RNA–Protein interactions for RNA: ENST00000533242.1

NEDD8-207, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 1 (best)

Gene NEDD8, Length 2,300 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-207ENST00000533242 MORN1Q5T089 497 aa9.89□□□□□ -0.83
NEDD8-207ENST00000533242 TTC22Q5TAA0 569 aa9.89□□□□□ -0.83
NEDD8-207ENST00000533242 LHX8Q68G74 356 aa9.89□□□□□ -0.83
NEDD8-207ENST00000533242 NOL10Q9BSC4 688 aaKnown RBP9.89□□□□□ -0.83
NEDD8-207ENST00000533242 TXNRD2Q9NNW7 524 aa9.89□□□□□ -0.83
NEDD8-207ENST00000533242 ARID4AP29374 1257 aaPredicted RBP9.89□□□□□ -0.83
NEDD8-207ENST00000533242 CCND3P30281 292 aaPredicted RBP9.89□□□□□ -0.83
NEDD8-207ENST00000533242 PLEKHH3Q7Z736 793 aa9.89□□□□□ -0.83
NEDD8-207ENST00000533242 HSCBQ8IWL3 235 aa9.89□□□□□ -0.83
NEDD8-207ENST00000533242 APBA2Q99767 749 aa9.89□□□□□ -0.83
NEDD8-207ENST00000533242 COL25A1Q9BXS0 654 aaPredicted RBP9.89□□□□□ -0.83
NEDD8-207ENST00000533242 FOXD4L1Q9NU39 408 aa9.89□□□□□ -0.83
NEDD8-207ENST00000533242 RAI14Q9P0K7 980 aa9.89□□□□□ -0.83
NEDD8-207ENST00000533242 RBPJLQ9UBG7 517 aa9.89□□□□□ -0.83
NEDD8-207ENST00000533242 MYH1P12882 1939 aa9.89□□□□□ -0.83
NEDD8-207ENST00000533242 MYO5AQ9Y4I1 1855 aaKnown RBP9.89□□□□□ -0.83
NEDD8-207ENST00000533242 CDC45O75419 566 aa9.88□□□□□ -0.83
NEDD8-207ENST00000533242 PLCG2P16885 1265 aa9.88□□□□□ -0.83
NEDD8-207ENST00000533242 ERVK-9P63128 1117 aa9.88□□□□□ -0.83
NEDD8-207ENST00000533242 ERVK-24P63145 666 aa9.88□□□□□ -0.83
NEDD8-207ENST00000533242 GPR142Q7Z601 462 aa9.88□□□□□ -0.83
NEDD8-207ENST00000533242 METTL16Q86W50 562 aaKnown RBP9.88□□□□□ -0.83
NEDD8-207ENST00000533242 FOXP4Q8IVH2 680 aaPredicted RBP9.88□□□□□ -0.83
NEDD8-207ENST00000533242 RPAP2Q8IXW5 612 aaPredicted RBP9.88□□□□□ -0.83
NEDD8-207ENST00000533242 SH3RF3Q8TEJ3 882 aaPredicted RBP9.88□□□□□ -0.83
NEDD8-207ENST00000533242 SNX21Q969T3 373 aa9.88□□□□□ -0.83
NEDD8-207ENST00000533242 NEUROD6Q96NK8 337 aa9.88□□□□□ -0.83
NEDD8-207ENST00000533242 USP17L10C9JJH3 530 aa9.88□□□□□ -0.83
NEDD8-207ENST00000533242 POTEB2H3BUK9 544 aa9.88□□□□□ -0.83
NEDD8-207ENST00000533242 UQCRFS1P1P0C7P4 283 aa9.88□□□□□ -0.83
NEDD8-207ENST00000533242 SDSP20132 328 aa9.88□□□□□ -0.83
NEDD8-207ENST00000533242 MCM4P33991 863 aa9.88□□□□□ -0.83
NEDD8-207ENST00000533242 MDM2Q00987 491 aaPredicted RBP9.88□□□□□ -0.83
NEDD8-207ENST00000533242 MTX1Q13505 466 aa9.88□□□□□ -0.83
NEDD8-207ENST00000533242 GORABQ5T7V8 394 aa9.88□□□□□ -0.83
NEDD8-207ENST00000533242 TSHZ3Q63HK5 1081 aa9.88□□□□□ -0.83
NEDD8-207ENST00000533242 USP17L2Q6R6M4 530 aa9.88□□□□□ -0.83
NEDD8-207ENST00000533242 PHF6Q8IWS0 365 aaKnown RBP eCLIP9.88□□□□□ -0.83
NEDD8-207ENST00000533242 CCAR1Q8IX12 1150 aaKnown RBP9.88□□□□□ -0.83
NEDD8-207ENST00000533242 CHMP5Q9NZZ3 219 aa9.88□□□□□ -0.83
NEDD8-207ENST00000533242 RLFQ13129 1914 aa9.88□□□□□ -0.83
NEDD8-207ENST00000533242 PEX10O60683 326 aa9.87□□□□□ -0.83
NEDD8-207ENST00000533242 BAG3O95817 575 aa9.87□□□□□ -0.83
NEDD8-207ENST00000533242 JAG1P78504 1218 aa9.87□□□□□ -0.83
NEDD8-207ENST00000533242 CCL14Q16627 93 aa9.87□□□□□ -0.83
NEDD8-207ENST00000533242 Q3C1V9 767 aa9.87□□□□□ -0.83
NEDD8-207ENST00000533242 PI16Q6UXB8 463 aa9.87□□□□□ -0.83
NEDD8-207ENST00000533242 GUCD1Q96NT3 240 aa9.87□□□□□ -0.83
NEDD8-207ENST00000533242 LBHD1Q9BQE6 289 aaPredicted RBP9.87□□□□□ -0.83
NEDD8-207ENST00000533242 TRIM34Q9BYJ4 488 aa9.87□□□□□ -0.83
NEDD8-207ENST00000533242 ZNF236Q9UL36 1845 aa9.87□□□□□ -0.83
NEDD8-207ENST00000533242 PNMA6EA0A0J9YXQ4 647 aa9.87□□□□□ -0.83
NEDD8-207ENST00000533242 SRGAP3O43295 1099 aa9.87□□□□□ -0.83
NEDD8-207ENST00000533242 GLRX3O76003 335 aaKnown RBP9.87□□□□□ -0.83
NEDD8-207ENST00000533242 GNAI3P08754 354 aa9.87□□□□□ -0.83
NEDD8-207ENST00000533242 PPP4CP60510 307 aa9.87□□□□□ -0.83
NEDD8-207ENST00000533242 MAP2K5Q13163 448 aa9.87□□□□□ -0.83
NEDD8-207ENST00000533242 PORCNQ9H237 461 aa9.87□□□□□ -0.83
NEDD8-207ENST00000533242 DNAJC18Q9H819 358 aa9.87□□□□□ -0.83
NEDD8-207ENST00000533242 LRP2BPQ9P2M1 347 aa9.87□□□□□ -0.83
NEDD8-207ENST00000533242 ZBTB21Q9ULJ3 1066 aa9.87□□□□□ -0.83
NEDD8-207ENST00000533242 EXOC6BQ9Y2D4 811 aa9.87□□□□□ -0.83
NEDD8-207ENST00000533242 IGSF3O75054 1194 aa9.86□□□□□ -0.83
NEDD8-207ENST00000533242 MFSD14CQ5VZR4 134 aa9.86□□□□□ -0.83
NEDD8-207ENST00000533242 NAA16Q6N069 864 aaPredicted RBP9.86□□□□□ -0.83
NEDD8-207ENST00000533242 CRACR2BQ8N4Y2 399 aaPredicted RBP9.86□□□□□ -0.83
NEDD8-207ENST00000533242 PAGR1Q9BTK6 254 aa9.86□□□□□ -0.83
NEDD8-207ENST00000533242 CWC22Q9HCG8 908 aaKnown RBP9.86□□□□□ -0.83
NEDD8-207ENST00000533242 RABGAP1Q9Y3P9 1069 aa9.86□□□□□ -0.83
NEDD8-207ENST00000533242 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP9.86□□□□□ -0.83
NEDD8-207ENST00000533242 SLC15A5A6NIM6 579 aa9.85□□□□□ -0.83
NEDD8-207ENST00000533242 MSCO60682 206 aa9.85□□□□□ -0.83
NEDD8-207ENST00000533242 MCAMP43121 646 aa9.85□□□□□ -0.83
NEDD8-207ENST00000533242 CCNA1P78396 465 aa9.85□□□□□ -0.83
NEDD8-207ENST00000533242 POTEEQ6S8J3 1075 aa9.85□□□□□ -0.83
NEDD8-207ENST00000533242 EDC3Q96F86 508 aaKnown RBP9.85□□□□□ -0.83
NEDD8-207ENST00000533242 C12orf42Q96LP6 360 aa9.85□□□□□ -0.83
NEDD8-207ENST00000533242 EMILIN3Q9NT22 766 aa9.85□□□□□ -0.83
NEDD8-207ENST00000533242 AATFQ9NY61 560 aaKnown RBP eCLIP9.85□□□□□ -0.83
NEDD8-207ENST00000533242 FLT1P17948 1338 aa9.85□□□□□ -0.83
NEDD8-207ENST00000533242 CNMDO75829 334 aa9.85□□□□□ -0.83
NEDD8-207ENST00000533242 GDF11O95390 407 aa9.85□□□□□ -0.83
NEDD8-207ENST00000533242 ZNF697Q5TEC3 545 aa9.85□□□□□ -0.83
NEDD8-207ENST00000533242 MAPKAPK5Q8IW41 473 aa9.85□□□□□ -0.83
NEDD8-207ENST00000533242 TGFBRAP1Q8WUH2 860 aa9.85□□□□□ -0.83
NEDD8-207ENST00000533242 SENP6Q9GZR1 1112 aaPredicted RBP9.85□□□□□ -0.83
NEDD8-207ENST00000533242 GZF1Q9H116 711 aaPredicted RBP9.85□□□□□ -0.83
NEDD8-207ENST00000533242 DDX20Q9UHI6 824 aaKnown RBP9.85□□□□□ -0.83
NEDD8-207ENST00000533242 SZT2Q5T011 3432 aa9.85□□□□□ -0.83
NEDD8-207ENST00000533242 USP17L15C9J2P7 530 aa9.84□□□□□ -0.83
NEDD8-207ENST00000533242 USP17L13C9JLJ4 530 aa9.84□□□□□ -0.83
NEDD8-207ENST00000533242 USP17L11C9JVI0 530 aa9.84□□□□□ -0.83
NEDD8-207ENST00000533242 USP17L18D6R9N7 530 aa9.84□□□□□ -0.83
NEDD8-207ENST00000533242 USP17L22D6RA61 530 aa9.84□□□□□ -0.83
NEDD8-207ENST00000533242 USP17L17D6RBQ6 530 aa9.84□□□□□ -0.83
NEDD8-207ENST00000533242 USP17L19D6RCP7 530 aa9.84□□□□□ -0.83
NEDD8-207ENST00000533242 USP17L20D6RJB6 530 aa9.84□□□□□ -0.83
NEDD8-207ENST00000533242 HLA-DOAP06340 250 aa9.84□□□□□ -0.83
NEDD8-207ENST00000533242 PTPREP23469 700 aa9.84□□□□□ -0.83
NEDD8-207ENST00000533242 USP17L24Q0WX57 530 aa9.84□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms