RNA–Protein interactions for RNA: ENST00000249837.7

VPS13C-201, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VPS13C, Length 13,300 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-201ENST00000249837 USP17L21D6R901 530 aa5.18□□□□□ -1.58
VPS13C-201ENST00000249837 MRPS25P82663 173 aaKnown RBP5.18□□□□□ -1.58
VPS13C-201ENST00000249837 PAK1Q13153 545 aa5.18□□□□□ -1.58
VPS13C-201ENST00000249837 NR5A1Q13285 461 aa5.18□□□□□ -1.58
VPS13C-201ENST00000249837 CFAP58Q5T655 872 aa5.18□□□□□ -1.58
VPS13C-201ENST00000249837 RABGGTAQ92696 567 aa5.18□□□□□ -1.58
VPS13C-201ENST00000249837 RPGRQ92834 1020 aaKnown RBP5.18□□□□□ -1.58
VPS13C-201ENST00000249837 PARD6BQ9BYG5 372 aa5.18□□□□□ -1.58
VPS13C-201ENST00000249837 TFAP4Q01664 338 aa5.18□□□□□ -1.58
VPS13C-201ENST00000249837 TRMT1LQ7Z2T5 733 aaKnown RBP5.18□□□□□ -1.58
VPS13C-201ENST00000249837 SAMSN1Q9NSI8 373 aaKnown RBP5.18□□□□□ -1.58
VPS13C-201ENST00000249837 SOWAHDA6NJG2 315 aa5.17□□□□□ -1.58
VPS13C-201ENST00000249837 SEPT7Q16181 437 aaKnown RBP5.17□□□□□ -1.58
VPS13C-201ENST00000249837 APOA5Q6Q788 366 aa5.17□□□□□ -1.58
VPS13C-201ENST00000249837 ZBTB38Q8NAP3 1195 aaPredicted RBP5.17□□□□□ -1.58
VPS13C-201ENST00000249837 RASGRP4Q8TDF6 673 aa5.17□□□□□ -1.58
VPS13C-201ENST00000249837 CDC23Q9UJX2 597 aa5.17□□□□□ -1.58
VPS13C-201ENST00000249837 PCDHB6Q9Y5E3 794 aa5.17□□□□□ -1.58
VPS13C-201ENST00000249837 CYP27B1O15528 508 aa5.17□□□□□ -1.58
VPS13C-201ENST00000249837 ACRBPQ8NEB7 543 aa5.17□□□□□ -1.58
VPS13C-201ENST00000249837 OSBPL5Q9H0X9 879 aaPredicted RBP5.17□□□□□ -1.58
VPS13C-201ENST00000249837 SH2B2O14492 632 aaPredicted RBP5.17□□□□□ -1.58
VPS13C-201ENST00000249837 PRR29P0C7W0 189 aa5.17□□□□□ -1.58
VPS13C-201ENST00000249837 CDC25AP30304 524 aa5.17□□□□□ -1.58
VPS13C-201ENST00000249837 PTGDRQ13258 359 aa5.17□□□□□ -1.58
VPS13C-201ENST00000249837 STRBPQ96SI9 672 aaKnown RBP5.17□□□□□ -1.58
VPS13C-201ENST00000249837 SARM1Q6SZW1 724 aa5.17□□□□□ -1.58
VPS13C-201ENST00000249837 OPA1O60313 960 aa5.17□□□□□ -1.58
VPS13C-201ENST00000249837 CIAO1O76071 339 aa5.17□□□□□ -1.58
VPS13C-201ENST00000249837 SMARCC2Q8TAQ2 1214 aa5.17□□□□□ -1.58
VPS13C-201ENST00000249837 CTNNBL1Q8WYA6 563 aaPredicted RBP5.17□□□□□ -1.58
VPS13C-201ENST00000249837 C6orf50Q9HD87 102 aa5.17□□□□□ -1.58
VPS13C-201ENST00000249837 AATFQ9NY61 560 aaKnown RBP eCLIP5.17□□□□□ -1.58
VPS13C-201ENST00000249837 TXKP42681 527 aa5.17□□□□□ -1.58
VPS13C-201ENST00000249837 SLC35F6Q8N357 371 aa5.17□□□□□ -1.58
VPS13C-201ENST00000249837 GIMAP7Q8NHV1 300 aa5.17□□□□□ -1.58
VPS13C-201ENST00000249837 CCDC51Q96ER9 411 aa5.17□□□□□ -1.58
VPS13C-201ENST00000249837 POLR3EQ9NVU0 708 aa5.17□□□□□ -1.58
VPS13C-201ENST00000249837 NRXN1Q9ULB1 1477 aa5.17□□□□□ -1.58
VPS13C-201ENST00000249837 ZNF609O15014 1411 aa5.17□□□□□ -1.58
VPS13C-201ENST00000249837 PHLPP2Q6ZVD8 1323 aa5.17□□□□□ -1.58
VPS13C-201ENST00000249837 PCDH11XQ9BZA7 1347 aa5.17□□□□□ -1.58
VPS13C-201ENST00000249837 PCDH11YQ9BZA8 1340 aa5.17□□□□□ -1.58
VPS13C-201ENST00000249837 GOLGA6L7A0A1B0GV03 622 aa5.17□□□□□ -1.58
VPS13C-201ENST00000249837 EFCAB8A8MWE9 144 aa5.17□□□□□ -1.58
VPS13C-201ENST00000249837 GTPBP6O43824 516 aaPredicted RBP5.17□□□□□ -1.58
VPS13C-201ENST00000249837 ADD2P35612 726 aa5.17□□□□□ -1.58
VPS13C-201ENST00000249837 PTPROQ16827 1216 aa5.17□□□□□ -1.58
VPS13C-201ENST00000249837 NLRC4Q9NPP4 1024 aa5.17□□□□□ -1.58
VPS13C-201ENST00000249837 FAN1Q9Y2M0 1017 aa5.17□□□□□ -1.58
VPS13C-201ENST00000249837 LMTK2Q8IWU2 1503 aa5.17□□□□□ -1.58
VPS13C-201ENST00000249837 USP42Q9H9J4 1324 aaKnown RBP5.17□□□□□ -1.58
VPS13C-201ENST00000249837 GOLGA6BA6NDN3 693 aa5.17□□□□□ -1.58
VPS13C-201ENST00000249837 CASP14P31944 242 aa5.17□□□□□ -1.58
VPS13C-201ENST00000249837 KRT79Q5XKE5 535 aa5.17□□□□□ -1.58
VPS13C-201ENST00000249837 KLHL7Q8IXQ5 586 aa5.17□□□□□ -1.58
VPS13C-201ENST00000249837 NLRP3Q96P20 1036 aa5.17□□□□□ -1.58
VPS13C-201ENST00000249837 AXIN2Q9Y2T1 843 aa5.17□□□□□ -1.58
VPS13C-201ENST00000249837 SMIM23A6NLE4 172 aa5.17□□□□□ -1.58
VPS13C-201ENST00000249837 TBCAO75347 108 aaKnown RBP5.17□□□□□ -1.58
VPS13C-201ENST00000249837 TUBBP07437 444 aa5.17□□□□□ -1.58
VPS13C-201ENST00000249837 ARID4AP29374 1257 aaPredicted RBP5.17□□□□□ -1.58
VPS13C-201ENST00000249837 CLCN6P51797 869 aa5.17□□□□□ -1.58
VPS13C-201ENST00000249837 INF2Q27J81 1249 aa5.17□□□□□ -1.58
VPS13C-201ENST00000249837 TTC19Q6DKK2 380 aaPredicted RBP5.17□□□□□ -1.58
VPS13C-201ENST00000249837 ERMNQ8TAM6 284 aa5.17□□□□□ -1.58
VPS13C-201ENST00000249837 KAZALD1Q96I82 304 aa5.17□□□□□ -1.58
VPS13C-201ENST00000249837 TNKSO95271 1327 aa5.17□□□□□ -1.58
VPS13C-201ENST00000249837 PCCAP05165 728 aaPredicted RBP5.17□□□□□ -1.58
VPS13C-201ENST00000249837 CTSWP56202 376 aa5.17□□□□□ -1.58
VPS13C-201ENST00000249837 TMEM132AQ24JP5 1023 aa5.17□□□□□ -1.58
VPS13C-201ENST00000249837 TOGARAM2Q6ZUX3 1019 aa5.17□□□□□ -1.58
VPS13C-201ENST00000249837 SELENOOQ9BVL4 669 aa5.17□□□□□ -1.58
VPS13C-201ENST00000249837 GPR108Q9NPR9 543 aa5.17□□□□□ -1.58
VPS13C-201ENST00000249837 FAM207AQ9NSI2 230 aaPredicted RBP5.17□□□□□ -1.58
VPS13C-201ENST00000249837 MORC2Q9Y6X9 1032 aaPredicted RBP5.17□□□□□ -1.58
VPS13C-201ENST00000249837 ADGRB2O60241 1585 aa5.16□□□□□ -1.58
VPS13C-201ENST00000249837 DYMQ7RTS9 669 aa5.16□□□□□ -1.58
VPS13C-201ENST00000249837 SYMPKQ92797 1274 aaKnown RBP5.16□□□□□ -1.58
VPS13C-201ENST00000249837 PAIP2Q9BPZ3 127 aaKnown RBP5.16□□□□□ -1.58
VPS13C-201ENST00000249837 RBL2Q08999 1139 aa5.16□□□□□ -1.58
VPS13C-201ENST00000249837 RRAGAQ7L523 313 aa5.16□□□□□ -1.58
VPS13C-201ENST00000249837 SYCP3Q8IZU3 236 aa5.16□□□□□ -1.58
VPS13C-201ENST00000249837 GPKOWQ92917 476 aaPredicted RBP eCLIP5.16□□□□□ -1.58
VPS13C-201ENST00000249837 ZSWIM5Q9P217 1185 aa5.16□□□□□ -1.58
VPS13C-201ENST00000249837 DYNLL1P63167 89 aaKnown RBP5.16□□□□□ -1.58
VPS13C-201ENST00000249837 MAPKAPK5Q8IW41 473 aa5.16□□□□□ -1.58
VPS13C-201ENST00000249837 GSTTP1A0A1W2PQM5 241 aa5.16□□□□□ -1.58
VPS13C-201ENST00000249837 FOXN1O15353 648 aa5.16□□□□□ -1.58
VPS13C-201ENST00000249837 PDE8BO95263 885 aa5.16□□□□□ -1.58
VPS13C-201ENST00000249837 PARP1P09874 1014 aaKnown RBP5.16□□□□□ -1.58
VPS13C-201ENST00000249837 TERF2Q15554 542 aa5.16□□□□□ -1.58
VPS13C-201ENST00000249837 RESP18Q5W5W9 173 aa5.16□□□□□ -1.58
VPS13C-201ENST00000249837 CCDC25Q86WR0 208 aa5.16□□□□□ -1.58
VPS13C-201ENST00000249837 TICAM2Q86XR7 235 aa5.16□□□□□ -1.58
VPS13C-201ENST00000249837 BTG4Q9NY30 223 aa5.16□□□□□ -1.58
VPS13C-201ENST00000249837 DEPDC5O75140 1603 aa5.16□□□□□ -1.58
VPS13C-201ENST00000249837 EIF6P56537 245 aaKnown RBP5.16□□□□□ -1.58
VPS13C-201ENST00000249837 TRIM31Q9BZY9 425 aa5.16□□□□□ -1.58
VPS13C-201ENST00000249837 PREX1Q8TCU6 1659 aa5.16□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms