RNA–Protein interactions for RNA: ENST00000356000.7

RTN3-205, Transcript of reticulon 3, humanhuman

TSL 2 BASIC

Gene RTN3, Length 2,645 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-205ENST00000356000 NCAPG2Q86XI2 1143 aa17.68■□□□□ 0.42
RTN3-205ENST00000356000 SUDS3Q9H7L9 328 aaPredicted RBP17.68■□□□□ 0.42
RTN3-205ENST00000356000 C15orf41Q9Y2V0 281 aa17.68■□□□□ 0.42
RTN3-205ENST00000356000 SURF6O75683 361 aaKnown RBP17.68■□□□□ 0.42
RTN3-205ENST00000356000 ZMYND10O75800 440 aa17.68■□□□□ 0.42
RTN3-205ENST00000356000 FAM107AO95990 144 aa17.68■□□□□ 0.42
RTN3-205ENST00000356000 HDLBPQ00341 1268 aaKnown RBP17.68■□□□□ 0.42
RTN3-205ENST00000356000 KCNG4Q8TDN1 519 aa17.68■□□□□ 0.42
RTN3-205ENST00000356000 NUP58Q9BVL2 599 aa17.68■□□□□ 0.42
RTN3-205ENST00000356000 YIPF3Q9GZM5 350 aa17.68■□□□□ 0.42
RTN3-205ENST00000356000 ITSN1Q15811 1721 aa17.68■□□□□ 0.42
RTN3-205ENST00000356000 PPP1R37O75864 691 aa17.68■□□□□ 0.42
RTN3-205ENST00000356000 ATP6V1G2O95670 118 aa17.68■□□□□ 0.42
RTN3-205ENST00000356000 SETSIPP0DME0 302 aa17.68■□□□□ 0.42
RTN3-205ENST00000356000 PDE6BP35913 854 aa17.68■□□□□ 0.42
RTN3-205ENST00000356000 OLFM4Q6UX06 510 aa17.68■□□□□ 0.42
RTN3-205ENST00000356000 NOD2Q9HC29 1040 aa17.68■□□□□ 0.42
RTN3-205ENST00000356000 PLCH1Q4KWH8 1693 aa17.67■□□□□ 0.42
RTN3-205ENST00000356000 BUB1BO60566 1050 aaPredicted RBP17.67■□□□□ 0.42
RTN3-205ENST00000356000 PPFIA3O75145 1194 aa17.67■□□□□ 0.42
RTN3-205ENST00000356000 PAPOLAP51003 745 aaKnown RBP17.67■□□□□ 0.42
RTN3-205ENST00000356000 MYO1EQ12965 1108 aa17.67■□□□□ 0.42
RTN3-205ENST00000356000 ANKRD20A8PQ5CZ79 823 aa17.67■□□□□ 0.42
RTN3-205ENST00000356000 CRELD2Q6UXH1 353 aaPredicted RBP17.67■□□□□ 0.42
RTN3-205ENST00000356000 SPATA21Q7Z572 469 aa17.67■□□□□ 0.42
RTN3-205ENST00000356000 NSUN7Q8NE18 718 aaKnown RBP17.67■□□□□ 0.42
RTN3-205ENST00000356000 CUL5Q93034 780 aa17.67■□□□□ 0.42
RTN3-205ENST00000356000 STAMBPL1Q96FJ0 436 aa17.67■□□□□ 0.42
RTN3-205ENST00000356000 GJD4Q96KN9 370 aaPredicted RBP17.67■□□□□ 0.42
RTN3-205ENST00000356000 MMS19Q96T76 1030 aa17.67■□□□□ 0.42
RTN3-205ENST00000356000 OSBPL7Q9BZF2 842 aa17.67■□□□□ 0.42
RTN3-205ENST00000356000 HOOK1Q9UJC3 728 aaKnown RBP17.67■□□□□ 0.42
RTN3-205ENST00000356000 NUTM2FA1L443 756 aa17.67■□□□□ 0.42
RTN3-205ENST00000356000 CDKL5O76039 1030 aa17.67■□□□□ 0.42
RTN3-205ENST00000356000 ADAMTS2O95450 1211 aa17.67■□□□□ 0.42
RTN3-205ENST00000356000 ABL1P00519 1130 aa17.67■□□□□ 0.42
RTN3-205ENST00000356000 ROR2Q01974 943 aaKnown RBP17.67■□□□□ 0.42
RTN3-205ENST00000356000 POLA2Q14181 598 aa17.67■□□□□ 0.42
RTN3-205ENST00000356000 SF3A1Q15459 793 aaKnown RBP17.67■□□□□ 0.42
RTN3-205ENST00000356000 NUTM2GQ5VZR2 741 aa17.67■□□□□ 0.42
RTN3-205ENST00000356000 ALS2CLQ60I27 953 aa17.67■□□□□ 0.42
RTN3-205ENST00000356000 RGL1Q9NZL6 768 aa17.67■□□□□ 0.42
RTN3-205ENST00000356000 HMG20BQ9P0W2 317 aa17.67■□□□□ 0.42
RTN3-205ENST00000356000 PCDHGA4Q9Y5G9 962 aa17.67■□□□□ 0.42
RTN3-205ENST00000356000 COL14A1Q05707 1796 aaKnown RBP17.66■□□□□ 0.42
RTN3-205ENST00000356000 SPDYE3A6NKU9 549 aa17.66■□□□□ 0.42
RTN3-205ENST00000356000 OPLAHO14841 1288 aa17.66■□□□□ 0.42
RTN3-205ENST00000356000 ZNF18P17022 549 aa17.66■□□□□ 0.42
RTN3-205ENST00000356000 GCLCP48506 637 aaPredicted RBP17.66■□□□□ 0.42
RTN3-205ENST00000356000 FOSBP53539 338 aa17.66■□□□□ 0.42
RTN3-205ENST00000356000 STK38Q15208 465 aa17.66■□□□□ 0.42
RTN3-205ENST00000356000 RBM12BQ8IXT5 1001 aaKnown RBP17.66■□□□□ 0.42
RTN3-205ENST00000356000 NUP133Q8WUM0 1156 aa17.66■□□□□ 0.42
RTN3-205ENST00000356000 RNPC3Q96LT9 517 aaKnown RBP17.66■□□□□ 0.42
RTN3-205ENST00000356000 ZRANB1Q9UGI0 708 aa17.66■□□□□ 0.42
RTN3-205ENST00000356000 ARHGEF28Q8N1W1 1705 aaKnown RBP17.66■□□□□ 0.42
RTN3-205ENST00000356000 YEATS4O95619 227 aa17.66■□□□□ 0.42
RTN3-205ENST00000356000 FERP16591 822 aa17.66■□□□□ 0.42
RTN3-205ENST00000356000 ATP1A2P50993 1020 aa17.66■□□□□ 0.42
RTN3-205ENST00000356000 SPRED3Q2MJR0 410 aa17.66■□□□□ 0.42
RTN3-205ENST00000356000 LACTB2Q53H82 288 aaPredicted RBP17.66■□□□□ 0.42
RTN3-205ENST00000356000 SPECC1Q5M775 1068 aa17.66■□□□□ 0.42
RTN3-205ENST00000356000 HHATQ5VTY9 493 aa17.66■□□□□ 0.42
RTN3-205ENST00000356000 SND1Q7KZF4 910 aaKnown RBP eCLIP17.66■□□□□ 0.421e-9■■■■□ 22.5
RTN3-205ENST00000356000 B4GALNT2Q8NHY0 566 aa17.66■□□□□ 0.42
RTN3-205ENST00000356000 KDRP35968 1356 aa17.66■□□□□ 0.42
RTN3-205ENST00000356000 KIF20BQ96Q89 1820 aa17.65■□□□□ 0.42
RTN3-205ENST00000356000 PYGBP11216 843 aa17.65■□□□□ 0.42
RTN3-205ENST00000356000 PFKFB1P16118 471 aa17.65■□□□□ 0.42
RTN3-205ENST00000356000 CMA1P23946 247 aa17.65■□□□□ 0.42
RTN3-205ENST00000356000 NR1I3Q14994 352 aa17.65■□□□□ 0.42
RTN3-205ENST00000356000 VPS72Q15906 364 aa17.65■□□□□ 0.42
RTN3-205ENST00000356000 ALS2CR12Q96Q35 445 aa17.65■□□□□ 0.42
RTN3-205ENST00000356000 ANAPC4Q9UJX5 808 aa17.65■□□□□ 0.42
RTN3-205ENST00000356000 GLI3P10071 1580 aa17.65■□□□□ 0.42
RTN3-205ENST00000356000 LINGO3P0C6S8 592 aa17.65■□□□□ 0.42
RTN3-205ENST00000356000 GUCY1A3Q02108 690 aa17.65■□□□□ 0.42
RTN3-205ENST00000356000 EPAS1Q99814 870 aa17.65■□□□□ 0.42
RTN3-205ENST00000356000 TRPM3Q9HCF6 1732 aaPredicted RBP17.64■□□□□ 0.41
RTN3-205ENST00000356000 A6NHS1 94 aa17.64■□□□□ 0.41
RTN3-205ENST00000356000 SPTLC2O15270 562 aa17.64■□□□□ 0.41
RTN3-205ENST00000356000 DNAJC8O75937 253 aaPredicted RBP17.64■□□□□ 0.41
RTN3-205ENST00000356000 FECHP22830 423 aa17.64■□□□□ 0.41
RTN3-205ENST00000356000 SCTRP47872 440 aa17.64■□□□□ 0.41
RTN3-205ENST00000356000 ELF3P78545 371 aaPredicted RBP17.64■□□□□ 0.41
RTN3-205ENST00000356000 EVI5LQ96CN4 794 aa17.64■□□□□ 0.41
RTN3-205ENST00000356000 TBC1D31Q96DN5 1066 aa17.64■□□□□ 0.41
RTN3-205ENST00000356000 MMTAG2Q9BU76 263 aaKnown RBP17.64■□□□□ 0.41
RTN3-205ENST00000356000 LRP5O75197 1615 aa17.64■□□□□ 0.41
RTN3-205ENST00000356000 SEC24CP53992 1094 aa17.64■□□□□ 0.41
RTN3-205ENST00000356000 PAPOLBQ9NRJ5 636 aaKnown RBP17.64■□□□□ 0.41
RTN3-205ENST00000356000 POLR3EQ9NVU0 708 aa17.64■□□□□ 0.41
RTN3-205ENST00000356000 PHF8Q9UPP1 1060 aa17.64■□□□□ 0.41
RTN3-205ENST00000356000 CLIC4Q9Y696 253 aa17.64■□□□□ 0.41
RTN3-205ENST00000356000 ONECUT3O60422 494 aaPredicted RBP17.63■□□□□ 0.41
RTN3-205ENST00000356000 CTDNEP1O95476 244 aa17.63■□□□□ 0.41
RTN3-205ENST00000356000 CKAP4Q07065 602 aaKnown RBP17.63■□□□□ 0.41
RTN3-205ENST00000356000 BLMHQ13867 455 aa17.63■□□□□ 0.41
RTN3-205ENST00000356000 KRT28Q7Z3Y7 464 aa17.63■□□□□ 0.41
RTN3-205ENST00000356000 ACRBPQ8NEB7 543 aa17.63■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms