RNA–Protein interactions for RNA: ENST00000470006.1

NCKIPSD-209, Transcript of NCK interacting protein with SH3 domain, humanhuman

TSL 2

Gene NCKIPSD, Length 814 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NCKIPSD-209ENST00000470006 USP17L24Q0WX57 530 aa23.29■■□□□ 1.32
NCKIPSD-209ENST00000470006 GJC2Q5T442 439 aaPredicted RBP23.29■■□□□ 1.32
NCKIPSD-209ENST00000470006 ATF7IPQ6VMQ6 1270 aa23.29■■□□□ 1.32
NCKIPSD-209ENST00000470006 MYLIPQ8WY64 445 aa23.29■■□□□ 1.32
NCKIPSD-209ENST00000470006 PRDM6Q9NQX0 595 aa23.29■■□□□ 1.32
NCKIPSD-209ENST00000470006 SNRKQ9NRH2 765 aa23.29■■□□□ 1.32
NCKIPSD-209ENST00000470006 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP23.29■■□□□ 1.32
NCKIPSD-209ENST00000470006 GH2P01242 217 aa23.28■■□□□ 1.32
NCKIPSD-209ENST00000470006 POTEEQ6S8J3 1075 aa23.28■■□□□ 1.32
NCKIPSD-209ENST00000470006 CNMDO75829 334 aa23.27■■□□□ 1.32
NCKIPSD-209ENST00000470006 C9orf50Q5SZB4 431 aa23.27■■□□□ 1.32
NCKIPSD-209ENST00000470006 ARRDC4Q8NCT1 418 aa23.27■■□□□ 1.32
NCKIPSD-209ENST00000470006 PRUNE2Q8WUY3 3088 aa23.27■■□□□ 1.32
NCKIPSD-209ENST00000470006 KBTBD13C9JR72 458 aa23.26■■□□□ 1.31
NCKIPSD-209ENST00000470006 GNAI3P08754 354 aa23.26■■□□□ 1.31
NCKIPSD-209ENST00000470006 FOSL2P15408 326 aa23.26■■□□□ 1.31
NCKIPSD-209ENST00000470006 SLFN5Q08AF3 891 aa23.26■■□□□ 1.31
NCKIPSD-209ENST00000470006 G3BP1Q13283 466 aaKnown RBP eCLIP23.26■■□□□ 1.31
NCKIPSD-209ENST00000470006 RAB3GAP1Q15042 981 aa23.26■■□□□ 1.31
NCKIPSD-209ENST00000470006 TTC39AQ5SRH9 613 aa23.26■■□□□ 1.31
NCKIPSD-209ENST00000470006 BADQ92934 168 aa23.26■■□□□ 1.31
NCKIPSD-209ENST00000470006 CDK5RAP2Q96SN8 1893 aa23.26■■□□□ 1.31
NCKIPSD-209ENST00000470006 LTBP2Q14767 1821 aa23.25■■□□□ 1.31
NCKIPSD-209ENST00000470006 PPP4CP60510 307 aa23.25■■□□□ 1.31
NCKIPSD-209ENST00000470006 ANO1Q5XXA6 986 aa23.25■■□□□ 1.31
NCKIPSD-209ENST00000470006 SLC39A5Q6ZMH5 540 aa23.25■■□□□ 1.31
NCKIPSD-209ENST00000470006 DPP9Q86TI2 863 aa23.25■■□□□ 1.31
NCKIPSD-209ENST00000470006 METTL16Q86W50 562 aaKnown RBP23.25■■□□□ 1.31
NCKIPSD-209ENST00000470006 NPLOC4Q8TAT6 608 aa23.25■■□□□ 1.31
NCKIPSD-209ENST00000470006 USP14P54578 494 aa23.24■■□□□ 1.31
NCKIPSD-209ENST00000470006 CATSPERGQ6ZRH7 1159 aa23.24■■□□□ 1.31
NCKIPSD-209ENST00000470006 TRPV1Q8NER1 839 aa23.24■■□□□ 1.31
NCKIPSD-209ENST00000470006 SYMPKQ92797 1274 aaKnown RBP23.24■■□□□ 1.31
NCKIPSD-209ENST00000470006 GRB14Q14449 540 aa23.23■■□□□ 1.31
NCKIPSD-209ENST00000470006 ADGRA1Q86SQ6 560 aa23.23■■□□□ 1.31
NCKIPSD-209ENST00000470006 BTBD7Q9P203 1132 aa23.23■■□□□ 1.31
NCKIPSD-209ENST00000470006 FOCADQ5VW36 1801 aa23.22■■□□□ 1.31
NCKIPSD-209ENST00000470006 HOXC6P09630 235 aa23.22■■□□□ 1.31
NCKIPSD-209ENST00000470006 SMAD3P84022 425 aaKnown RBP23.22■■□□□ 1.31
NCKIPSD-209ENST00000470006 TRIM60Q495X7 471 aa23.22■■□□□ 1.31
NCKIPSD-209ENST00000470006 CCDC158Q5M9N0 1113 aa23.22■■□□□ 1.31
NCKIPSD-209ENST00000470006 C12orf42Q96LP6 360 aa23.22■■□□□ 1.31
NCKIPSD-209ENST00000470006 TTYH1Q9H313 450 aaPredicted RBP23.22■■□□□ 1.31
NCKIPSD-209ENST00000470006 SPTBN5Q9NRC6 3674 aaKnown RBP23.22■■□□□ 1.31
NCKIPSD-209ENST00000470006 RLFQ13129 1914 aa23.21■■□□□ 1.31
NCKIPSD-209ENST00000470006 VCAM1P19320 739 aa23.21■■□□□ 1.31
NCKIPSD-209ENST00000470006 USP5P45974 858 aa23.21■■□□□ 1.31
NCKIPSD-209ENST00000470006 DYNLL1P63167 89 aaKnown RBP23.21■■□□□ 1.31
NCKIPSD-209ENST00000470006 FERMT2Q96AC1 680 aa23.21■■□□□ 1.31
NCKIPSD-209ENST00000470006 CDCA7LQ96GN5 454 aa23.21■■□□□ 1.31
NCKIPSD-209ENST00000470006 MYH1P12882 1939 aa23.2■■□□□ 1.3
NCKIPSD-209ENST00000470006 CYBAP13498 195 aa23.2■■□□□ 1.3
NCKIPSD-209ENST00000470006 MTX1Q13505 466 aa23.2■■□□□ 1.3
NCKIPSD-209ENST00000470006 RPAP3Q9H6T3 665 aaPredicted RBP23.2■■□□□ 1.3
NCKIPSD-209ENST00000470006 CABP5Q9NP86 173 aa23.2■■□□□ 1.3
NCKIPSD-209ENST00000470006 ADCYAP1R1P41586 468 aa23.19■■□□□ 1.3
NCKIPSD-209ENST00000470006 ABCB5Q2M3G0 1257 aa23.19■■□□□ 1.3
NCKIPSD-209ENST00000470006 CERKLQ49MI3 558 aaPredicted RBP23.19■■□□□ 1.3
NCKIPSD-209ENST00000470006 ACER1Q8TDN7 264 aa23.19■■□□□ 1.3
NCKIPSD-209ENST00000470006 KIAA1683Q9H0B3 1180 aa23.19■■□□□ 1.3
NCKIPSD-209ENST00000470006 TTC28Q96AY4 2481 aa23.19■■□□□ 1.3
NCKIPSD-209ENST00000470006 MYO5AQ9Y4I1 1855 aaKnown RBP23.18■■□□□ 1.3
NCKIPSD-209ENST00000470006 SPDYE16A6NNV3 312 aaPredicted RBP23.18■■□□□ 1.3
NCKIPSD-209ENST00000470006 CYP2E1P05181 493 aaPredicted RBP23.18■■□□□ 1.3
NCKIPSD-209ENST00000470006 CYP7A1P22680 504 aa23.18■■□□□ 1.3
NCKIPSD-209ENST00000470006 ADORA2AP29274 412 aa23.18■■□□□ 1.3
NCKIPSD-209ENST00000470006 OS9Q13438 667 aaPredicted RBP23.18■■□□□ 1.3
NCKIPSD-209ENST00000470006 SH3RF1Q7Z6J0 888 aa23.18■■□□□ 1.3
NCKIPSD-209ENST00000470006 RNPC3Q96LT9 517 aaKnown RBP23.18■■□□□ 1.3
NCKIPSD-209ENST00000470006 PDLIM7Q9NR12 457 aa23.18■■□□□ 1.3
NCKIPSD-209ENST00000470006 SERPINB13Q9UIV8 391 aa23.18■■□□□ 1.3
NCKIPSD-209ENST00000470006 SEPT4O43236 478 aa23.17■■□□□ 1.3
NCKIPSD-209ENST00000470006 OLFML2BQ68BL8 750 aa23.17■■□□□ 1.3
NCKIPSD-209ENST00000470006 TATDN1Q6P1N9 297 aa23.17■■□□□ 1.3
NCKIPSD-209ENST00000470006 LBX2Q6XYB7 198 aa23.17■■□□□ 1.3
NCKIPSD-209ENST00000470006 SLC5A4Q9NY91 659 aa23.17■■□□□ 1.3
NCKIPSD-209ENST00000470006 TRIM43BA6NCK2 446 aa23.16■■□□□ 1.3
NCKIPSD-209ENST00000470006 STRNO43815 780 aa23.16■■□□□ 1.3
NCKIPSD-209ENST00000470006 GNAI2P04899 355 aa23.16■■□□□ 1.3
NCKIPSD-209ENST00000470006 PRAMEF19Q5SWL8 479 aa23.16■■□□□ 1.3
NCKIPSD-209ENST00000470006 MIGA1Q8NAN2 632 aa23.16■■□□□ 1.3
NCKIPSD-209ENST00000470006 TRIM43Q96BQ3 446 aaPredicted RBP23.16■■□□□ 1.3
NCKIPSD-209ENST00000470006 DBNDD2Q9BQY9 259 aa23.16■■□□□ 1.3
NCKIPSD-209ENST00000470006 CDH23Q9H251 3354 aa23.15■■□□□ 1.3
NCKIPSD-209ENST00000470006 CT47B1P0C2W7 299 aaPredicted RBP23.15■■□□□ 1.3
NCKIPSD-209ENST00000470006 ZAP70P43403 619 aa23.15■■□□□ 1.3
NCKIPSD-209ENST00000470006 PLS1Q14651 629 aa23.15■■□□□ 1.3
NCKIPSD-209ENST00000470006 TTC6Q86TZ1 520 aa23.15■■□□□ 1.3
NCKIPSD-209ENST00000470006 MOV10L1Q9BXT6 1211 aaKnown RBP23.15■■□□□ 1.3
NCKIPSD-209ENST00000470006 TANGO6Q9C0B7 1094 aa23.15■■□□□ 1.3
NCKIPSD-209ENST00000470006 PIH1D3Q9NQM4 214 aaKnown RBP23.15■■□□□ 1.3
NCKIPSD-209ENST00000470006 PNMA6EA0A0J9YXQ4 647 aa23.14■■□□□ 1.29
NCKIPSD-209ENST00000470006 IDH1O75874 414 aaKnown RBP23.14■■□□□ 1.29
NCKIPSD-209ENST00000470006 TLE2Q04725 743 aa23.14■■□□□ 1.29
NCKIPSD-209ENST00000470006 LRRC41Q15345 812 aa23.14■■□□□ 1.29
NCKIPSD-209ENST00000470006 TNNI3KQ59H18 835 aa23.14■■□□□ 1.29
NCKIPSD-209ENST00000470006 HOXC10Q9NYD6 342 aa23.14■■□□□ 1.29
NCKIPSD-209ENST00000470006 TACC3Q9Y6A5 838 aa23.14■■□□□ 1.29
NCKIPSD-209ENST00000470006 FPGT-TNNI3KV9GXZ4 949 aa23.14■■□□□ 1.29
NCKIPSD-209ENST00000470006 RAG1P15918 1043 aa23.13■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms