RNA–Protein interactions for RNA: ENST00000553340.1

SYNE3-202, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 1 (best) BASIC

Gene SYNE3, Length 2,615 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-202ENST00000553340 CTAGE9A4FU28 777 aa19.93■□□□□ 0.78
SYNE3-202ENST00000553340 TRIM75PA6NK02 468 aa19.93■□□□□ 0.78
SYNE3-202ENST00000553340 GSG1L2A8MUP6 293 aa19.93■□□□□ 0.78
SYNE3-202ENST00000553340 H3BQF6 201 aa19.93■□□□□ 0.78
SYNE3-202ENST00000553340 USP5P45974 858 aa19.93■□□□□ 0.78
SYNE3-202ENST00000553340 RCAN1P53805 252 aa19.93■□□□□ 0.78
SYNE3-202ENST00000553340 PUM3Q15397 648 aaKnown RBP19.93■□□□□ 0.78
SYNE3-202ENST00000553340 FANCBQ8NB91 859 aa19.93■□□□□ 0.78
SYNE3-202ENST00000553340 MSANTD4Q8NCY6 345 aa19.93■□□□□ 0.78
SYNE3-202ENST00000553340 LPIN2Q92539 896 aa19.93■□□□□ 0.78
SYNE3-202ENST00000553340 MTA3Q9BTC8 594 aa19.93■□□□□ 0.78
SYNE3-202ENST00000553340 CD44P16070 742 aaKnown RBP19.92■□□□□ 0.78
SYNE3-202ENST00000553340 TDO2P48775 406 aa19.92■□□□□ 0.78
SYNE3-202ENST00000553340 BEND6Q5SZJ8 279 aaPredicted RBP19.92■□□□□ 0.78
SYNE3-202ENST00000553340 NUP133Q8WUM0 1156 aa19.92■□□□□ 0.78
SYNE3-202ENST00000553340 GSDMAQ96QA5 445 aa19.92■□□□□ 0.78
SYNE3-202ENST00000553340 TTF2Q9UNY4 1162 aaKnown RBP19.92■□□□□ 0.78
SYNE3-202ENST00000553340 IRS4O14654 1257 aaPredicted RBP19.92■□□□□ 0.78
SYNE3-202ENST00000553340 GTF2E1P29083 439 aaPredicted RBP19.92■□□□□ 0.78
SYNE3-202ENST00000553340 CASP14P31944 242 aa19.92■□□□□ 0.78
SYNE3-202ENST00000553340 PAGE5Q96GU1 130 aa19.92■□□□□ 0.78
SYNE3-202ENST00000553340 SPATA31A3Q5VYP0 1347 aa19.92■□□□□ 0.78
SYNE3-202ENST00000553340 A0A0U1RQJ8 604 aa19.91■□□□□ 0.78
SYNE3-202ENST00000553340 XBP1P17861 261 aa19.91■□□□□ 0.78
SYNE3-202ENST00000553340 GYS2P54840 703 aa19.91■□□□□ 0.78
SYNE3-202ENST00000553340 SH3RF1Q7Z6J0 888 aa19.91■□□□□ 0.78
SYNE3-202ENST00000553340 DNAJC10Q8IXB1 793 aa19.91■□□□□ 0.78
SYNE3-202ENST00000553340 ATRIPQ8WXE1 791 aa19.91■□□□□ 0.78
SYNE3-202ENST00000553340 CWC15Q9P013 229 aaKnown RBP19.91■□□□□ 0.78
SYNE3-202ENST00000553340 TIAM2Q8IVF5 1701 aa19.91■□□□□ 0.78
SYNE3-202ENST00000553340 EIF3JO75822 258 aaKnown RBP19.91■□□□□ 0.78
SYNE3-202ENST00000553340 IL2RBP14784 551 aa19.91■□□□□ 0.78
SYNE3-202ENST00000553340 GNAT2P19087 354 aa19.91■□□□□ 0.78
SYNE3-202ENST00000553340 LMAN1P49257 510 aa19.91■□□□□ 0.78
SYNE3-202ENST00000553340 MCM6Q14566 821 aa19.91■□□□□ 0.78
SYNE3-202ENST00000553340 ZNF654Q8IZM8 581 aa19.91■□□□□ 0.78
SYNE3-202ENST00000553340 GOLGA5Q8TBA6 731 aa19.91■□□□□ 0.78
SYNE3-202ENST00000553340 EPSTI1Q96J88 318 aa19.91■□□□□ 0.78
SYNE3-202ENST00000553340 TMOD3Q9NYL9 352 aa19.91■□□□□ 0.78
SYNE3-202ENST00000553340 ITIH6Q6UXX5 1313 aa19.91■□□□□ 0.78
SYNE3-202ENST00000553340 A0A087X0B3 334 aa19.9■□□□□ 0.78
SYNE3-202ENST00000553340 AKAP17AQ02040 695 aaKnown RBP19.9■□□□□ 0.78
SYNE3-202ENST00000553340 HLFQ16534 295 aa19.9■□□□□ 0.78
SYNE3-202ENST00000553340 MSL3Q8N5Y2 521 aaKnown RBP19.9■□□□□ 0.78
SYNE3-202ENST00000553340 STARD3NLO95772 234 aa19.9■□□□□ 0.78
SYNE3-202ENST00000553340 GYPCP04921 128 aa19.9■□□□□ 0.78
SYNE3-202ENST00000553340 TMTC1Q8IUR5 882 aa19.9■□□□□ 0.78
SYNE3-202ENST00000553340 PNKPQ96T60 521 aa19.9■□□□□ 0.78
SYNE3-202ENST00000553340 RNF26Q9BY78 433 aaPredicted RBP19.9■□□□□ 0.78
SYNE3-202ENST00000553340 RNF41Q9H4P4 317 aaPredicted RBP19.9■□□□□ 0.78
SYNE3-202ENST00000553340 PDE11AQ9HCR9 933 aa19.9■□□□□ 0.78
SYNE3-202ENST00000553340 PRKAB2O43741 272 aa19.89■□□□□ 0.78
SYNE3-202ENST00000553340 FECHP22830 423 aa19.89■□□□□ 0.78
SYNE3-202ENST00000553340 DPYDQ12882 1025 aa19.89■□□□□ 0.78
SYNE3-202ENST00000553340 SLC35F6Q8N357 371 aa19.89■□□□□ 0.78
SYNE3-202ENST00000553340 FERMT2Q96AC1 680 aa19.89■□□□□ 0.78
SYNE3-202ENST00000553340 UBAC1Q9BSL1 405 aa19.89■□□□□ 0.78
SYNE3-202ENST00000553340 PRDM11Q9NQV5 511 aa19.89■□□□□ 0.78
SYNE3-202ENST00000553340 SLC4A4Q9Y6R1 1079 aa19.89■□□□□ 0.78
SYNE3-202ENST00000553340 PPP1R3GB7ZBB8 358 aa19.89■□□□□ 0.77
SYNE3-202ENST00000553340 FGFR2P21802 821 aa19.89■□□□□ 0.77
SYNE3-202ENST00000553340 FXR1P51114 621 aaKnown RBP eCLIP19.89■□□□□ 0.77
SYNE3-202ENST00000553340 HELBQ8NG08 1087 aaPredicted RBP19.89■□□□□ 0.77
SYNE3-202ENST00000553340 SYMPKQ92797 1274 aaKnown RBP19.89■□□□□ 0.77
SYNE3-202ENST00000553340 TRMT112Q9UI30 125 aaKnown RBP19.89■□□□□ 0.77
SYNE3-202ENST00000553340 MROH5Q6ZUA9 1318 aa19.89■□□□□ 0.77
SYNE3-202ENST00000553340 PDE8AO60658 829 aa19.89■□□□□ 0.77
SYNE3-202ENST00000553340 BMP15O95972 392 aa19.89■□□□□ 0.77
SYNE3-202ENST00000553340 CASP1P29466 404 aa19.89■□□□□ 0.77
SYNE3-202ENST00000553340 RASGRF1Q13972 1273 aa19.89■□□□□ 0.77
SYNE3-202ENST00000553340 PPP2R5BQ15173 497 aa19.89■□□□□ 0.77
SYNE3-202ENST00000553340 SMYD4Q8IYR2 804 aaPredicted RBP19.89■□□□□ 0.77
SYNE3-202ENST00000553340 NAPGQ99747 312 aaPredicted RBP19.89■□□□□ 0.77
SYNE3-202ENST00000553340 L1RE1Q9UN81 338 aa19.89■□□□□ 0.77
SYNE3-202ENST00000553340 MYH3P11055 1940 aa19.88■□□□□ 0.77
SYNE3-202ENST00000553340 SLC5A1P13866 664 aa19.88■□□□□ 0.77
SYNE3-202ENST00000553340 PIP4K2BP78356 416 aa19.88■□□□□ 0.77
SYNE3-202ENST00000553340 WHAMMP3Q1A5X7 153 aa19.88■□□□□ 0.77
SYNE3-202ENST00000553340 VPS18Q9P253 973 aa19.88■□□□□ 0.77
SYNE3-202ENST00000553340 MYO1AQ9UBC5 1043 aa19.88■□□□□ 0.77
SYNE3-202ENST00000553340 PNPLA7Q6ZV29 1317 aa19.88■□□□□ 0.77
SYNE3-202ENST00000553340 CTAGE15A4D2H0 777 aa19.88■□□□□ 0.77
SYNE3-202ENST00000553340 FAM205CA6NFA0 338 aa19.88■□□□□ 0.77
SYNE3-202ENST00000553340 TUBBP07437 444 aa19.88■□□□□ 0.77
SYNE3-202ENST00000553340 CTAGE8P0CG41 777 aa19.88■□□□□ 0.77
SYNE3-202ENST00000553340 KRT2P35908 639 aa19.88■□□□□ 0.77
SYNE3-202ENST00000553340 CTAGE6Q86UF2 777 aa19.88■□□□□ 0.77
SYNE3-202ENST00000553340 CTAGE4Q8IX94 777 aa19.88■□□□□ 0.77
SYNE3-202ENST00000553340 LCORLQ8N3X6 602 aa19.88■□□□□ 0.77
SYNE3-202ENST00000553340 ACRBPQ8NEB7 543 aa19.88■□□□□ 0.77
SYNE3-202ENST00000553340 GBP3Q9H0R5 595 aa19.88■□□□□ 0.77
SYNE3-202ENST00000553340 ABCB6Q9NP58 842 aa19.88■□□□□ 0.77
SYNE3-202ENST00000553340 FEZ2Q9UHY8 353 aaPredicted RBP19.88■□□□□ 0.77
SYNE3-202ENST00000553340 CDC5LQ99459 802 aaKnown RBP19.87■□□□□ 0.77
SYNE3-202ENST00000553340 VPS54Q9P1Q0 977 aa19.87■□□□□ 0.77
SYNE3-202ENST00000553340 RHOXF2BP0C7M4 288 aa19.87■□□□□ 0.77
SYNE3-202ENST00000553340 RHOXF2Q9BQY4 288 aa19.87■□□□□ 0.77
SYNE3-202ENST00000553340 RTL9Q8NET4 1388 aa19.86■□□□□ 0.77
SYNE3-202ENST00000553340 N4BP3O15049 544 aa19.86■□□□□ 0.77
SYNE3-202ENST00000553340 ACTN2P35609 894 aa19.86■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms