RNA–Protein interactions for RNA: ENST00000621181.4

CLK1-215, Transcript of CDC like kinase 1, humanhuman

TSL 1 (best) BASIC

Gene CLK1, Length 1,843 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-215ENST00000621181 JAG1P78504 1218 aa9.57□□□□□ -0.88
CLK1-215ENST00000621181 ZYXQ15942 572 aaKnown RBP9.57□□□□□ -0.88
CLK1-215ENST00000621181 LRRC26Q2I0M4 334 aa9.57□□□□□ -0.88
CLK1-215ENST00000621181 Q3C1V9 767 aa9.57□□□□□ -0.88
CLK1-215ENST00000621181 CCDC158Q5M9N0 1113 aa9.57□□□□□ -0.88
CLK1-215ENST00000621181 PLEKHH3Q7Z736 793 aa9.57□□□□□ -0.88
CLK1-215ENST00000621181 GINM1Q9NU53 330 aa9.57□□□□□ -0.88
CLK1-215ENST00000621181 SAP30BPQ9UHR5 308 aaKnown RBP9.57□□□□□ -0.88
CLK1-215ENST00000621181 PNMA6EA0A0J9YXQ4 647 aa9.56□□□□□ -0.88
CLK1-215ENST00000621181 GLRX3O76003 335 aaKnown RBP9.56□□□□□ -0.88
CLK1-215ENST00000621181 COL6A1P12109 1028 aa9.56□□□□□ -0.88
CLK1-215ENST00000621181 CCNA1P78396 465 aa9.56□□□□□ -0.88
CLK1-215ENST00000621181 OS9Q13438 667 aaPredicted RBP9.56□□□□□ -0.88
CLK1-215ENST00000621181 MORN1Q5T089 497 aa9.56□□□□□ -0.88
CLK1-215ENST00000621181 LHX8Q68G74 356 aa9.56□□□□□ -0.88
CLK1-215ENST00000621181 USP17L2Q6R6M4 530 aa9.56□□□□□ -0.88
CLK1-215ENST00000621181 ADGRA1Q86SQ6 560 aa9.56□□□□□ -0.88
CLK1-215ENST00000621181 METTL16Q86W50 562 aaKnown RBP9.56□□□□□ -0.88
CLK1-215ENST00000621181 LBHD1Q9BQE6 289 aaPredicted RBP9.56□□□□□ -0.88
CLK1-215ENST00000621181 ANP32EQ9BTT0 268 aa9.56□□□□□ -0.88
CLK1-215ENST00000621181 SENP6Q9GZR1 1112 aaPredicted RBP9.56□□□□□ -0.88
CLK1-215ENST00000621181 IPO8O15397 1037 aaKnown RBP9.56□□□□□ -0.88
CLK1-215ENST00000621181 GH2P01242 217 aa9.56□□□□□ -0.88
CLK1-215ENST00000621181 PPP4CP60510 307 aa9.56□□□□□ -0.88
CLK1-215ENST00000621181 MFSD14CQ5VZR4 134 aa9.56□□□□□ -0.88
CLK1-215ENST00000621181 USP6NLQ92738 828 aa9.56□□□□□ -0.88
CLK1-215ENST00000621181 FRAT1Q92837 279 aaPredicted RBP9.56□□□□□ -0.88
CLK1-215ENST00000621181 EMILIN3Q9NT22 766 aa9.56□□□□□ -0.88
CLK1-215ENST00000621181 NDUFB9Q9Y6M9 179 aa9.56□□□□□ -0.88
CLK1-215ENST00000621181 IVNS1ABPQ9Y6Y0 642 aa9.56□□□□□ -0.88
CLK1-215ENST00000621181 MAST2Q6P0Q8 1798 aa9.55□□□□□ -0.88
CLK1-215ENST00000621181 CDK5RAP2Q96SN8 1893 aa9.55□□□□□ -0.88
CLK1-215ENST00000621181 FOCADQ5VW36 1801 aa9.55□□□□□ -0.88
CLK1-215ENST00000621181 CYP2E1P05181 493 aaPredicted RBP9.55□□□□□ -0.88
CLK1-215ENST00000621181 TRIM27P14373 513 aa9.55□□□□□ -0.88
CLK1-215ENST00000621181 CNGA1P29973 690 aa9.55□□□□□ -0.88
CLK1-215ENST00000621181 MAP2K5Q13163 448 aa9.55□□□□□ -0.88
CLK1-215ENST00000621181 RAB3GAP1Q15042 981 aa9.55□□□□□ -0.88
CLK1-215ENST00000621181 TNNI3KQ59H18 835 aa9.55□□□□□ -0.88
CLK1-215ENST00000621181 CLUAP1Q96AJ1 413 aa9.55□□□□□ -0.88
CLK1-215ENST00000621181 EDC3Q96F86 508 aaKnown RBP9.55□□□□□ -0.88
CLK1-215ENST00000621181 DBNDD2Q9BQY9 259 aa9.55□□□□□ -0.88
CLK1-215ENST00000621181 PRKAG2Q9UGJ0 569 aa9.55□□□□□ -0.88
CLK1-215ENST00000621181 RABGAP1Q9Y3P9 1069 aa9.55□□□□□ -0.88
CLK1-215ENST00000621181 FPGT-TNNI3KV9GXZ4 949 aa9.55□□□□□ -0.88
CLK1-215ENST00000621181 USP17L15C9J2P7 530 aa9.54□□□□□ -0.88
CLK1-215ENST00000621181 USP17L13C9JLJ4 530 aa9.54□□□□□ -0.88
CLK1-215ENST00000621181 USP17L11C9JVI0 530 aa9.54□□□□□ -0.88
CLK1-215ENST00000621181 USP17L18D6R9N7 530 aa9.54□□□□□ -0.88
CLK1-215ENST00000621181 USP17L22D6RA61 530 aa9.54□□□□□ -0.88
CLK1-215ENST00000621181 USP17L17D6RBQ6 530 aa9.54□□□□□ -0.88
CLK1-215ENST00000621181 USP17L19D6RCP7 530 aa9.54□□□□□ -0.88
CLK1-215ENST00000621181 USP17L20D6RJB6 530 aa9.54□□□□□ -0.88
CLK1-215ENST00000621181 MSCO60682 206 aa9.54□□□□□ -0.88
CLK1-215ENST00000621181 USP5P45974 858 aa9.54□□□□□ -0.88
CLK1-215ENST00000621181 USP17L24Q0WX57 530 aa9.54□□□□□ -0.88
CLK1-215ENST00000621181 POTEEQ6S8J3 1075 aa9.54□□□□□ -0.88
CLK1-215ENST00000621181 FAM161BQ96MY7 647 aa9.54□□□□□ -0.88
CLK1-215ENST00000621181 SERPINB13Q9UIV8 391 aa9.54□□□□□ -0.88
CLK1-215ENST00000621181 CDH23Q9H251 3354 aa9.54□□□□□ -0.88
CLK1-215ENST00000621181 IDH1O75874 414 aaKnown RBP9.54□□□□□ -0.88
CLK1-215ENST00000621181 VCAM1P19320 739 aa9.54□□□□□ -0.88
CLK1-215ENST00000621181 CYP7A1P22680 504 aa9.54□□□□□ -0.88
CLK1-215ENST00000621181 ZAP70P43403 619 aa9.54□□□□□ -0.88
CLK1-215ENST00000621181 ATN1P54259 1190 aaPredicted RBP9.54□□□□□ -0.88
CLK1-215ENST00000621181 USP14P54578 494 aa9.54□□□□□ -0.88
CLK1-215ENST00000621181 DYNLL1P63167 89 aaKnown RBP9.54□□□□□ -0.88
CLK1-215ENST00000621181 ATP2B2Q01814 1243 aa9.54□□□□□ -0.88
CLK1-215ENST00000621181 CERS3Q8IU89 383 aa9.54□□□□□ -0.88
CLK1-215ENST00000621181 PHF6Q8IWS0 365 aaKnown RBP eCLIP9.54□□□□□ -0.88
CLK1-215ENST00000621181 MIGA1Q8NAN2 632 aa9.54□□□□□ -0.88
CLK1-215ENST00000621181 C12orf42Q96LP6 360 aa9.54□□□□□ -0.88
CLK1-215ENST00000621181 GPR108Q9NPR9 543 aa9.54□□□□□ -0.88
CLK1-215ENST00000621181 DDX20Q9UHI6 824 aaKnown RBP9.54□□□□□ -0.88
CLK1-215ENST00000621181 FARP1Q9Y4F1 1045 aaPredicted RBP9.54□□□□□ -0.88
CLK1-215ENST00000621181 MYO5AQ9Y4I1 1855 aaKnown RBP9.53□□□□□ -0.88
CLK1-215ENST00000621181 SLC15A5A6NIM6 579 aa9.53□□□□□ -0.88
CLK1-215ENST00000621181 IGSF3O75054 1194 aa9.53□□□□□ -0.88
CLK1-215ENST00000621181 CERKLQ49MI3 558 aaPredicted RBP9.53□□□□□ -0.88
CLK1-215ENST00000621181 LPAR1Q92633 364 aa9.53□□□□□ -0.88
CLK1-215ENST00000621181 FLRT1Q9NZU1 646 aa9.53□□□□□ -0.88
CLK1-215ENST00000621181 MYH1P12882 1939 aa9.53□□□□□ -0.88
CLK1-215ENST00000621181 FRMPD3Q5JV73 1810 aa9.53□□□□□ -0.88
CLK1-215ENST00000621181 POTEB2H3BUK9 544 aa9.52□□□□□ -0.89
CLK1-215ENST00000621181 DNM1LO00429 736 aa9.52□□□□□ -0.89
CLK1-215ENST00000621181 SURF6O75683 361 aaKnown RBP9.52□□□□□ -0.89
CLK1-215ENST00000621181 CNMDO75829 334 aa9.52□□□□□ -0.89
CLK1-215ENST00000621181 PTPREP23469 700 aa9.52□□□□□ -0.89
CLK1-215ENST00000621181 CYP2C19P33261 490 aa9.52□□□□□ -0.89
CLK1-215ENST00000621181 ABCB5Q2M3G0 1257 aa9.52□□□□□ -0.89
CLK1-215ENST00000621181 ZNF697Q5TEC3 545 aa9.52□□□□□ -0.89
CLK1-215ENST00000621181 TATDN1Q6P1N9 297 aa9.52□□□□□ -0.89
CLK1-215ENST00000621181 CATSPERGQ6ZRH7 1159 aa9.52□□□□□ -0.89
CLK1-215ENST00000621181 ZNF512BQ96KM6 892 aaPredicted RBP9.52□□□□□ -0.89
CLK1-215ENST00000621181 COL25A1Q9BXS0 654 aaPredicted RBP9.52□□□□□ -0.89
CLK1-215ENST00000621181 KIAA1683Q9H0B3 1180 aa9.52□□□□□ -0.89
CLK1-215ENST00000621181 CABP5Q9NP86 173 aa9.52□□□□□ -0.89
CLK1-215ENST00000621181 PIH1D3Q9NQM4 214 aaKnown RBP9.52□□□□□ -0.89
CLK1-215ENST00000621181 TNNQ9UQP3 1299 aa9.52□□□□□ -0.89
CLK1-215ENST00000621181 HOXC6P09630 235 aa9.52□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms