 SLC8A3P57103 927 aa12.27□□□□□ -0.45
HDGFL3-201ENST00000299633 ATP2B3Q16720 1220 aa12.27□□□□□ -0.45
HDGFL3-201ENST00000299633 ASZ1Q8WWH4 475 aa12.27□□□□□ -0.45
HDGFL3-201ENST00000299633 IFT122Q9HBG6 1241 aa12.27□□□□□ -0.45
HDGFL3-201ENST00000299633 RNASELQ05823 741 aaKnown RBP12.27□□□□□ -0.45
HDGFL3-201ENST00000299633 BRD3Q15059 726 aa12.27□□□□□ -0.45
HDGFL3-201ENST00000299633 TTF2Q9UNY4 1162 aaKnown RBP12.27□□□□□ -0.45
HDGFL3-201ENST00000299633 F13A1P00488 732 aa12.27□□□□□ -0.45
HDGFL3-201ENST00000299633 NEUROG2Q9H2A3 272 aa12.27□□□□□ -0.45
HDGFL3-201ENST00000299633 MYO7AQ13402 2215 aa12.27□□□□□ -0.45
HDGFL3-201ENST00000299633 METAP2P50579 478 aaKnown RBP eCLIP12.27□□□□□ -0.45
HDGFL3-201ENST00000299633 SCYL3Q8IZE3 742 aa12.27□□□□□ -0.45
HDGFL3-201ENST00000299633 INTUQ9ULD6 942 aa12.27□□□□□ -0.45
HDGFL3-201ENST00000299633 GSTA4O15217 222 aa12.27□□□□□ -0.45
HDGFL3-201ENST00000299633 AHI1Q8N157 1196 aa12.27□□□□□ -0.45
HDGFL3-201ENST00000299633 TRIM31Q9BZY9 425 aa12.27□□□□□ -0.45
HDGFL3-201ENST00000299633 USP16Q9Y5T5 823 aa12.27□□□□□ -0.45
HDGFL3-201ENST00000299633 SLC4A7Q9Y6M7 1214 aa12.27□□□□□ -0.45
HDGFL3-201ENST00000299633 STARD3NLO95772 234 aa12.26□□□□□ -0.45
HDGFL3-201ENST00000299633 CTNNA1P35221 906 aaKnown RBP12.26□□□□□ -0.45
HDGFL3-201ENST00000299633 ZNF75DP51815 510 aa12.26□□□□□ -0.45
HDGFL3-201ENST00000299633 PPP1R42Q7Z4L9 355 aa12.26□□□□□ -0.45
HDGFL3-201ENST00000299633 SLC26A6Q9BXS9 759 aa12.26□□□□□ -0.45
HDGFL3-201ENST00000299633 RNF207Q6ZRF8 634 aa12.26□□□□□ -0.45
HDGFL3-201ENST00000299633 CCDC61Q9Y6R9 512 aa12.26□□□□□ -0.45
HDGFL3-201ENST00000299633 PIK3R4Q99570 1358 aa12.26□□□□□ -0.45
HDGFL3-201ENST00000299633 GOLGA8FQ08AF8 430 aa12.26□□□□□ -0.45
HDGFL3-201ENST00000299633 GOLGA8DPQ0D2H9 430 aa12.26□□□□□ -0.45
HDGFL3-201ENST00000299633 IGSF22Q8N9C0 903 aa12.26□□□□□ -0.45
HDGFL3-201ENST00000299633 ARMC2Q8NEN0 867 aa12.26□□□□□ -0.45
HDGFL3-201ENST00000299633 FAM8A1Q9UBU6 413 aa12.26□□□□□ -0.45
HDGFL3-201ENST00000299633 NVLO15381 856 aaKnown RBP12.26□□□□□ -0.45
HDGFL3-201ENST00000299633 SLF2Q8IX21 1173 aa12.26□□□□□ -0.45
HDGFL3-201ENST00000299633 RASGRF2O14827 1237 aa12.26□□□□□ -0.45
HDGFL3-201ENST00000299633 TMEM67Q5HYA8 995 aa12.26□□□□□ -0.45
HDGFL3-201ENST00000299633 HS2ST1Q7LGA3 356 aa12.26□□□□□ -0.45
HDGFL3-201ENST00000299633 TRIM15Q9C019 465 aa12.26□□□□□ -0.45
HDGFL3-201ENST00000299633 EXOC5O00471 708 aa12.26□□□□□ -0.45
HDGFL3-201ENST00000299633 DKC1O60832 514 aaKnown RBP eCLIP12.26□□□□□ -0.45
HDGFL3-201ENST00000299633 SLC5A1P13866 664 aa12.26□□□□□ -0.45
HDGFL3-201ENST00000299633 ATP1A2P50993 1020 aa12.26□□□□□ -0.45
HDGFL3-201ENST00000299633 MAP3K12Q12852 859 aa12.26□□□□□ -0.45
HDGFL3-201ENST00000299633 TEX12Q9BXU0 123 aa12.26□□□□□ -0.45
HDGFL3-201ENST00000299633 HDAC1Q13547 482 aaPredicted RBP12.26□□□□□ -0.45
HDGFL3-201ENST00000299633 DACH2Q96NX9 599 aa12.26□□□□□ -0.45
HDGFL3-201ENST00000299633 DOCK9Q9BZ29 2069 aa12.26□□□□□ -0.45
HDGFL3-201ENST00000299633 EFCAB14O75071 495 aa12.26□□□□□ -0.45
HDGFL3-201ENST00000299633 MYSM1Q5VVJ2 828 aa12.26□□□□□ -0.45
HDGFL3-201ENST00000299633 NR1H4Q96RI1 486 aaPredicted RBP12.26□□□□□ -0.45
HDGFL3-201ENST00000299633 SH3GL1Q99961 368 aa12.26□□□□□ -0.45
HDGFL3-201ENST00000299633 SFMBT1Q9UHJ3 866 aa12.26□□□□□ -0.45
HDGFL3-201ENST00000299633 LIN9Q5TKA1 542 aa12.26□□□□□ -0.45
HDGFL3-201ENST00000299633 C6orf203Q9P0P8 240 aaPredicted RBP12.26□□□□□ -0.45
HDGFL3-201ENST00000299633 DAPK3O43293 454 aa12.26□□□□□ -0.45
HDGFL3-201ENST00000299633 FLOT1O75955 427 aa12.26□□□□□ -0.45
HDGFL3-201ENST00000299633 RNF169Q8NCN4 708 aa12.26□□□□□ -0.45
HDGFL3-201ENST00000299633 ZKSCAN3Q9BRR0 538 aa12.26□□□□□ -0.45
HDGFL3-201ENST00000299633 ECHDC1Q9NTX5 307 aa12.26□□□□□ -0.45
HDGFL3-201ENST00000299633 LMNB1P20700 586 aa12.25□□□□□ -0.45
HDGFL3-201ENST00000299633 AMOTL2Q9Y2J4 779 aa12.25□□□□□ -0.45
HDGFL3-201ENST00000299633 ARHGAP10A1A4S6 786 aa12.25□□□□□ -0.45
HDGFL3-201ENST00000299633 CAVIN4Q5BKX8 364 aa12.25□□□□□ -0.45
HDGFL3-201ENST00000299633 KRT9P35527 623 aa12.25□□□□□ -0.45
HDGFL3-201ENST00000299633 CCT5P48643 541 aa12.25□□□□□ -0.45
HDGFL3-201ENST00000299633 MCTP2Q6DN12 878 aa12.25□□□□□ -0.45
HDGFL3-201ENST00000299633 WDR75Q8IWA0 830 aaKnown RBP12.25□□□□□ -0.45
HDGFL3-201ENST00000299633 GRIN1Q05586 938 aa12.25□□□□□ -0.45
HDGFL3-201ENST00000299633 TRIM42Q8IWZ5 723 aa12.25□□□□□ -0.45
HDGFL3-201ENST00000299633 MRPS27Q92552 414 aaKnown RBP12.25□□□□□ -0.45
HDGFL3-201ENST00000299633 UTP6Q9NYH9 597 aaKnown RBP12.25□□□□□ -0.45
HDGFL3-201ENST00000299633 NUTM2BA6NNL0 878 aaPredicted RBP12.25□□□□□ -0.45
HDGFL3-201ENST00000299633 NUTM2EB1AL46 878 aaPredicted RBP12.25□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 67.3 ms