RNA–Protein interactions for RNA: ENSMUST00000040182.12

Ccdc88a-201, Transcript of Girdin, mousemouse

APPRIS P1 TSL 5 BASIC

Gene Ccdc88a, Length 9,376 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88a-201ENSMUST00000040182 Krtap4-1Q3UUY3 169 aa4.34□□□□□ -1.72
Ccdc88a-201ENSMUST00000040182 Krtap4-16Q91W93 202 aa4.32□□□□□ -1.72
Ccdc88a-201ENSMUST00000040182 Gm11596B1AQB0 205 aa4.31□□□□□ -1.72
Ccdc88a-201ENSMUST00000040182 Herc1E9PZP8 4859 aa4.29□□□□□ -1.72
Ccdc88a-201ENSMUST00000040182 Gm11564A2A4L9 201 aa4.27□□□□□ -1.73
Ccdc88a-201ENSMUST00000040182 Gm11563B1AQ90 168 aa4.27□□□□□ -1.73
Ccdc88a-201ENSMUST00000040182 Gm11595B1AQA7 289 aa4.27□□□□□ -1.73
Ccdc88a-201ENSMUST00000040182 Krtap4-8B1AQA8 209 aa4.27□□□□□ -1.73
Ccdc88a-201ENSMUST00000040182 Krtap4-9B1AQA9 244 aa4.24□□□□□ -1.73
Ccdc88a-201ENSMUST00000040182 Syne1Q6ZWR6 8799 aa4.21□□□□□ -1.74
Ccdc88a-201ENSMUST00000040182 Lce1a1Q9CQH5 143 aa4.21□□□□□ -1.74
Ccdc88a-201ENSMUST00000040182 Birc6O88738 4882 aa4.19□□□□□ -1.74
Ccdc88a-201ENSMUST00000040182 Muc5bE9Q5I3 4800 aa4.19□□□□□ -1.74
Ccdc88a-201ENSMUST00000040182 Krtap4-13Q9D7P3 165 aa4.15□□□□□ -1.75
Ccdc88a-201ENSMUST00000040182 Mdn1A2ANY6 5589 aaKnown RBP4.14□□□□□ -1.75
Ccdc88a-201ENSMUST00000040182 Kiaa1109A2AAE1 5005 aa4.14□□□□□ -1.75
Ccdc88a-201ENSMUST00000040182 Syne2Q6ZWQ0 6874 aaKnown RBP4.12□□□□□ -1.75
Ccdc88a-201ENSMUST00000040182 Ubr4A2AN08 5180 aa4.01□□□□□ -1.77
Ccdc88a-201ENSMUST00000040182 Krtap6-3A0A087WQL6 57 aa3.99□□□□□ -1.77
Ccdc88a-201ENSMUST00000040182 HydinQ80W93 5154 aa3.87□□□□□ -1.79
Ccdc88a-201ENSMUST00000040182 Hmcn2A2AJ76 5100 aa3.86□□□□□ -1.79
Ccdc88a-201ENSMUST00000040182 ObscnA2AAJ9 8891 aaKnown RBP3.82□□□□□ -1.8
Ccdc88a-201ENSMUST00000040182 4932415D10RikA0A1W2P6U8 4986 aa3.81□□□□□ -1.8
Ccdc88a-201ENSMUST00000040182 Gm11554B1AQB2 190 aa3.75□□□□□ -1.81
Ccdc88a-201ENSMUST00000040182 Fsip2A2ARZ3 6995 aa3.72□□□□□ -1.81
Ccdc88a-201ENSMUST00000040182 SspoQ8CG65 4998 aa3.71□□□□□ -1.82
Ccdc88a-201ENSMUST00000040182 Krtap17-1A2A5X6 109 aa3.7□□□□□ -1.82
Ccdc88a-201ENSMUST00000040182 A0A1Y7VLE6 161 aa3.67□□□□□ -1.82
Ccdc88a-201ENSMUST00000040182 Fat4Q2PZL6 4981 aa3.67□□□□□ -1.82
Ccdc88a-201ENSMUST00000040182 Abca13Q5SSE9 5034 aa3.64□□□□□ -1.83
Ccdc88a-201ENSMUST00000040182 Krtap20-2E9Q0A8 60 aa3.6□□□□□ -1.83
Ccdc88a-201ENSMUST00000040182 1110025L11RikO09048 78 aa3.51□□□□□ -1.85
Ccdc88a-201ENSMUST00000040182 Krtap6-5Q925H3 78 aa3.51□□□□□ -1.85
Ccdc88a-201ENSMUST00000040182 Rnf213E9Q555 5152 aaKnown RBP3.51□□□□□ -1.85
Ccdc88a-201ENSMUST00000040182 A030003K21RikA0A1Y7VIM3 128 aa3.39□□□□□ -1.87
Ccdc88a-201ENSMUST00000040182 Gm10229O08631 77 aa3.37□□□□□ -1.87
Ccdc88a-201ENSMUST00000040182 Ush2AQ2QI47 5193 aa3.33□□□□□ -1.88
Ccdc88a-201ENSMUST00000040182 Kmt2dQ6PDK2 5588 aa3.19□□□□□ -1.9
Ccdc88a-201ENSMUST00000040182 Eppk1Q8R0W0 6548 aa3.16□□□□□ -1.9
Ccdc88a-201ENSMUST00000040182 Phgr1Q8K0G7 91 aa3.16□□□□□ -1.9
Ccdc88a-201ENSMUST00000040182 Muc16A0A140LJ72 8478 aa3.16□□□□□ -1.9
Ccdc88a-201ENSMUST00000040182 Gm6217A0A1Y7VJK9 128 aa3.15□□□□□ -1.91
Ccdc88a-201ENSMUST00000040182 Gm11555B1AQ89 175 aa3.06□□□□□ -1.92
Ccdc88a-201ENSMUST00000040182 A030005K14RikA0A1Y7VNY1 122 aa2.99□□□□□ -1.93
Ccdc88a-201ENSMUST00000040182 Krtap28-10A0A1Y7VP58 119 aa2.96□□□□□ -1.94
Ccdc88a-201ENSMUST00000040182 DstQ91ZU6 7393 aaKnown RBP2.92□□□□□ -1.94
Ccdc88a-201ENSMUST00000040182 Macf1Q9QXZ0 7354 aaKnown RBP2.89□□□□□ -1.95
Ccdc88a-201ENSMUST00000040182 Gm11559Q9D3H7 191 aa2.89□□□□□ -1.95
Ccdc88a-201ENSMUST00000040182 Gm11568A2A4M2 211 aa2.79□□□□□ -1.96
Ccdc88a-201ENSMUST00000040182 Krtap9-1Q64526 186 aa2.79□□□□□ -1.96
Ccdc88a-201ENSMUST00000040182 A030005L19RikA0A1Y7VIU2 113 aa2.78□□□□□ -1.96
Ccdc88a-201ENSMUST00000040182 Gm11567Q9D141 195 aa2.77□□□□□ -1.97
Ccdc88a-201ENSMUST00000040182 A0A1Y7VJH8 109 aa2.76□□□□□ -1.97
Ccdc88a-201ENSMUST00000040182 Gm7544A0A1Y7VJ58 118 aa2.75□□□□□ -1.97
Ccdc88a-201ENSMUST00000040182 NebE9Q1W3 7152 aa2.74□□□□□ -1.97
Ccdc88a-201ENSMUST00000040182 Gm11639A0A1D5RLM8 5808 aa2.73□□□□□ -1.97
Ccdc88a-201ENSMUST00000040182 A0A1Y7VJ07 166 aa2.71□□□□□ -1.98
Ccdc88a-201ENSMUST00000040182 Muc19Q6PZE0 7524 aa2.69□□□□□ -1.98
Ccdc88a-201ENSMUST00000040182 Krtap6-2O08884 159 aa2.65□□□□□ -1.99
Ccdc88a-201ENSMUST00000040182 Krtap28-13A0A087WQP5 138 aa2.64□□□□□ -1.99
Ccdc88a-201ENSMUST00000040182 Krtap5-2Q9D5Z7 189 aa2.6□□□□□ -1.99
Ccdc88a-201ENSMUST00000040182 Hmcn1D3YXG0 5634 aa2.53□□□□□ -2
Ccdc88a-201ENSMUST00000040182 Gpr98Q8VHN7 6298 aaKnown RBP2.5□□□□□ -2.01
Ccdc88a-201ENSMUST00000040182 A030014E15RikA0A1Y7VJV2 120 aa2.45□□□□□ -2.02
Ccdc88a-201ENSMUST00000040182 Krtap21-1Q925H4 128 aa2.4□□□□□ -2.03
Ccdc88a-201ENSMUST00000040182 Gm4553A0A1B0GSA9 284 aa2.38□□□□□ -2.03
Ccdc88a-201ENSMUST00000040182 Gm10153A0A1B0GRL1 320 aa2.16□□□□□ -2.06
Ccdc88a-201ENSMUST00000040182 Gm2431E9Q8S1 172 aa2.11□□□□□ -2.07
Ccdc88a-201ENSMUST00000040182 AhnakE9Q616 5656 aaKnown RBP2.07□□□□□ -2.08
Ccdc88a-201ENSMUST00000040182 A0A286YCP9 139 aa2.03□□□□□ -2.08
Ccdc88a-201ENSMUST00000040182 Gm45337A0A1B0GS71 263 aa2□□□□□ -2.09
Ccdc88a-201ENSMUST00000040182 Gm40460A0A1B0GR10 244 aa1.96□□□□□ -2.1
Ccdc88a-201ENSMUST00000040182 Gm7579A0A1B0GRJ4 243 aa1.96□□□□□ -2.1
Ccdc88a-201ENSMUST00000040182 Gm39115A0A1B0GSH7 232 aa1.96□□□□□ -2.1
Ccdc88a-201ENSMUST00000040182 Krtap5-5Q2TA51 241 aa1.96□□□□□ -2.1
Ccdc88a-201ENSMUST00000040182 Krtap5-4Q62220 223 aa1.96□□□□□ -2.1
Ccdc88a-201ENSMUST00000040182 Gm29735A0A1B0GT06 219 aa1.57□□□□□ -2.16
Ccdc88a-201ENSMUST00000040182 Gm45618A0A1B0GSA0 219 aa1.54□□□□□ -2.16
Ccdc88a-201ENSMUST00000040182 Krtap5-1Q64507 230 aa1.21□□□□□ -2.22
Ccdc88a-201ENSMUST00000040182 Gm4559A4IF42 199 aa0.73□□□□□ -2.29
Retrieved 80 of 22,080 RNA–protein pairs in 100.2 ms